Wall clock time and date at job start Sat Apr 11 2020 06:15:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47137 * 2 1 4 4 N 1.46502 * 109.47232 * 180.02562 * 3 2 1 5 5 S 1.65595 * 120.00097 * 164.51343 * 4 3 2 6 6 O 1.42101 * 106.40142 * 307.77043 * 5 4 3 7 7 O 1.42101 * 106.40323 * 174.85337 * 5 4 3 8 8 C 1.76198 * 107.22069 * 61.31523 * 5 4 3 9 9 C 1.37636 * 120.12445 * 244.51336 * 8 5 4 10 10 C 1.38614 * 120.24546 * 180.29600 * 9 8 5 11 11 C 1.38661 * 120.50204 * 359.44494 * 10 9 8 12 12 C 1.37601 * 120.24393 * 0.54905 * 11 10 9 13 13 C 1.40690 * 120.12772 * 64.53002 * 8 5 4 14 14 C 1.41392 * 120.24739 * 359.95936 * 13 8 5 15 15 H 1.08001 * 120.00127 * 331.95139 * 14 13 8 16 16 C 1.39950 * 120.00338 * 151.94637 * 14 13 8 17 17 N 1.30819 * 119.99717 * 347.91980 * 16 14 13 18 18 Si 1.86794 * 119.99889 * 167.91899 * 16 14 13 19 19 H 1.48499 * 109.47515 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47040 * 120.00469 * 18 16 14 21 21 H 1.48498 * 109.47174 * 239.99978 * 18 16 14 22 22 O 1.42963 * 109.47132 * 120.00084 * 2 1 3 23 23 C 1.43091 * 113.77069 * 61.20387 * 22 2 1 24 24 C 1.53262 * 108.94135 * 57.96836 * 23 22 2 25 25 C 1.53255 * 108.84831 * 305.47677 * 24 23 22 26 26 O 1.42968 * 109.46865 * 239.99906 * 2 1 3 27 27 H 1.09001 * 109.47380 * 59.99952 * 1 2 3 28 28 H 1.08995 * 109.47405 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46726 * 300.00088 * 1 2 3 30 30 H 1.09001 * 109.47384 * 60.00315 * 3 2 1 31 31 H 1.09007 * 109.47372 * 300.00000 * 3 2 1 32 32 H 0.97005 * 119.99724 * 344.51746 * 4 3 2 33 33 H 1.07998 * 119.87855 * 0.02562 * 9 8 5 34 34 H 1.08002 * 119.75196 * 179.69824 * 10 9 8 35 35 H 1.07995 * 119.87464 * 180.30729 * 11 10 9 36 36 H 1.08001 * 120.12072 * 179.74745 * 12 11 10 37 37 H 0.97000 * 120.00073 * 179.97438 * 17 16 14 38 38 H 1.08997 * 109.56152 * 298.13616 * 23 22 2 39 39 H 1.08999 * 109.65316 * 177.86083 * 23 22 2 40 40 H 1.09009 * 109.57612 * 185.66501 * 24 23 22 41 41 H 1.09004 * 109.68071 * 65.35036 * 24 23 22 42 42 H 1.09003 * 109.55792 * 294.68523 * 25 24 23 43 43 H 1.08999 * 109.65293 * 174.41860 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 16 4.3328 2.8246 -0.3837 6 8 3.8099 3.2742 -1.6261 7 8 5.7094 2.5379 -0.1780 8 6 3.8946 4.0432 0.8111 9 6 3.2137 5.1754 0.4252 10 6 2.8730 6.1386 1.3620 11 6 3.2029 5.9687 2.6980 12 6 3.8835 4.8446 3.1063 13 6 4.2396 3.8629 2.1630 14 6 4.9386 2.7036 2.5712 15 1 4.8270 1.7828 2.0179 16 6 5.7754 2.7492 3.6921 17 7 6.0988 3.9015 4.2203 18 14 6.4303 1.1649 4.4337 19 1 5.9212 0.0067 3.6561 20 1 7.9146 1.1750 4.3913 21 1 5.9762 1.0533 5.8432 22 8 2.0066 -0.6740 1.1673 23 6 1.6041 -2.0448 1.2465 24 6 2.1043 -2.7830 -0.0001 25 6 1.6041 -2.0448 -1.2466 26 8 2.0065 -0.6740 -1.1673 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 3.9901 0.6328 0.2233 33 1 2.9476 5.3159 -0.6121 34 1 2.3430 7.0262 1.0496 35 1 2.9282 6.7233 3.4201 36 1 4.1430 4.7163 4.1468 37 1 6.6784 3.9331 4.9975 38 1 0.5168 -2.1038 1.2937 39 1 2.0334 -2.5020 2.1380 40 1 1.7187 -3.8026 -0.0001 41 1 3.1941 -2.8047 -0.0013 42 1 0.5167 -2.1038 -1.2938 43 1 2.0332 -2.5002 -2.1391 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867185460.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:45 Heat of formation + Delta-G solvation = -150.233294 kcal Electronic energy + Delta-G solvation = -29342.627533 eV Core-core repulsion = 25286.518690 eV Total energy + Delta-G solvation = -4056.108843 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.40388 -37.53593 -36.13078 -35.68649 -35.06252 -34.72554 -33.83235 -32.30395 -30.27966 -30.14712 -29.49635 -26.05164 -25.86373 -25.44004 -22.64218 -21.59214 -21.07878 -19.90488 -18.50279 -17.75066 -17.60496 -17.08216 -16.63904 -15.99919 -15.76197 -15.35263 -14.92749 -14.80551 -14.73980 -14.30660 -13.97744 -13.36079 -13.30175 -13.22857 -13.07758 -12.90583 -12.71605 -12.50117 -12.19993 -11.83669 -11.62844 -11.54755 -11.44914 -11.21427 -11.11587 -11.08623 -11.00800 -10.92111 -10.77583 -10.57938 -10.41554 -10.06312 -9.84178 -9.57341 -9.39892 -9.36539 -8.66903 -7.98374 -7.55197 -6.98168 -4.69421 1.63051 2.39062 2.77086 3.01610 3.09718 3.15467 3.52793 3.54758 3.83690 4.03257 4.45792 4.56264 4.58369 4.63171 4.76681 4.85249 4.94356 5.16619 5.20392 5.35285 5.37741 5.45242 5.56651 5.61416 5.69731 5.78697 5.83337 5.93016 5.99237 6.09297 6.28795 6.32760 6.46834 6.81920 6.85532 7.01538 7.14602 7.20187 7.37053 7.54856 7.67025 7.77340 7.86149 7.96120 8.35988 8.56669 8.70738 9.94724 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010689 B = 0.005341 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.826694 B = 5241.532996 C = 6483.948421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.266 3.734 3 C 0.155 3.845 4 N -1.110 6.110 5 S 2.702 3.298 6 O -0.999 6.999 7 O -0.965 6.965 8 C -0.777 4.777 9 C -0.003 4.003 10 C -0.252 4.252 11 C -0.077 4.077 12 C -0.158 4.158 13 C 0.186 3.814 14 C -0.441 4.441 15 H 0.091 0.909 16 C 0.080 3.920 17 N -0.777 5.777 18 Si 0.915 3.085 19 H -0.253 1.253 20 H -0.269 1.269 21 H -0.270 1.270 22 O -0.371 6.371 23 C 0.053 3.947 24 C -0.193 4.193 25 C 0.053 3.947 26 O -0.374 6.374 27 H 0.081 0.919 28 H 0.066 0.934 29 H 0.082 0.918 30 H 0.087 0.913 31 H 0.093 0.907 32 H 0.417 0.583 33 H 0.108 0.892 34 H 0.094 0.906 35 H 0.093 0.907 36 H 0.125 0.875 37 H 0.286 0.714 38 H 0.054 0.946 39 H 0.098 0.902 40 H 0.081 0.919 41 H 0.083 0.917 42 H 0.054 0.946 43 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.398 -11.450 -2.818 15.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.265 4.265 2 C 0.187 3.813 3 C 0.027 3.973 4 N -0.868 5.868 5 S 2.799 3.201 6 O -0.989 6.989 7 O -0.955 6.955 8 C -0.873 4.873 9 C -0.023 4.023 10 C -0.272 4.272 11 C -0.096 4.096 12 C -0.178 4.178 13 C 0.181 3.819 14 C -0.469 4.469 15 H 0.109 0.891 16 C -0.141 4.141 17 N -0.400 5.400 18 Si 0.738 3.262 19 H -0.176 1.176 20 H -0.194 1.194 21 H -0.196 1.196 22 O -0.292 6.292 23 C -0.023 4.023 24 C -0.231 4.231 25 C -0.024 4.024 26 O -0.295 6.295 27 H 0.100 0.900 28 H 0.085 0.915 29 H 0.101 0.899 30 H 0.105 0.895 31 H 0.111 0.889 32 H 0.251 0.749 33 H 0.126 0.874 34 H 0.112 0.888 35 H 0.111 0.889 36 H 0.142 0.858 37 H 0.097 0.903 38 H 0.072 0.928 39 H 0.116 0.884 40 H 0.099 0.901 41 H 0.102 0.898 42 H 0.072 0.928 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -9.539 -10.930 -3.424 14.906 hybrid contribution -0.155 -0.943 1.221 1.550 sum -9.694 -11.872 -2.203 15.485 Atomic orbital electron populations 1.22816 0.95587 1.03394 1.04675 1.22919 0.91174 0.90844 0.76316 1.21056 0.81349 0.91607 1.03260 1.55377 1.13665 1.29117 1.88634 1.01045 0.72980 0.72700 0.73380 1.93442 1.81186 1.81722 1.42570 1.93539 1.31093 1.84150 1.86723 1.29872 1.29475 1.16811 1.11097 1.20251 0.92358 0.92043 0.97642 1.20473 1.11863 1.00892 0.94009 1.20892 0.96985 0.96692 0.95077 1.21514 1.00838 0.95342 1.00078 1.17002 0.85024 0.91539 0.88302 1.19953 1.20336 0.97320 1.09285 0.89122 1.25961 0.94680 0.98166 0.95289 1.69794 1.25602 1.26341 1.18279 0.86119 0.79287 0.81737 0.79015 1.17574 1.19446 1.19554 1.88270 1.75721 1.23022 1.42156 1.22648 0.98966 0.82356 0.98356 1.22794 1.03539 1.00237 0.96571 1.22650 0.98962 0.82429 0.98332 1.88254 1.75849 1.23006 1.42377 0.90047 0.91513 0.89893 0.89454 0.88941 0.74872 0.87442 0.88820 0.88914 0.85769 0.90267 0.92775 0.88362 0.90071 0.89816 0.92800 0.88501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -2.15 8.11 37.16 0.30 -1.85 16 2 C 0.27 3.68 1.08 -26.73 -0.03 3.65 16 3 C 0.15 2.51 5.56 -4.04 -0.02 2.48 16 4 N -1.11 -21.16 4.85 -10.61 -0.05 -21.21 16 5 S 2.70 61.49 4.94 -107.50 -0.53 60.96 16 6 O -1.00 -23.45 16.56 -57.17 -0.95 -24.40 16 7 O -0.96 -24.94 16.60 -57.17 -0.95 -25.89 16 8 C -0.78 -18.88 5.86 -38.88 -0.23 -19.11 16 9 C 0.00 -0.07 9.53 -39.66 -0.38 -0.45 16 10 C -0.25 -5.55 10.05 -39.29 -0.39 -5.94 16 11 C -0.08 -1.75 10.02 -39.66 -0.40 -2.15 16 12 C -0.16 -3.94 8.66 -38.87 -0.34 -4.28 16 13 C 0.19 4.80 5.55 -106.83 -0.59 4.21 16 14 C -0.44 -11.30 7.67 -37.74 -0.29 -11.59 16 15 H 0.09 2.22 5.78 -52.49 -0.30 1.92 16 16 C 0.08 1.96 5.23 -17.34 -0.09 1.87 16 17 N -0.78 -19.40 10.87 55.55 0.60 -18.80 16 18 Si 0.92 18.54 29.58 -169.99 -5.03 13.51 16 19 H -0.25 -5.05 7.11 56.52 0.40 -4.65 16 20 H -0.27 -5.44 7.11 56.52 0.40 -5.04 16 21 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 22 O -0.37 -5.40 9.93 -59.03 -0.59 -5.98 16 23 C 0.05 0.56 6.60 37.29 0.25 0.81 16 24 C -0.19 -1.80 6.35 -26.46 -0.17 -1.97 16 25 C 0.05 0.53 6.60 37.29 0.25 0.78 16 26 O -0.37 -5.29 10.22 -59.03 -0.60 -5.89 16 27 H 0.08 0.78 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.58 5.11 -51.93 -0.27 0.32 16 29 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 30 H 0.09 1.39 8.14 -51.93 -0.42 0.96 16 31 H 0.09 1.42 7.83 -51.93 -0.41 1.02 16 32 H 0.42 7.70 8.19 -34.47 -0.28 7.42 16 33 H 0.11 2.27 7.33 -52.49 -0.38 1.89 16 34 H 0.09 1.79 8.06 -52.49 -0.42 1.37 16 35 H 0.09 1.83 8.06 -52.49 -0.42 1.40 16 36 H 0.12 3.13 6.22 -52.49 -0.33 2.80 16 37 H 0.29 6.41 8.30 -40.82 -0.34 6.07 16 38 H 0.05 0.47 6.53 -51.93 -0.34 0.13 16 39 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 40 H 0.08 0.54 8.14 -51.92 -0.42 0.12 16 41 H 0.08 0.88 8.14 -51.93 -0.42 0.46 16 42 H 0.05 0.45 6.53 -51.93 -0.34 0.11 16 43 H 0.10 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 356.67 15.07 5.37 5.37 Total: -1.00 -32.26 356.67 -10.44 -42.70 By element: Atomic # 1 Polarization: 18.75 SS G_CDS: -5.59 Total: 13.17 kcal Atomic # 6 Polarization: -31.39 SS G_CDS: -2.13 Total: -33.53 kcal Atomic # 7 Polarization: -40.57 SS G_CDS: 0.55 Total: -40.01 kcal Atomic # 8 Polarization: -59.07 SS G_CDS: -3.09 Total: -62.16 kcal Atomic # 14 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Atomic # 16 Polarization: 61.49 SS G_CDS: -0.53 Total: 60.96 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -32.26 -10.44 -42.70 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867185460.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.538 kcal (2) G-P(sol) polarization free energy of solvation -32.257 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.795 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.233 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds