Wall clock time and date at job start Sat Apr 11 2020 06:16:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53011 * 109.46606 * 2 1 4 4 C 1.52993 * 109.47009 * 299.99735 * 3 2 1 5 5 O 1.42900 * 109.47840 * 300.00396 * 4 3 2 6 6 C 1.42897 * 114.00293 * 180.02562 * 5 4 3 7 7 N 1.46496 * 109.47176 * 60.00517 * 3 2 1 8 8 C 1.34777 * 120.00443 * 59.99704 * 7 3 2 9 9 O 1.21762 * 119.99461 * 359.72350 * 8 7 3 10 10 C 1.46235 * 120.00123 * 180.02562 * 8 7 3 11 11 S 1.75671 * 125.22703 * 359.74780 * 10 8 7 12 12 C 1.75473 * 92.08872 * 179.97438 * 11 10 8 13 13 C 1.32757 * 111.36442 * 0.02562 * 12 11 10 14 14 C 1.39544 * 125.22940 * 179.44185 * 10 8 7 15 15 C 1.40541 * 123.71294 * 359.97438 * 14 10 8 16 16 H 1.07998 * 119.99734 * 23.43742 * 15 14 10 17 17 C 1.40304 * 119.99774 * 203.43673 * 15 14 10 18 18 N 1.30639 * 120.00217 * 9.78715 * 17 15 14 19 19 Si 1.86801 * 119.99643 * 189.79305 * 17 15 14 20 20 H 1.48501 * 109.47426 * 60.00375 * 19 17 15 21 21 H 1.48500 * 109.47010 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47187 * 299.99907 * 19 17 15 23 23 C 1.50703 * 109.46620 * 180.02562 * 3 2 1 24 24 O 1.20830 * 120.00067 * 24.99886 * 23 3 2 25 25 O 1.34231 * 119.99753 * 204.99802 * 23 3 2 26 26 C 1.45201 * 116.99520 * 179.97438 * 25 23 3 27 27 H 1.09000 * 109.47434 * 299.99843 * 1 2 3 28 28 H 1.09003 * 109.47653 * 59.99788 * 1 2 3 29 29 H 1.08998 * 109.46830 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47145 * 240.00622 * 2 1 3 31 31 H 1.08996 * 109.47283 * 119.99637 * 2 1 3 32 32 H 1.09002 * 109.47286 * 60.00990 * 4 3 2 33 33 H 1.09006 * 109.46768 * 180.02562 * 4 3 2 34 34 H 1.09005 * 109.46752 * 299.99823 * 6 5 4 35 35 H 1.08999 * 109.47522 * 59.99797 * 6 5 4 36 36 H 1.09001 * 109.46787 * 180.02562 * 6 5 4 37 37 H 0.97004 * 119.99621 * 239.99579 * 7 3 2 38 38 H 1.08007 * 124.31201 * 179.97438 * 12 11 10 39 39 H 1.08004 * 122.78239 * 180.02562 * 13 12 11 40 40 H 0.97003 * 120.00034 * 179.97438 * 18 17 15 41 41 H 1.09004 * 109.46490 * 180.02562 * 26 25 23 42 42 H 1.08994 * 109.47594 * 299.99709 * 26 25 23 43 43 H 1.09000 * 109.47060 * 60.00764 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5299 2.1638 -1.2492 5 8 2.0062 1.4902 -2.4161 6 6 1.5849 2.0868 -3.6443 7 7 1.5516 2.1332 1.1962 8 6 1.8773 1.6727 2.4203 9 8 2.5732 0.6798 2.5319 10 6 1.3894 2.3618 3.6143 11 16 0.3796 3.7993 3.6132 12 6 0.3377 3.8494 5.3667 13 6 1.0366 2.8524 5.8959 14 6 1.6493 1.9749 4.9296 15 6 2.4255 0.8552 5.2745 16 1 3.1532 0.4671 4.5772 17 6 2.2549 0.2415 6.5246 18 7 1.2525 0.5841 7.2892 19 14 3.4613 -1.0652 7.0959 20 1 4.8257 -0.4829 7.1653 21 1 3.0629 -1.5527 8.4409 22 1 3.4549 -2.1984 6.1362 23 6 3.5469 1.4426 -0.0006 24 8 4.1509 0.4943 -0.4432 25 8 4.2182 2.4962 0.4905 26 6 5.6682 2.4270 0.4583 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.4399 2.1638 -1.2492 33 1 1.8935 3.1914 -1.2494 34 1 0.4960 2.0855 -3.6941 35 1 1.9497 3.1128 -3.6938 36 1 1.9873 1.5169 -4.4818 37 1 0.9939 2.9218 1.1072 38 1 -0.1888 4.5965 5.9421 39 1 1.1339 2.7076 6.9617 40 1 1.1344 0.1596 8.1533 41 1 6.0850 3.3397 0.8843 42 1 6.0041 1.5687 1.0400 43 1 6.0041 2.3208 -0.5733 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000875782274.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:18 Heat of formation + Delta-G solvation = -140.802238 kcal Electronic energy + Delta-G solvation = -29006.430409 eV Core-core repulsion = 24950.730527 eV Total energy + Delta-G solvation = -4055.699882 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.59930 -38.60196 -37.87077 -36.29592 -35.96866 -34.81563 -33.09534 -31.74617 -29.44915 -28.82066 -27.55846 -26.61756 -25.72517 -24.75222 -22.37649 -21.95963 -20.59615 -19.05812 -18.81616 -17.87335 -17.40343 -16.66603 -16.37137 -16.05275 -15.72513 -15.64171 -15.36785 -15.09275 -14.29011 -14.13655 -13.94132 -13.76841 -13.42458 -12.95949 -12.87992 -12.48651 -12.35994 -12.17507 -12.08976 -11.87140 -11.74950 -11.65968 -11.49301 -11.39335 -11.17136 -11.01629 -10.73988 -10.65363 -10.47830 -10.36405 -10.17367 -10.08381 -9.74247 -9.65438 -9.28224 -8.51326 -8.40415 -7.53045 -7.16920 -7.08072 -4.56599 2.12180 2.64726 2.97415 2.98753 3.02968 3.03436 3.09519 3.27840 3.60779 3.77387 3.83244 4.24606 4.36148 4.72097 4.82365 5.06856 5.17060 5.17663 5.23567 5.34103 5.38360 5.44257 5.49012 5.50165 5.68180 5.74977 5.84145 6.01212 6.04674 6.31886 6.51301 6.59392 6.74019 6.79779 6.80869 6.92671 7.06576 7.13082 7.17410 7.43138 7.65720 8.21659 8.29924 8.35997 8.55540 8.71685 9.48427 9.82583 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012527 B = 0.004267 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.593879 B = 6560.352319 C = 7372.979250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.122 4.122 3 C 0.207 3.793 4 C 0.059 3.941 5 O -0.377 6.377 6 C 0.032 3.968 7 N -0.733 5.733 8 C 0.609 3.391 9 O -0.554 6.554 10 C -0.427 4.427 11 S -0.052 6.052 12 C -0.204 4.204 13 C -0.099 4.099 14 C 0.142 3.858 15 C -0.374 4.374 16 H 0.111 0.889 17 C 0.068 3.932 18 N -0.776 5.776 19 Si 0.924 3.076 20 H -0.259 1.259 21 H -0.276 1.276 22 H -0.258 1.258 23 C 0.477 3.523 24 O -0.500 6.500 25 O -0.350 6.350 26 C 0.038 3.962 27 H 0.061 0.939 28 H 0.048 0.952 29 H 0.057 0.943 30 H 0.081 0.919 31 H 0.096 0.904 32 H 0.077 0.923 33 H 0.063 0.937 34 H 0.043 0.957 35 H 0.041 0.959 36 H 0.088 0.912 37 H 0.395 0.605 38 H 0.137 0.863 39 H 0.145 0.855 40 H 0.289 0.711 41 H 0.096 0.904 42 H 0.062 0.938 43 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.865 4.934 -11.037 12.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.160 4.160 3 C 0.117 3.883 4 C -0.018 4.018 5 O -0.294 6.294 6 C -0.065 4.065 7 N -0.390 5.390 8 C 0.407 3.593 9 O -0.436 6.436 10 C -0.545 4.545 11 S 0.203 5.797 12 C -0.338 4.338 13 C -0.131 4.131 14 C 0.131 3.869 15 C -0.404 4.404 16 H 0.129 0.871 17 C -0.154 4.154 18 N -0.400 5.400 19 Si 0.747 3.253 20 H -0.184 1.184 21 H -0.201 1.201 22 H -0.182 1.182 23 C 0.318 3.682 24 O -0.386 6.386 25 O -0.266 6.266 26 C -0.056 4.056 27 H 0.081 0.919 28 H 0.067 0.933 29 H 0.076 0.924 30 H 0.100 0.900 31 H 0.114 0.886 32 H 0.095 0.905 33 H 0.081 0.919 34 H 0.062 0.938 35 H 0.060 0.940 36 H 0.106 0.894 37 H 0.229 0.771 38 H 0.155 0.845 39 H 0.163 0.837 40 H 0.100 0.900 41 H 0.114 0.886 42 H 0.080 0.920 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -0.758 4.614 -11.966 12.847 hybrid contribution 0.651 -0.623 1.391 1.658 sum -0.106 3.991 -10.575 11.303 Atomic orbital electron populations 1.21736 0.94986 1.01835 1.01588 1.21795 0.96166 0.92875 1.05172 1.19784 0.86071 0.95994 0.86414 1.22635 0.99451 0.95299 0.84421 1.87965 1.74627 1.53613 1.13231 1.22776 0.99183 0.98148 0.86363 1.45785 1.56685 1.32690 1.03806 1.16773 0.78912 0.82945 0.80638 1.90664 1.40498 1.26895 1.85542 1.22406 1.27265 1.09940 0.94923 1.82673 1.58699 1.33213 1.05112 1.24933 1.08074 1.04307 0.96454 1.21718 0.97233 0.92902 1.01249 1.17903 0.88835 0.91892 0.88262 1.20023 1.14824 1.07241 0.98348 0.87094 1.26372 0.95311 0.98086 0.95618 1.69660 1.24610 1.35806 1.09908 0.86066 0.80699 0.80416 0.78085 1.18350 1.20077 1.18177 1.23757 0.91297 0.79989 0.73163 1.90588 1.69880 1.34901 1.43233 1.86542 1.21426 1.43415 1.75170 1.23164 0.77229 1.03413 1.01791 0.91946 0.93289 0.92436 0.90041 0.88571 0.90542 0.91930 0.93796 0.94004 0.89375 0.77075 0.84503 0.83748 0.89983 0.88555 0.91957 0.92564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.40 37.16 0.35 -1.83 16 2 C -0.12 -2.20 4.17 -26.73 -0.11 -2.31 16 3 C 0.21 3.65 0.55 -132.97 -0.07 3.58 16 4 C 0.06 0.80 4.55 37.15 0.17 0.97 16 5 O -0.38 -5.22 9.65 -35.23 -0.34 -5.56 16 6 C 0.03 0.30 11.01 101.05 1.11 1.41 16 7 N -0.73 -13.83 4.10 -50.11 -0.21 -14.04 16 8 C 0.61 14.33 7.09 -13.05 -0.09 14.24 16 9 O -0.55 -14.63 11.65 5.13 0.06 -14.57 16 10 C -0.43 -10.40 6.51 -35.88 -0.23 -10.63 16 11 S -0.05 -1.06 22.25 -107.50 -2.39 -3.45 16 12 C -0.20 -4.28 11.07 28.86 0.32 -3.96 16 13 C -0.10 -2.34 9.04 -39.13 -0.35 -2.69 16 14 C 0.14 3.69 5.67 -106.21 -0.60 3.09 16 15 C -0.37 -9.88 8.52 -37.94 -0.32 -10.20 16 16 H 0.11 3.10 6.03 -52.49 -0.32 2.78 16 17 C 0.07 1.64 5.39 -17.28 -0.09 1.54 16 18 N -0.78 -18.39 10.82 55.57 0.60 -17.79 16 19 Si 0.92 18.48 29.57 -169.99 -5.03 13.45 16 20 H -0.26 -5.14 7.11 56.52 0.40 -4.73 16 21 H -0.28 -5.20 7.11 56.52 0.40 -4.80 16 22 H -0.26 -5.32 7.11 56.52 0.40 -4.92 16 23 C 0.48 9.57 5.08 36.01 0.18 9.75 16 24 O -0.50 -10.94 15.84 -18.75 -0.30 -11.23 16 25 O -0.35 -6.68 10.17 -39.26 -0.40 -7.08 16 26 C 0.04 0.58 10.56 101.05 1.07 1.65 16 27 H 0.06 1.04 7.60 -51.93 -0.39 0.64 16 28 H 0.05 0.62 6.43 -51.93 -0.33 0.28 16 29 H 0.06 0.81 8.14 -51.93 -0.42 0.38 16 30 H 0.08 1.45 7.41 -51.93 -0.38 1.07 16 31 H 0.10 2.09 6.15 -51.93 -0.32 1.77 16 32 H 0.08 0.87 6.43 -51.93 -0.33 0.54 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 34 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.04 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 37 H 0.39 6.62 7.55 -40.82 -0.31 6.31 16 38 H 0.14 2.43 8.06 -52.48 -0.42 2.01 16 39 H 0.15 3.40 6.40 -52.48 -0.34 3.07 16 40 H 0.29 6.17 8.29 -40.82 -0.34 5.83 16 41 H 0.10 1.18 8.14 -51.93 -0.42 0.75 16 42 H 0.06 1.02 8.13 -51.93 -0.42 0.59 16 43 H 0.06 0.77 8.13 -51.93 -0.42 0.35 16 LS Contribution 369.47 15.07 5.57 5.57 Total: -1.00 -30.93 369.47 -6.78 -37.71 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -5.67 Total: 12.38 kcal Atomic # 6 Polarization: 3.28 SS G_CDS: 1.32 Total: 4.60 kcal Atomic # 7 Polarization: -32.22 SS G_CDS: 0.40 Total: -31.82 kcal Atomic # 8 Polarization: -37.47 SS G_CDS: -0.98 Total: -38.44 kcal Atomic # 14 Polarization: 18.48 SS G_CDS: -5.03 Total: 13.45 kcal Atomic # 16 Polarization: -1.06 SS G_CDS: -2.39 Total: -3.45 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -30.93 -6.78 -37.71 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875782274.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -103.088 kcal (2) G-P(sol) polarization free energy of solvation -30.931 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.020 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.714 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.802 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds