Wall clock time and date at job start Sat Apr 11 2020 06:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50693 * 109.47280 * 2 1 4 4 C 1.38262 * 120.00354 * 259.96117 * 3 2 1 5 5 C 1.38213 * 119.99455 * 180.27984 * 4 3 2 6 6 C 1.38256 * 120.00736 * 359.74693 * 5 4 3 7 7 C 1.38212 * 119.99500 * 359.97438 * 6 5 4 8 8 C 1.38214 * 119.99712 * 79.71238 * 3 2 1 9 9 S 1.76197 * 120.00037 * 359.97438 * 8 3 2 10 10 O 1.42098 * 106.40688 * 279.66345 * 9 8 3 11 11 O 1.42104 * 106.40384 * 52.58435 * 9 8 3 12 12 N 1.65602 * 107.22142 * 166.12210 * 9 8 3 13 13 C 1.36932 * 120.00028 * 260.53347 * 12 9 8 14 14 H 1.08011 * 120.00066 * 127.37979 * 13 12 9 15 15 C 1.38812 * 120.00200 * 307.37421 * 13 12 9 16 16 N 1.31621 * 120.00208 * 165.32606 * 15 13 12 17 17 Si 1.86804 * 119.99657 * 345.33246 * 15 13 12 18 18 H 1.48493 * 109.47250 * 94.13433 * 17 15 13 19 19 H 1.48504 * 109.46731 * 214.13235 * 17 15 13 20 20 H 1.48500 * 109.47096 * 334.12945 * 17 15 13 21 21 C 1.46505 * 119.99715 * 80.52557 * 12 9 8 22 22 C 1.52999 * 109.46866 * 93.79039 * 21 12 9 23 23 C 1.50701 * 109.47157 * 184.18447 * 22 21 12 24 24 O 1.20823 * 119.99884 * 359.97438 * 23 22 21 25 25 O 1.34230 * 119.99595 * 180.02562 * 23 22 21 26 26 C 1.45202 * 116.99418 * 179.97438 * 25 23 22 27 27 H 1.09000 * 109.46885 * 65.57926 * 1 2 3 28 28 H 1.08999 * 109.47346 * 185.58554 * 1 2 3 29 29 H 1.08996 * 109.46667 * 305.58534 * 1 2 3 30 30 H 1.09011 * 109.46332 * 240.00324 * 2 1 3 31 31 H 1.08999 * 109.47187 * 120.00847 * 2 1 3 32 32 H 1.07992 * 120.00119 * 0.04457 * 4 3 2 33 33 H 1.08003 * 119.99231 * 179.76922 * 5 4 3 34 34 H 1.07999 * 120.00429 * 180.02562 * 6 5 4 35 35 H 1.08005 * 120.00011 * 180.02562 * 7 6 5 36 36 H 0.97003 * 119.99737 * 179.97438 * 16 15 13 37 37 H 1.08999 * 109.47171 * 213.78523 * 21 12 9 38 38 H 1.08991 * 109.47126 * 333.79133 * 21 12 9 39 39 H 1.09004 * 109.47480 * 304.18286 * 22 21 12 40 40 H 1.09007 * 109.47188 * 64.18233 * 22 21 12 41 41 H 1.08998 * 109.47155 * 179.97438 * 26 25 23 42 42 H 1.08999 * 109.47501 * 299.99833 * 26 25 23 43 43 H 1.09001 * 109.47491 * 59.99964 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.4596 2.0030 -1.1790 5 6 2.9258 3.3041 -1.1778 6 6 2.9600 4.0253 0.0013 7 6 2.5274 3.4451 1.1789 8 6 2.0612 2.1435 1.1778 9 16 1.5099 1.4039 2.6790 10 8 0.0912 1.4830 2.6681 11 8 2.2190 0.1791 2.8070 12 7 2.0228 2.3729 3.9201 13 6 3.1480 2.0422 4.6269 14 1 3.9400 2.7660 4.7511 15 6 3.2707 0.7767 5.1841 16 7 4.4435 0.3549 5.6073 17 14 1.7714 -0.3276 5.3330 18 1 1.6966 -1.2228 4.1506 19 1 1.8802 -1.1460 6.5674 20 1 0.5457 0.5081 5.3996 21 6 1.2726 3.5841 4.2618 22 6 0.2708 3.2668 5.3738 23 6 -0.5710 4.4849 5.6541 24 8 -0.3881 5.5025 5.0289 25 8 -1.5233 4.4395 6.5990 26 6 -2.2952 5.6502 6.8155 27 1 -0.3633 0.4249 -0.9357 28 1 -0.3634 -1.0228 0.1000 29 1 -0.3632 0.5980 0.8357 30 1 1.8933 -0.5139 -0.8901 31 1 1.8934 -0.5140 0.8899 32 1 2.4327 1.4399 -2.1001 33 1 3.2630 3.7577 -2.0981 34 1 3.3238 5.0421 0.0022 35 1 2.5537 4.0085 2.1000 36 1 4.5291 -0.5293 5.9970 37 1 1.9633 4.3548 4.6040 38 1 0.7377 3.9405 3.3816 39 1 -0.3726 2.4449 5.0596 40 1 0.8094 2.9815 6.2775 41 1 -3.0286 5.4776 7.6031 42 1 -1.6272 6.4590 7.1115 43 1 -2.8097 5.9228 5.8940 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000867739467.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:50 Heat of formation + Delta-G solvation = -139.218409 kcal Electronic energy + Delta-G solvation = -29341.748450 eV Core-core repulsion = 25286.117248 eV Total energy + Delta-G solvation = -4055.631202 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -41.50453 -40.34346 -38.23740 -38.05771 -37.34160 -36.88292 -35.10488 -34.40694 -32.24629 -32.00822 -30.40119 -28.69761 -26.80348 -25.11264 -24.29076 -24.09293 -22.21394 -21.82966 -20.91200 -19.72670 -18.82885 -18.33198 -17.77817 -17.61880 -17.25374 -17.13260 -16.85238 -16.58763 -16.14129 -15.53264 -15.35194 -15.24693 -14.97059 -14.79768 -14.63518 -14.24543 -14.18770 -13.89294 -13.82103 -13.63813 -13.40859 -13.28034 -13.07623 -12.92962 -12.85313 -12.82288 -12.72193 -12.18229 -12.02863 -11.92081 -11.89869 -11.78611 -11.73247 -11.54268 -11.19958 -10.68588 -10.22259 -9.98010 -9.78365 -8.59324 -6.37642 -0.32144 -0.04290 0.33391 1.12951 1.24751 1.28265 1.49692 1.70829 2.19037 2.33437 2.57704 2.78900 2.90941 3.58710 3.71146 3.80121 3.85295 3.94651 4.00419 4.10688 4.18036 4.21831 4.33717 4.36122 4.37950 4.43219 4.50432 4.52090 4.61755 4.72669 4.76894 4.84327 4.90681 4.97012 5.04604 5.13312 5.21475 5.27503 5.33736 5.38686 5.40685 5.70020 5.96845 6.08513 6.68797 6.89354 7.02112 8.47094 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010217 B = 0.005698 C = 0.004577 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2739.978948 B = 4912.577667 C = 6115.440878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.142 4.142 3 C -0.015 4.015 4 C -0.143 4.143 5 C -0.071 4.071 6 C -0.147 4.147 7 C -0.051 4.051 8 C -0.679 4.679 9 S 2.556 3.444 10 O -1.002 7.002 11 O -0.976 6.976 12 N -0.846 5.846 13 C -0.277 4.277 14 H 0.091 0.909 15 C 0.067 3.933 16 N -0.865 5.865 17 Si 0.847 3.153 18 H -0.247 1.247 19 H -0.270 1.270 20 H -0.237 1.237 21 C 0.140 3.860 22 C -0.140 4.140 23 C 0.480 3.520 24 O -0.529 6.529 25 O -0.367 6.367 26 C 0.026 3.974 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.051 0.949 30 H 0.116 0.884 31 H 0.072 0.928 32 H 0.159 0.841 33 H 0.170 0.830 34 H 0.161 0.839 35 H 0.134 0.866 36 H 0.284 0.716 37 H 0.101 0.899 38 H 0.076 0.924 39 H 0.101 0.899 40 H 0.125 0.875 41 H 0.132 0.868 42 H 0.067 0.933 43 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.612 7.752 -7.029 12.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.179 4.179 3 C -0.017 4.017 4 C -0.161 4.161 5 C -0.089 4.089 6 C -0.165 4.165 7 C -0.069 4.069 8 C -0.764 4.764 9 S 2.661 3.339 10 O -0.992 6.992 11 O -0.965 6.965 12 N -0.673 5.673 13 C -0.421 4.421 14 H 0.109 0.891 15 C -0.146 4.146 16 N -0.502 5.502 17 Si 0.672 3.328 18 H -0.173 1.173 19 H -0.197 1.197 20 H -0.160 1.160 21 C 0.014 3.986 22 C -0.180 4.180 23 C 0.323 3.677 24 O -0.419 6.419 25 O -0.283 6.283 26 C -0.067 4.067 27 H 0.102 0.898 28 H 0.095 0.905 29 H 0.070 0.930 30 H 0.134 0.866 31 H 0.090 0.910 32 H 0.177 0.823 33 H 0.188 0.812 34 H 0.178 0.822 35 H 0.152 0.848 36 H 0.094 0.906 37 H 0.119 0.881 38 H 0.094 0.906 39 H 0.119 0.881 40 H 0.143 0.857 41 H 0.150 0.850 42 H 0.086 0.914 43 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -8.088 7.185 -7.236 13.015 hybrid contribution -0.035 -0.389 -0.030 0.391 sum -8.123 6.796 -7.266 12.844 Atomic orbital electron populations 1.22116 0.93549 1.03551 1.03786 1.21304 0.97727 0.93009 1.05863 1.19766 0.93947 0.95223 0.92746 1.21536 1.00402 0.96741 0.97467 1.21846 0.94248 0.93479 0.99285 1.21670 1.00791 1.01861 0.92220 1.21162 0.93325 0.92133 1.00327 1.31110 1.17566 1.07189 1.20556 1.08491 0.74376 0.77048 0.73939 1.93387 1.30944 1.87638 1.87208 1.93464 1.74898 1.43369 1.84809 1.52799 1.36699 1.39259 1.38528 1.18740 0.96073 0.99941 1.27336 0.89113 1.26162 0.97981 0.98014 0.92431 1.69753 1.23959 1.19834 1.36658 0.87253 0.82594 0.83792 0.79163 1.17278 1.19691 1.16020 1.21209 0.93084 0.87395 0.96904 1.21989 0.97632 0.94734 1.03622 1.23564 0.78360 0.89457 0.76285 1.90610 1.68244 1.33924 1.49086 1.86521 1.45957 1.42194 1.53640 1.23606 0.95244 0.84429 1.03448 0.89822 0.90499 0.93021 0.86587 0.91005 0.82313 0.81230 0.82188 0.84776 0.90562 0.88056 0.90551 0.88118 0.85742 0.84989 0.91412 0.91850 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.70 9.80 71.98 0.71 -4.99 16 2 C -0.14 -4.98 5.48 29.85 0.16 -4.81 16 3 C -0.02 -0.57 5.13 -19.87 -0.10 -0.67 16 4 C -0.14 -3.96 9.67 22.27 0.22 -3.74 16 5 C -0.07 -1.70 10.05 22.27 0.22 -1.48 16 6 C -0.15 -4.04 10.05 22.27 0.22 -3.81 16 7 C -0.05 -1.81 9.51 22.27 0.21 -1.60 16 8 C -0.68 -28.14 5.81 22.27 0.13 -28.01 16 9 S 2.56 122.35 2.90 -56.49 -0.16 122.18 16 10 O -1.00 -48.76 14.56 -128.00 -1.86 -50.62 16 11 O -0.98 -52.59 9.60 -128.00 -1.23 -53.82 16 12 N -0.85 -38.53 1.47 -343.45 -0.51 -39.03 16 13 C -0.28 -14.12 9.65 84.03 0.81 -13.31 16 14 H 0.09 4.71 8.06 -2.91 -0.02 4.69 16 15 C 0.07 3.63 4.81 84.86 0.41 4.04 16 16 N -0.86 -48.81 13.97 21.65 0.30 -48.51 16 17 Si 0.85 42.88 24.55 68.60 1.68 44.57 16 18 H -0.25 -13.41 5.87 99.48 0.58 -12.83 16 19 H -0.27 -12.89 7.11 99.48 0.71 -12.19 16 20 H -0.24 -11.12 5.98 99.48 0.59 -10.53 16 21 C 0.14 5.37 3.46 86.38 0.30 5.67 16 22 C -0.14 -5.06 5.78 29.85 0.17 -4.89 16 23 C 0.48 15.79 7.96 71.24 0.57 16.36 16 24 O -0.53 -18.65 15.68 21.97 0.34 -18.30 16 25 O -0.37 -10.45 10.57 -51.42 -0.54 -10.99 16 26 C 0.03 0.50 10.56 113.37 1.20 1.70 16 27 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 28 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 29 H 0.05 2.04 5.22 -2.39 -0.01 2.02 16 30 H 0.12 3.12 8.00 -2.38 -0.02 3.10 16 31 H 0.07 3.02 5.52 -2.39 -0.01 3.01 16 32 H 0.16 3.16 8.04 -2.91 -0.02 3.13 16 33 H 0.17 2.47 8.06 -2.91 -0.02 2.44 16 34 H 0.16 3.18 8.06 -2.91 -0.02 3.16 16 35 H 0.13 4.59 6.00 -2.91 -0.02 4.58 16 36 H 0.28 15.13 8.31 -92.71 -0.77 14.36 16 37 H 0.10 3.50 8.07 -2.39 -0.02 3.48 16 38 H 0.08 2.80 7.41 -2.39 -0.02 2.78 16 39 H 0.10 3.89 6.96 -2.38 -0.02 3.87 16 40 H 0.12 4.28 8.14 -2.38 -0.02 4.26 16 41 H 0.13 1.64 8.14 -2.39 -0.02 1.63 16 42 H 0.07 1.26 8.13 -2.39 -0.02 1.24 16 43 H 0.06 1.22 8.13 -2.39 -0.02 1.20 16 Total: -1.00 -70.27 356.51 4.04 -66.23 By element: Atomic # 1 Polarization: 27.06 SS G_CDS: 0.79 Total: 27.85 kcal Atomic # 6 Polarization: -44.77 SS G_CDS: 5.22 Total: -39.54 kcal Atomic # 7 Polarization: -87.34 SS G_CDS: -0.20 Total: -87.54 kcal Atomic # 8 Polarization: -130.45 SS G_CDS: -3.29 Total: -133.74 kcal Atomic # 14 Polarization: 42.88 SS G_CDS: 1.68 Total: 44.57 kcal Atomic # 16 Polarization: 122.35 SS G_CDS: -0.16 Total: 122.18 kcal Total: -70.27 4.04 -66.23 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000867739467.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.989 kcal (2) G-P(sol) polarization free energy of solvation -70.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.229 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.218 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds