Wall clock time and date at job start Sat Apr 11 2020 06:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 O 1.45199 * 109.47115 * 2 1 4 4 C 1.34225 * 117.00011 * 180.02562 * 3 2 1 5 5 O 1.20826 * 120.00385 * 0.02562 * 4 3 2 6 6 C 1.50703 * 119.99983 * 180.02562 * 4 3 2 7 7 C 1.52999 * 109.47300 * 179.97438 * 6 4 3 8 8 H 1.09003 * 109.47097 * 54.99874 * 7 6 4 9 9 C 1.50697 * 109.47364 * 174.99804 * 7 6 4 10 10 H 1.08001 * 120.00308 * 239.99779 * 9 7 6 11 11 C 1.37881 * 119.99712 * 60.00075 * 9 7 6 12 12 N 1.31516 * 120.00053 * 359.97438 * 11 9 7 13 13 Si 1.86795 * 119.99686 * 179.97438 * 11 9 7 14 14 H 1.48503 * 109.47242 * 90.00489 * 13 11 9 15 15 H 1.48507 * 109.47158 * 210.00014 * 13 11 9 16 16 H 1.48501 * 109.47582 * 329.99799 * 13 11 9 17 17 O 1.45205 * 109.47223 * 295.00549 * 7 6 4 18 18 C 1.34871 * 117.00291 * 150.00057 * 17 7 6 19 19 O 1.21613 * 120.00048 * 359.97438 * 18 17 7 20 20 C 1.46507 * 119.99934 * 180.26946 * 18 17 7 21 21 S 1.76215 * 126.17558 * 359.41564 * 20 18 17 22 22 C 1.70928 * 90.36852 * 179.97438 * 21 20 18 23 23 C 1.50693 * 124.70716 * 180.09912 * 22 21 20 24 24 C 1.52994 * 109.47365 * 270.22519 * 23 22 21 25 25 N 1.29394 * 110.58281 * 0.29903 * 22 21 20 26 26 C 1.30912 * 117.47206 * 359.76474 * 25 22 21 27 27 C 1.50703 * 123.03428 * 180.02562 * 26 25 22 28 28 H 1.09000 * 109.47639 * 60.00032 * 1 2 3 29 29 H 1.09004 * 109.46846 * 180.02562 * 1 2 3 30 30 H 1.09004 * 109.46782 * 299.99101 * 1 2 3 31 31 H 1.09010 * 109.46780 * 240.00163 * 2 1 3 32 32 H 1.08996 * 109.47719 * 120.00710 * 2 1 3 33 33 H 1.09000 * 109.46738 * 60.00063 * 6 4 3 34 34 H 1.09005 * 109.47073 * 299.99750 * 6 4 3 35 35 H 0.96999 * 120.00065 * 179.97438 * 12 11 9 36 36 H 1.09000 * 109.47437 * 30.23203 * 23 22 21 37 37 H 1.09001 * 109.47108 * 150.22699 * 23 22 21 38 38 H 1.09005 * 109.47591 * 179.97438 * 24 23 22 39 39 H 1.09000 * 109.47401 * 300.00706 * 24 23 22 40 40 H 1.09004 * 109.46944 * 60.00555 * 24 23 22 41 41 H 1.08997 * 109.46766 * 269.97382 * 27 26 25 42 42 H 1.08998 * 109.47342 * 29.97045 * 27 26 25 43 43 H 1.08998 * 109.46869 * 149.97447 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3447 1.5448 -0.0005 5 8 4.0808 0.5867 -0.0015 6 6 3.9207 2.9374 0.0000 7 6 5.4486 2.8574 -0.0001 8 1 5.7805 2.2501 -0.8422 9 6 6.0243 4.2446 -0.1235 10 1 6.6591 4.4934 -0.9611 11 6 5.7407 5.1962 0.8332 12 7 4.9673 4.8934 1.8529 13 14 6.4549 6.9155 0.6807 14 1 5.5207 7.7729 -0.0923 15 1 6.6502 7.4923 2.0351 16 1 7.7615 6.8483 -0.0219 17 8 5.9018 2.2537 1.2403 18 6 7.0519 1.5507 1.1947 19 8 7.6589 1.4451 0.1463 20 6 7.5666 0.9088 2.4070 21 16 6.8274 0.9615 4.0058 22 6 8.0905 -0.0038 4.6337 23 6 8.1979 -0.4486 6.0695 24 6 8.9833 0.5931 6.8687 25 7 8.9439 -0.2961 3.7060 26 6 8.7105 0.1657 2.5035 27 6 9.6200 -0.0984 1.3312 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5137 0.8901 31 1 1.8933 -0.5139 -0.8901 32 1 1.8934 -0.5139 0.8899 33 1 3.5851 3.4690 0.8905 34 1 3.5843 3.4701 -0.8896 35 1 4.7681 5.5628 2.5261 36 1 7.1991 -0.5541 6.4929 37 1 8.7149 -1.4071 6.1152 38 1 9.0606 0.2716 7.9074 39 1 9.9821 0.6986 6.4453 40 1 8.4662 1.5516 6.8231 41 1 10.3726 0.6878 1.2710 42 1 10.1113 -1.0624 1.4624 43 1 9.0338 -0.1114 0.4123 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000870620871.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:07 Heat of formation + Delta-G solvation = -146.068476 kcal Electronic energy + Delta-G solvation = -27949.918289 eV Core-core repulsion = 23893.990046 eV Total energy + Delta-G solvation = -4055.928243 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.95028 -39.75826 -38.63956 -36.23361 -35.31060 -34.14021 -33.12562 -31.61657 -30.66242 -30.31660 -28.12093 -26.28743 -25.39163 -23.41016 -22.51525 -21.80625 -21.27423 -19.83378 -18.84007 -17.73423 -17.21214 -16.56078 -16.29957 -16.06529 -15.45045 -15.39208 -15.22333 -14.66202 -14.49957 -14.11334 -13.92656 -13.80299 -13.31294 -12.99905 -12.87047 -12.71904 -12.38691 -12.27448 -12.09529 -11.91815 -11.80780 -11.67492 -11.53915 -11.30309 -11.25028 -11.07030 -10.98640 -10.92435 -10.80445 -10.32017 -10.16810 -9.74500 -9.60153 -9.50596 -9.31053 -9.13314 -8.84106 -8.77381 -8.38058 -6.29557 -4.46939 0.56108 1.53293 2.01388 2.76288 2.97547 3.15670 3.24910 3.27287 3.31740 3.79541 3.83408 4.14980 4.23049 4.85672 5.03352 5.06465 5.06720 5.10558 5.13282 5.33919 5.36397 5.45408 5.50600 5.66912 5.80391 5.82846 5.87918 5.93658 5.96563 6.04113 6.06309 6.11974 6.14991 6.29713 6.55079 6.61843 6.86170 6.96970 7.22393 7.62324 7.82425 7.89969 7.92334 8.47173 8.60160 8.98167 9.29610 10.72818 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.007761 B = 0.004707 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3606.787258 B = 5947.469712 C = 7833.391151 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.059 3.941 3 O -0.365 6.365 4 C 0.456 3.544 5 O -0.516 6.516 6 C -0.102 4.102 7 C 0.232 3.768 8 H 0.048 0.952 9 C -0.547 4.547 10 H 0.071 0.929 11 C 0.082 3.918 12 N -0.859 5.859 13 Si 0.897 3.103 14 H -0.275 1.275 15 H -0.283 1.283 16 H -0.271 1.271 17 O -0.325 6.325 18 C 0.543 3.457 19 O -0.511 6.511 20 C -0.264 4.264 21 S 0.221 5.779 22 C 0.027 3.973 23 C -0.045 4.045 24 C -0.147 4.147 25 N -0.479 5.479 26 C 0.133 3.867 27 C -0.085 4.085 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.065 0.935 31 H 0.063 0.937 32 H 0.064 0.936 33 H 0.141 0.859 34 H 0.105 0.895 35 H 0.268 0.732 36 H 0.086 0.914 37 H 0.092 0.908 38 H 0.066 0.934 39 H 0.061 0.939 40 H 0.059 0.941 41 H 0.078 0.922 42 H 0.069 0.931 43 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.245 -8.301 6.490 10.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.016 4.016 3 O -0.283 6.283 4 C 0.301 3.699 5 O -0.404 6.404 6 C -0.140 4.140 7 C 0.179 3.821 8 H 0.066 0.934 9 C -0.583 4.583 10 H 0.089 0.911 11 C -0.125 4.125 12 N -0.495 5.495 13 Si 0.724 3.276 14 H -0.200 1.200 15 H -0.208 1.208 16 H -0.195 1.195 17 O -0.239 6.239 18 C 0.386 3.614 19 O -0.404 6.404 20 C -0.387 4.387 21 S 0.480 5.520 22 C -0.247 4.247 23 C -0.086 4.086 24 C -0.206 4.206 25 N -0.194 5.194 26 C -0.006 4.006 27 C -0.144 4.144 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.084 0.916 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.159 0.841 34 H 0.123 0.877 35 H 0.078 0.922 36 H 0.104 0.896 37 H 0.111 0.889 38 H 0.085 0.915 39 H 0.081 0.919 40 H 0.078 0.922 41 H 0.096 0.904 42 H 0.088 0.912 43 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -2.518 -8.396 6.962 11.194 hybrid contribution 0.895 0.659 -0.745 1.338 sum -1.623 -7.737 6.217 10.057 Atomic orbital electron populations 1.21778 0.93249 1.02338 1.03342 1.22863 0.94880 0.81767 1.02050 1.86574 1.26060 1.31002 1.84704 1.24918 0.79524 0.94309 0.71155 1.90602 1.60240 1.43679 1.45895 1.21880 0.96517 0.88165 1.07389 1.20110 0.88119 0.92604 0.81252 0.93380 1.21375 1.32430 0.94139 1.10385 0.91063 1.25111 0.93796 0.99188 0.94421 1.69858 1.34259 1.34545 1.10813 0.86498 0.79956 0.83386 0.77750 1.20047 1.20840 1.19529 1.86705 1.35697 1.59375 1.42168 1.19028 0.80963 0.75963 0.85410 1.90705 1.59100 1.59716 1.30910 1.25193 1.02977 1.12448 0.98078 1.84198 1.23799 1.44101 0.99880 1.27414 0.95831 1.00898 1.00542 1.20209 1.02251 1.00401 0.85759 1.21785 1.00761 0.98584 0.99492 1.65983 1.29457 1.24332 0.99665 1.20874 0.93265 0.93489 0.92960 1.20594 0.97835 1.01838 0.94102 0.91683 0.90837 0.91586 0.91857 0.91767 0.84125 0.87667 0.92184 0.89598 0.88911 0.91467 0.91938 0.92152 0.90354 0.91175 0.88229 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 10.29 37.16 0.38 -1.22 16 2 C 0.06 0.86 6.19 37.16 0.23 1.09 16 3 O -0.37 -6.70 10.22 -39.24 -0.40 -7.10 16 4 C 0.46 9.73 7.84 36.01 0.28 10.01 16 5 O -0.52 -12.18 15.17 -23.95 -0.36 -12.55 16 6 C -0.10 -2.28 5.23 -27.88 -0.15 -2.43 16 7 C 0.23 5.89 1.65 -27.88 -0.05 5.84 16 8 H 0.05 1.28 6.97 -51.93 -0.36 0.91 16 9 C -0.55 -14.49 8.92 -34.44 -0.31 -14.80 16 10 H 0.07 1.91 7.81 -52.49 -0.41 1.50 16 11 C 0.08 2.10 5.25 -17.82 -0.09 2.01 16 12 N -0.86 -22.17 10.93 55.43 0.61 -21.57 16 13 Si 0.90 20.05 29.54 -169.99 -5.02 15.03 16 14 H -0.27 -5.96 7.11 56.52 0.40 -5.56 16 15 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 16 H -0.27 -6.17 7.11 56.52 0.40 -5.76 16 17 O -0.32 -8.38 8.43 -46.19 -0.39 -8.77 16 18 C 0.54 13.44 7.89 34.06 0.27 13.71 16 19 O -0.51 -13.18 13.59 -19.35 -0.26 -13.44 16 20 C -0.26 -5.61 6.52 -36.79 -0.24 -5.85 16 21 S 0.22 3.87 23.04 -107.50 -2.48 1.40 16 22 C 0.03 0.42 6.63 -13.31 -0.09 0.33 16 23 C -0.05 -0.48 6.51 -27.89 -0.18 -0.67 16 24 C -0.15 -1.41 9.89 37.15 0.37 -1.05 16 25 N -0.48 -8.33 10.49 -7.48 -0.08 -8.41 16 26 C 0.13 2.53 6.83 -83.52 -0.57 1.96 16 27 C -0.08 -1.44 9.72 36.01 0.35 -1.09 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.91 8.13 -51.92 -0.42 0.49 16 32 H 0.06 0.95 8.13 -51.93 -0.42 0.53 16 33 H 0.14 3.34 6.22 -51.93 -0.32 3.02 16 34 H 0.11 2.13 8.14 -51.93 -0.42 1.71 16 35 H 0.27 6.56 8.31 -40.82 -0.34 6.23 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.09 0.90 8.14 -51.93 -0.42 0.48 16 38 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 40 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.08 1.26 8.14 -51.93 -0.42 0.84 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.10 1.86 6.06 -51.93 -0.31 1.54 16 LS Contribution 383.28 15.07 5.78 5.78 Total: -1.00 -31.20 383.28 -8.44 -39.64 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -6.04 Total: 2.13 kcal Atomic # 6 Polarization: 7.64 SS G_CDS: 0.21 Total: 7.85 kcal Atomic # 7 Polarization: -30.51 SS G_CDS: 0.53 Total: -29.98 kcal Atomic # 8 Polarization: -40.44 SS G_CDS: -1.42 Total: -41.85 kcal Atomic # 14 Polarization: 20.05 SS G_CDS: -5.02 Total: 15.03 kcal Atomic # 16 Polarization: 3.87 SS G_CDS: -2.48 Total: 1.40 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.20 -8.44 -39.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000870620871.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.424 kcal (2) G-P(sol) polarization free energy of solvation -31.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.645 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.068 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds