Wall clock time and date at job start Sat Apr 11 2020 06:15:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50693 * 109.47280 * 2 1 4 4 C 1.38262 * 120.00354 * 259.96117 * 3 2 1 5 5 C 1.38213 * 119.99455 * 180.27984 * 4 3 2 6 6 C 1.38256 * 120.00736 * 359.74693 * 5 4 3 7 7 C 1.38212 * 119.99500 * 359.97438 * 6 5 4 8 8 C 1.38214 * 119.99712 * 79.71238 * 3 2 1 9 9 S 1.76197 * 120.00037 * 359.97438 * 8 3 2 10 10 O 1.42098 * 106.40688 * 279.66345 * 9 8 3 11 11 O 1.42104 * 106.40384 * 52.58435 * 9 8 3 12 12 N 1.65602 * 107.22142 * 166.12210 * 9 8 3 13 13 C 1.36932 * 120.00028 * 260.53347 * 12 9 8 14 14 H 1.08011 * 120.00066 * 127.37979 * 13 12 9 15 15 C 1.38812 * 120.00200 * 307.37421 * 13 12 9 16 16 N 1.31621 * 120.00208 * 165.32606 * 15 13 12 17 17 Si 1.86804 * 119.99657 * 345.33246 * 15 13 12 18 18 H 1.48493 * 109.47250 * 94.13433 * 17 15 13 19 19 H 1.48504 * 109.46731 * 214.13235 * 17 15 13 20 20 H 1.48500 * 109.47096 * 334.12945 * 17 15 13 21 21 C 1.46505 * 119.99715 * 80.52557 * 12 9 8 22 22 C 1.52999 * 109.46866 * 93.79039 * 21 12 9 23 23 C 1.50701 * 109.47157 * 184.18447 * 22 21 12 24 24 O 1.20823 * 119.99884 * 359.97438 * 23 22 21 25 25 O 1.34230 * 119.99595 * 180.02562 * 23 22 21 26 26 C 1.45202 * 116.99418 * 179.97438 * 25 23 22 27 27 H 1.09000 * 109.46885 * 65.57926 * 1 2 3 28 28 H 1.08999 * 109.47346 * 185.58554 * 1 2 3 29 29 H 1.08996 * 109.46667 * 305.58534 * 1 2 3 30 30 H 1.09011 * 109.46332 * 240.00324 * 2 1 3 31 31 H 1.08999 * 109.47187 * 120.00847 * 2 1 3 32 32 H 1.07992 * 120.00119 * 0.04457 * 4 3 2 33 33 H 1.08003 * 119.99231 * 179.76922 * 5 4 3 34 34 H 1.07999 * 120.00429 * 180.02562 * 6 5 4 35 35 H 1.08005 * 120.00011 * 180.02562 * 7 6 5 36 36 H 0.97003 * 119.99737 * 179.97438 * 16 15 13 37 37 H 1.08999 * 109.47171 * 213.78523 * 21 12 9 38 38 H 1.08991 * 109.47126 * 333.79133 * 21 12 9 39 39 H 1.09004 * 109.47480 * 304.18286 * 22 21 12 40 40 H 1.09007 * 109.47188 * 64.18233 * 22 21 12 41 41 H 1.08998 * 109.47155 * 179.97438 * 26 25 23 42 42 H 1.08999 * 109.47501 * 299.99833 * 26 25 23 43 43 H 1.09001 * 109.47491 * 59.99964 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.4596 2.0030 -1.1790 5 6 2.9258 3.3041 -1.1778 6 6 2.9600 4.0253 0.0013 7 6 2.5274 3.4451 1.1789 8 6 2.0612 2.1435 1.1778 9 16 1.5099 1.4039 2.6790 10 8 0.0912 1.4830 2.6681 11 8 2.2190 0.1791 2.8070 12 7 2.0228 2.3729 3.9201 13 6 3.1480 2.0422 4.6269 14 1 3.9400 2.7660 4.7511 15 6 3.2707 0.7767 5.1841 16 7 4.4435 0.3549 5.6073 17 14 1.7714 -0.3276 5.3330 18 1 1.6966 -1.2228 4.1506 19 1 1.8802 -1.1460 6.5674 20 1 0.5457 0.5081 5.3996 21 6 1.2726 3.5841 4.2618 22 6 0.2708 3.2668 5.3738 23 6 -0.5710 4.4849 5.6541 24 8 -0.3881 5.5025 5.0289 25 8 -1.5233 4.4395 6.5990 26 6 -2.2952 5.6502 6.8155 27 1 -0.3633 0.4249 -0.9357 28 1 -0.3634 -1.0228 0.1000 29 1 -0.3632 0.5980 0.8357 30 1 1.8933 -0.5139 -0.8901 31 1 1.8934 -0.5140 0.8899 32 1 2.4327 1.4399 -2.1001 33 1 3.2630 3.7577 -2.0981 34 1 3.3238 5.0421 0.0022 35 1 2.5537 4.0085 2.1000 36 1 4.5291 -0.5293 5.9970 37 1 1.9633 4.3548 4.6040 38 1 0.7377 3.9405 3.3816 39 1 -0.3726 2.4449 5.0596 40 1 0.8094 2.9815 6.2775 41 1 -3.0286 5.4776 7.6031 42 1 -1.6272 6.4590 7.1115 43 1 -2.8097 5.9228 5.8940 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000867739467.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:51 Heat of formation + Delta-G solvation = -120.396969 kcal Electronic energy + Delta-G solvation = -29340.932291 eV Core-core repulsion = 25286.117248 eV Total energy + Delta-G solvation = -4054.815043 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.21707 -39.02105 -36.73239 -36.11573 -35.88485 -35.02389 -33.69070 -32.56750 -30.85482 -30.47734 -29.08278 -27.61867 -25.13391 -23.76005 -22.73229 -22.68542 -20.82986 -20.44644 -19.08498 -18.06925 -17.45928 -16.68113 -16.37995 -16.35907 -15.72883 -15.60680 -15.17079 -14.97937 -14.51294 -14.15668 -13.90668 -13.72504 -13.42459 -13.38156 -13.18480 -12.91688 -12.73984 -12.30093 -12.27291 -12.26161 -11.83386 -11.79048 -11.70432 -11.60134 -11.30244 -11.06624 -10.93076 -10.69226 -10.64431 -10.60419 -10.32444 -10.23374 -10.06636 -9.99970 -9.39546 -8.88980 -8.71555 -8.46877 -8.16498 -6.63378 -4.41403 1.32298 1.48515 1.63721 2.46813 2.93462 3.21489 3.28146 3.50193 3.86479 3.97407 4.25482 4.60104 4.80821 4.90667 5.06144 5.08947 5.13961 5.18441 5.20507 5.37328 5.42567 5.45143 5.51994 5.56285 5.57975 5.72826 5.75972 5.82871 5.98541 6.06019 6.13065 6.14658 6.21960 6.37958 6.43580 6.53040 6.58675 6.60485 6.64220 6.71884 6.87114 7.23062 7.52778 7.97353 8.04537 8.80865 8.89810 10.38146 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010217 B = 0.005698 C = 0.004577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.978948 B = 4912.577667 C = 6115.440878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C -0.136 4.136 3 C 0.007 3.993 4 C -0.144 4.144 5 C -0.086 4.086 6 C -0.148 4.148 7 C -0.029 4.029 8 C -0.644 4.644 9 S 2.525 3.475 10 O -0.992 6.992 11 O -0.946 6.946 12 N -0.837 5.837 13 C -0.268 4.268 14 H 0.100 0.900 15 C 0.094 3.906 16 N -0.820 5.820 17 Si 0.838 3.162 18 H -0.222 1.222 19 H -0.283 1.283 20 H -0.254 1.254 21 C 0.148 3.852 22 C -0.137 4.137 23 C 0.471 3.529 24 O -0.514 6.514 25 O -0.362 6.362 26 C 0.035 3.965 27 H 0.055 0.945 28 H 0.062 0.938 29 H 0.083 0.917 30 H 0.080 0.920 31 H 0.106 0.894 32 H 0.122 0.878 33 H 0.121 0.879 34 H 0.124 0.876 35 H 0.133 0.867 36 H 0.284 0.716 37 H 0.085 0.915 38 H 0.070 0.930 39 H 0.114 0.886 40 H 0.118 0.882 41 H 0.097 0.903 42 H 0.061 0.939 43 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.675 5.854 -4.243 9.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.173 4.173 3 C 0.006 3.994 4 C -0.163 4.163 5 C -0.104 4.104 6 C -0.167 4.167 7 C -0.048 4.048 8 C -0.724 4.724 9 S 2.629 3.371 10 O -0.981 6.981 11 O -0.935 6.935 12 N -0.662 5.662 13 C -0.416 4.416 14 H 0.118 0.882 15 C -0.124 4.124 16 N -0.455 5.455 17 Si 0.664 3.336 18 H -0.147 1.147 19 H -0.211 1.211 20 H -0.178 1.178 21 C 0.020 3.980 22 C -0.176 4.176 23 C 0.314 3.686 24 O -0.402 6.402 25 O -0.278 6.278 26 C -0.059 4.059 27 H 0.074 0.926 28 H 0.081 0.919 29 H 0.102 0.898 30 H 0.099 0.901 31 H 0.124 0.876 32 H 0.140 0.860 33 H 0.139 0.861 34 H 0.142 0.858 35 H 0.151 0.849 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.089 0.911 39 H 0.132 0.868 40 H 0.137 0.863 41 H 0.115 0.885 42 H 0.080 0.920 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -7.155 5.291 -4.597 10.016 hybrid contribution -0.176 0.028 -0.581 0.608 sum -7.332 5.319 -5.178 10.433 Atomic orbital electron populations 1.22102 0.94053 1.02963 1.03749 1.21240 0.97132 0.93107 1.05799 1.19474 0.93019 0.94824 0.92066 1.21079 1.01900 0.95819 0.97482 1.21223 0.97009 0.94291 0.97904 1.21205 1.02205 1.00177 0.93089 1.20919 0.92599 0.92771 0.98526 1.31719 1.13605 1.05470 1.21586 1.11081 0.75018 0.78068 0.72943 1.93380 1.30726 1.87541 1.86466 1.93477 1.74387 1.41800 1.83819 1.52932 1.36908 1.38708 1.37668 1.18958 0.96101 1.00495 1.26032 0.88197 1.25850 0.97398 0.97113 0.92024 1.69726 1.23224 1.19212 1.33374 0.87455 0.82418 0.84082 0.79679 1.14660 1.21058 1.17773 1.21012 0.92630 0.88181 0.96166 1.22076 0.97641 0.94259 1.03662 1.23992 0.78168 0.90354 0.76062 1.90623 1.67641 1.33591 1.48364 1.86552 1.46399 1.40149 1.54733 1.23209 0.94960 0.85686 1.02087 0.92572 0.91934 0.89812 0.90148 0.87578 0.86039 0.86089 0.85790 0.84908 0.90544 0.89694 0.91124 0.86817 0.86349 0.88463 0.92013 0.92075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.93 9.80 37.16 0.36 -2.57 16 2 C -0.14 -2.46 5.48 -27.88 -0.15 -2.61 16 3 C 0.01 0.14 5.13 -104.63 -0.54 -0.40 16 4 C -0.14 -2.32 9.67 -39.58 -0.38 -2.70 16 5 C -0.09 -1.27 10.05 -39.58 -0.40 -1.67 16 6 C -0.15 -2.33 10.05 -39.58 -0.40 -2.73 16 7 C -0.03 -0.55 9.51 -39.58 -0.38 -0.93 16 8 C -0.64 -13.53 5.81 -39.58 -0.23 -13.76 16 9 S 2.52 59.11 2.90 -107.50 -0.31 58.80 16 10 O -0.99 -23.64 14.56 -57.17 -0.83 -24.47 16 11 O -0.95 -24.47 9.60 -57.17 -0.55 -25.02 16 12 N -0.84 -18.60 1.47 -59.91 -0.09 -18.69 16 13 C -0.27 -6.55 9.65 -15.06 -0.15 -6.69 16 14 H 0.10 2.47 8.06 -52.48 -0.42 2.05 16 15 C 0.09 2.44 4.81 -17.43 -0.08 2.36 16 16 N -0.82 -22.04 13.97 55.49 0.78 -21.27 16 17 Si 0.84 20.52 24.55 -169.99 -4.17 16.34 16 18 H -0.22 -5.72 5.87 56.52 0.33 -5.39 16 19 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 20 H -0.25 -5.82 5.98 56.52 0.34 -5.48 16 21 C 0.15 2.79 3.46 -4.04 -0.01 2.78 16 22 C -0.14 -2.45 5.78 -27.88 -0.16 -2.61 16 23 C 0.47 7.89 7.96 36.01 0.29 8.17 16 24 O -0.51 -9.28 15.68 -18.75 -0.29 -9.57 16 25 O -0.36 -5.37 10.57 -39.26 -0.41 -5.78 16 26 C 0.03 0.37 10.56 101.05 1.07 1.44 16 27 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.94 8.14 -51.93 -0.42 0.52 16 29 H 0.08 1.66 5.22 -51.93 -0.27 1.38 16 30 H 0.08 1.19 8.00 -51.92 -0.42 0.77 16 31 H 0.11 2.18 5.52 -51.93 -0.29 1.90 16 32 H 0.12 1.57 8.04 -52.49 -0.42 1.15 16 33 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 34 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 35 H 0.13 2.31 6.00 -52.48 -0.32 1.99 16 36 H 0.28 7.16 8.31 -40.82 -0.34 6.82 16 37 H 0.08 1.46 8.07 -51.93 -0.42 1.04 16 38 H 0.07 1.29 7.41 -51.93 -0.39 0.90 16 39 H 0.11 2.15 6.96 -51.93 -0.36 1.79 16 40 H 0.12 2.00 8.14 -51.93 -0.42 1.58 16 41 H 0.10 0.75 8.14 -51.93 -0.42 0.33 16 42 H 0.06 0.63 8.13 -51.93 -0.42 0.21 16 43 H 0.06 0.65 8.13 -51.93 -0.42 0.22 16 LS Contribution 356.51 15.07 5.37 5.37 Total: -1.00 -30.59 356.51 -7.63 -38.21 By element: Atomic # 1 Polarization: 13.93 SS G_CDS: -5.95 Total: 7.98 kcal Atomic # 6 Polarization: -20.75 SS G_CDS: -1.16 Total: -21.91 kcal Atomic # 7 Polarization: -40.64 SS G_CDS: 0.69 Total: -39.96 kcal Atomic # 8 Polarization: -62.75 SS G_CDS: -2.09 Total: -64.84 kcal Atomic # 14 Polarization: 20.52 SS G_CDS: -4.17 Total: 16.34 kcal Atomic # 16 Polarization: 59.11 SS G_CDS: -0.31 Total: 58.80 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -30.59 -7.63 -38.21 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867739467.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.184 kcal (2) G-P(sol) polarization free energy of solvation -30.588 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.771 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.213 kcal (6) G-S(sol) free energy of system = (1) + (5) -120.397 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds