Wall clock time and date at job start Sat Apr 11 2020 06:15:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52995 * 109.47137 * 2 1 4 4 N 1.46502 * 109.47232 * 180.02562 * 3 2 1 5 5 S 1.65595 * 120.00097 * 164.51343 * 4 3 2 6 6 O 1.42101 * 106.40142 * 307.77043 * 5 4 3 7 7 O 1.42101 * 106.40323 * 174.85337 * 5 4 3 8 8 C 1.76198 * 107.22069 * 61.31523 * 5 4 3 9 9 C 1.37636 * 120.12445 * 244.51336 * 8 5 4 10 10 C 1.38614 * 120.24546 * 180.29600 * 9 8 5 11 11 C 1.38661 * 120.50204 * 359.44494 * 10 9 8 12 12 C 1.37601 * 120.24393 * 0.54905 * 11 10 9 13 13 C 1.40690 * 120.12772 * 64.53002 * 8 5 4 14 14 C 1.41392 * 120.24739 * 359.95936 * 13 8 5 15 15 H 1.08001 * 120.00127 * 331.95139 * 14 13 8 16 16 C 1.39950 * 120.00338 * 151.94637 * 14 13 8 17 17 N 1.30819 * 119.99717 * 347.91980 * 16 14 13 18 18 Si 1.86794 * 119.99889 * 167.91899 * 16 14 13 19 19 H 1.48499 * 109.47515 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47040 * 120.00469 * 18 16 14 21 21 H 1.48498 * 109.47174 * 239.99978 * 18 16 14 22 22 O 1.42963 * 109.47132 * 120.00084 * 2 1 3 23 23 C 1.43091 * 113.77069 * 61.20387 * 22 2 1 24 24 C 1.53262 * 108.94135 * 57.96836 * 23 22 2 25 25 C 1.53255 * 108.84831 * 305.47677 * 24 23 22 26 26 O 1.42968 * 109.46865 * 239.99906 * 2 1 3 27 27 H 1.09001 * 109.47380 * 59.99952 * 1 2 3 28 28 H 1.08995 * 109.47405 * 180.02562 * 1 2 3 29 29 H 1.09001 * 109.46726 * 300.00088 * 1 2 3 30 30 H 1.09001 * 109.47384 * 60.00315 * 3 2 1 31 31 H 1.09007 * 109.47372 * 300.00000 * 3 2 1 32 32 H 0.97005 * 119.99724 * 344.51746 * 4 3 2 33 33 H 1.07998 * 119.87855 * 0.02562 * 9 8 5 34 34 H 1.08002 * 119.75196 * 179.69824 * 10 9 8 35 35 H 1.07995 * 119.87464 * 180.30729 * 11 10 9 36 36 H 1.08001 * 120.12072 * 179.74745 * 12 11 10 37 37 H 0.97000 * 120.00073 * 179.97438 * 17 16 14 38 38 H 1.08997 * 109.56152 * 298.13616 * 23 22 2 39 39 H 1.08999 * 109.65316 * 177.86083 * 23 22 2 40 40 H 1.09009 * 109.57612 * 185.66501 * 24 23 22 41 41 H 1.09004 * 109.68071 * 65.35036 * 24 23 22 42 42 H 1.09003 * 109.55792 * 294.68523 * 25 24 23 43 43 H 1.08999 * 109.65293 * 174.41860 * 25 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5050 1.4425 -0.0006 5 16 4.3328 2.8246 -0.3837 6 8 3.8099 3.2742 -1.6261 7 8 5.7094 2.5379 -0.1780 8 6 3.8946 4.0432 0.8111 9 6 3.2137 5.1754 0.4252 10 6 2.8730 6.1386 1.3620 11 6 3.2029 5.9687 2.6980 12 6 3.8835 4.8446 3.1063 13 6 4.2396 3.8629 2.1630 14 6 4.9386 2.7036 2.5712 15 1 4.8270 1.7828 2.0179 16 6 5.7754 2.7492 3.6921 17 7 6.0988 3.9015 4.2203 18 14 6.4303 1.1649 4.4337 19 1 5.9212 0.0067 3.6561 20 1 7.9146 1.1750 4.3913 21 1 5.9762 1.0533 5.8432 22 8 2.0066 -0.6740 1.1673 23 6 1.6041 -2.0448 1.2465 24 6 2.1043 -2.7830 -0.0001 25 6 1.6041 -2.0448 -1.2466 26 8 2.0065 -0.6740 -1.1673 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3634 -1.0276 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9564 -0.8900 32 1 3.9901 0.6328 0.2233 33 1 2.9476 5.3159 -0.6121 34 1 2.3430 7.0262 1.0496 35 1 2.9282 6.7233 3.4201 36 1 4.1430 4.7163 4.1468 37 1 6.6784 3.9331 4.9975 38 1 0.5168 -2.1038 1.2937 39 1 2.0334 -2.5020 2.1380 40 1 1.7187 -3.8026 -0.0001 41 1 3.1941 -2.8047 -0.0013 42 1 0.5167 -2.1038 -1.2938 43 1 2.0332 -2.5002 -2.1391 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867185460.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:44 Heat of formation + Delta-G solvation = -172.964124 kcal Electronic energy + Delta-G solvation = -29343.613216 eV Core-core repulsion = 25286.518690 eV Total energy + Delta-G solvation = -4057.094526 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.33869 -39.36142 -38.02029 -36.65134 -36.64266 -36.35307 -35.64705 -33.31896 -31.99810 -31.34957 -31.17102 -27.37713 -26.93386 -26.84812 -23.65425 -23.40015 -22.91096 -20.76268 -20.21285 -19.49527 -18.71594 -18.49234 -18.25864 -17.45269 -17.12381 -16.90378 -16.26895 -16.01448 -15.76233 -15.72755 -15.40429 -15.03877 -14.91723 -14.51508 -14.47202 -14.22561 -13.88352 -13.65461 -13.39435 -13.29490 -13.22862 -12.98326 -12.92445 -12.83268 -12.80217 -12.75809 -12.48241 -12.32784 -12.10763 -11.94389 -11.89781 -11.63492 -11.19074 -11.14053 -10.93136 -10.46005 -10.23591 -9.82064 -9.41245 -8.79267 -6.59261 -0.15235 0.54651 0.98501 1.35194 1.48874 1.51331 2.16627 2.30696 2.61789 2.64035 2.66775 3.01372 3.49179 3.66805 3.72627 3.85257 3.88381 3.96940 4.21972 4.34379 4.38918 4.46110 4.51557 4.52822 4.58463 4.63248 4.70737 4.74246 4.88359 4.91214 4.91867 5.03391 5.07159 5.17659 5.25469 5.32215 5.54232 5.72991 5.85026 5.94569 6.02863 6.11080 6.21400 6.28745 6.50364 6.69671 6.85271 8.16948 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010689 B = 0.005341 C = 0.004317 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2618.826694 B = 5241.532996 C = 6483.948421 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C 0.266 3.734 3 C 0.142 3.858 4 N -1.101 6.101 5 S 2.719 3.281 6 O -1.008 7.008 7 O -1.002 7.002 8 C -0.791 4.791 9 C -0.016 4.016 10 C -0.249 4.249 11 C -0.075 4.075 12 C -0.185 4.185 13 C 0.163 3.837 14 C -0.471 4.471 15 H 0.090 0.910 16 C 0.039 3.961 17 N -0.807 5.807 18 Si 0.974 3.026 19 H -0.253 1.253 20 H -0.268 1.268 21 H -0.252 1.252 22 O -0.403 6.403 23 C 0.043 3.957 24 C -0.188 4.188 25 C 0.043 3.957 26 O -0.402 6.402 27 H 0.089 0.911 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.085 0.915 31 H 0.098 0.902 32 H 0.419 0.581 33 H 0.124 0.876 34 H 0.129 0.871 35 H 0.123 0.877 36 H 0.114 0.886 37 H 0.295 0.705 38 H 0.076 0.924 39 H 0.104 0.896 40 H 0.113 0.887 41 H 0.064 0.936 42 H 0.077 0.923 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.161 -12.552 -2.814 17.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.258 4.258 2 C 0.188 3.812 3 C 0.016 3.984 4 N -0.861 5.861 5 S 2.816 3.184 6 O -0.999 6.999 7 O -0.992 6.992 8 C -0.886 4.886 9 C -0.035 4.035 10 C -0.269 4.269 11 C -0.093 4.093 12 C -0.205 4.205 13 C 0.158 3.842 14 C -0.500 4.500 15 H 0.108 0.892 16 C -0.178 4.178 17 N -0.431 5.431 18 Si 0.794 3.206 19 H -0.176 1.176 20 H -0.192 1.192 21 H -0.176 1.176 22 O -0.324 6.324 23 C -0.033 4.033 24 C -0.226 4.226 25 C -0.032 4.032 26 O -0.323 6.323 27 H 0.108 0.892 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.116 0.884 32 H 0.254 0.746 33 H 0.142 0.858 34 H 0.147 0.853 35 H 0.141 0.859 36 H 0.132 0.868 37 H 0.106 0.894 38 H 0.095 0.905 39 H 0.122 0.878 40 H 0.131 0.869 41 H 0.083 0.917 42 H 0.095 0.905 43 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges -11.319 -12.017 -3.419 16.859 hybrid contribution 0.318 -0.555 1.146 1.313 sum -11.001 -12.572 -2.272 16.860 Atomic orbital electron populations 1.22776 0.92757 1.05013 1.05291 1.22822 0.92869 0.89191 0.76319 1.21339 0.79330 0.94357 1.03405 1.55020 1.15095 1.27645 1.88353 1.00345 0.72194 0.72916 0.72929 1.93417 1.81178 1.82290 1.42966 1.93479 1.33799 1.84812 1.87127 1.30088 1.29535 1.17997 1.10952 1.20584 0.92219 0.91888 0.98835 1.20896 1.10915 1.01571 0.93495 1.21255 0.95503 0.96356 0.96207 1.21564 1.02605 0.96680 0.99679 1.17298 0.85597 0.92176 0.89120 1.20178 1.21620 0.97546 1.10619 0.89182 1.26771 0.94583 1.01202 0.95294 1.69819 1.26344 1.27932 1.18978 0.85265 0.78559 0.77824 0.78997 1.17573 1.19248 1.17612 1.88215 1.76625 1.25116 1.42432 1.22932 1.00469 0.80653 0.99202 1.22770 1.02453 1.01722 0.95678 1.22949 1.00519 0.80631 0.99129 1.88199 1.76696 1.25098 1.42358 0.89195 0.89363 0.89540 0.89686 0.88430 0.74597 0.85841 0.85306 0.85876 0.86787 0.89394 0.90547 0.87829 0.86902 0.91686 0.90532 0.87450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -3.72 8.11 71.98 0.58 -3.14 16 2 C 0.27 7.11 1.08 30.59 0.03 7.14 16 3 C 0.14 4.61 5.56 86.38 0.48 5.09 16 4 N -1.10 -42.82 4.85 -187.49 -0.91 -43.73 16 5 S 2.72 126.28 4.94 -56.49 -0.28 126.00 16 6 O -1.01 -47.57 16.56 -128.00 -2.12 -49.69 16 7 O -1.00 -53.46 16.60 -128.00 -2.13 -55.59 16 8 C -0.79 -38.95 5.86 22.73 0.13 -38.81 16 9 C -0.02 -0.70 9.53 22.22 0.21 -0.49 16 10 C -0.25 -10.48 10.05 22.46 0.23 -10.25 16 11 C -0.07 -3.29 10.02 22.22 0.22 -3.06 16 12 C -0.19 -9.38 8.66 22.73 0.20 -9.18 16 13 C 0.16 8.59 5.55 -21.29 -0.12 8.47 16 14 C -0.47 -24.89 7.67 23.46 0.18 -24.71 16 15 H 0.09 4.58 5.78 -2.91 -0.02 4.56 16 16 C 0.04 1.97 5.23 85.26 0.45 2.41 16 17 N -0.81 -41.14 10.87 21.83 0.24 -40.90 16 18 Si 0.97 38.27 29.58 68.60 2.03 40.30 16 19 H -0.25 -9.78 7.11 99.48 0.71 -9.07 16 20 H -0.27 -10.34 7.11 99.48 0.71 -9.64 16 21 H -0.25 -9.07 7.11 99.48 0.71 -8.37 16 22 O -0.40 -11.42 9.93 -126.22 -1.25 -12.67 16 23 C 0.04 0.83 6.60 72.07 0.48 1.30 16 24 C -0.19 -3.12 6.35 30.77 0.20 -2.92 16 25 C 0.04 0.78 6.60 72.07 0.48 1.26 16 26 O -0.40 -10.93 10.22 -126.22 -1.29 -12.22 16 27 H 0.09 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.09 1.24 5.11 -2.39 -0.01 1.23 16 29 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.09 2.75 8.14 -2.39 -0.02 2.73 16 31 H 0.10 3.00 7.83 -2.38 -0.02 2.98 16 32 H 0.42 15.98 8.19 -96.74 -0.79 15.19 16 33 H 0.12 5.08 7.33 -2.91 -0.02 5.06 16 34 H 0.13 4.48 8.06 -2.91 -0.02 4.45 16 35 H 0.12 4.58 8.06 -2.91 -0.02 4.55 16 36 H 0.11 5.90 6.22 -2.91 -0.02 5.89 16 37 H 0.30 13.42 8.30 -92.71 -0.77 12.65 16 38 H 0.08 1.10 6.53 -2.39 -0.02 1.08 16 39 H 0.10 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.11 1.13 8.14 -2.38 -0.02 1.11 16 41 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 42 H 0.08 1.02 6.53 -2.39 -0.02 1.00 16 43 H 0.11 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -70.54 356.67 -1.71 -72.25 By element: Atomic # 1 Polarization: 42.88 SS G_CDS: 0.26 Total: 43.13 kcal Atomic # 6 Polarization: -70.63 SS G_CDS: 3.74 Total: -66.89 kcal Atomic # 7 Polarization: -83.96 SS G_CDS: -0.67 Total: -84.63 kcal Atomic # 8 Polarization: -123.37 SS G_CDS: -6.79 Total: -130.16 kcal Atomic # 14 Polarization: 38.27 SS G_CDS: 2.03 Total: 40.30 kcal Atomic # 16 Polarization: 126.28 SS G_CDS: -0.28 Total: 126.00 kcal Total: -70.54 -1.71 -72.25 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867185460.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.709 kcal (2) G-P(sol) polarization free energy of solvation -70.544 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -171.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.710 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.255 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds