Wall clock time and date at job start Sat Apr 11 2020 06:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53011 * 109.46606 * 2 1 4 4 C 1.52993 * 109.47009 * 299.99735 * 3 2 1 5 5 O 1.42900 * 109.47840 * 300.00396 * 4 3 2 6 6 C 1.42897 * 114.00293 * 180.02562 * 5 4 3 7 7 N 1.46496 * 109.47176 * 60.00517 * 3 2 1 8 8 C 1.34777 * 120.00443 * 59.99704 * 7 3 2 9 9 O 1.21762 * 119.99461 * 359.72350 * 8 7 3 10 10 C 1.46235 * 120.00123 * 180.02562 * 8 7 3 11 11 S 1.75671 * 125.22703 * 359.74780 * 10 8 7 12 12 C 1.75473 * 92.08872 * 179.97438 * 11 10 8 13 13 C 1.32757 * 111.36442 * 0.02562 * 12 11 10 14 14 C 1.39544 * 125.22940 * 179.44185 * 10 8 7 15 15 C 1.40541 * 123.71294 * 359.97438 * 14 10 8 16 16 H 1.07998 * 119.99734 * 23.43742 * 15 14 10 17 17 C 1.40304 * 119.99774 * 203.43673 * 15 14 10 18 18 N 1.30639 * 120.00217 * 9.78715 * 17 15 14 19 19 Si 1.86801 * 119.99643 * 189.79305 * 17 15 14 20 20 H 1.48501 * 109.47426 * 60.00375 * 19 17 15 21 21 H 1.48500 * 109.47010 * 179.97438 * 19 17 15 22 22 H 1.48498 * 109.47187 * 299.99907 * 19 17 15 23 23 C 1.50703 * 109.46620 * 180.02562 * 3 2 1 24 24 O 1.20830 * 120.00067 * 24.99886 * 23 3 2 25 25 O 1.34231 * 119.99753 * 204.99802 * 23 3 2 26 26 C 1.45201 * 116.99520 * 179.97438 * 25 23 3 27 27 H 1.09000 * 109.47434 * 299.99843 * 1 2 3 28 28 H 1.09003 * 109.47653 * 59.99788 * 1 2 3 29 29 H 1.08998 * 109.46830 * 180.02562 * 1 2 3 30 30 H 1.09000 * 109.47145 * 240.00622 * 2 1 3 31 31 H 1.08996 * 109.47283 * 119.99637 * 2 1 3 32 32 H 1.09002 * 109.47286 * 60.00990 * 4 3 2 33 33 H 1.09006 * 109.46768 * 180.02562 * 4 3 2 34 34 H 1.09005 * 109.46752 * 299.99823 * 6 5 4 35 35 H 1.08999 * 109.47522 * 59.99797 * 6 5 4 36 36 H 1.09001 * 109.46787 * 180.02562 * 6 5 4 37 37 H 0.97004 * 119.99621 * 239.99579 * 7 3 2 38 38 H 1.08007 * 124.31201 * 179.97438 * 12 11 10 39 39 H 1.08004 * 122.78239 * 180.02562 * 13 12 11 40 40 H 0.97003 * 120.00034 * 179.97438 * 18 17 15 41 41 H 1.09004 * 109.46490 * 180.02562 * 26 25 23 42 42 H 1.08994 * 109.47594 * 299.99709 * 26 25 23 43 43 H 1.09000 * 109.47060 * 60.00764 * 26 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 1.5299 2.1638 -1.2492 5 8 2.0062 1.4902 -2.4161 6 6 1.5849 2.0868 -3.6443 7 7 1.5516 2.1332 1.1962 8 6 1.8773 1.6727 2.4203 9 8 2.5732 0.6798 2.5319 10 6 1.3894 2.3618 3.6143 11 16 0.3796 3.7993 3.6132 12 6 0.3377 3.8494 5.3667 13 6 1.0366 2.8524 5.8959 14 6 1.6493 1.9749 4.9296 15 6 2.4255 0.8552 5.2745 16 1 3.1532 0.4671 4.5772 17 6 2.2549 0.2415 6.5246 18 7 1.2525 0.5841 7.2892 19 14 3.4613 -1.0652 7.0959 20 1 4.8257 -0.4829 7.1653 21 1 3.0629 -1.5527 8.4409 22 1 3.4549 -2.1984 6.1362 23 6 3.5469 1.4426 -0.0006 24 8 4.1509 0.4943 -0.4432 25 8 4.2182 2.4962 0.4905 26 6 5.6682 2.4270 0.4583 27 1 -0.3634 0.5138 0.8900 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5137 -0.8900 31 1 1.8933 -0.5138 0.8900 32 1 0.4399 2.1638 -1.2492 33 1 1.8935 3.1914 -1.2494 34 1 0.4960 2.0855 -3.6941 35 1 1.9497 3.1128 -3.6938 36 1 1.9873 1.5169 -4.4818 37 1 0.9939 2.9218 1.1072 38 1 -0.1888 4.5965 5.9421 39 1 1.1339 2.7076 6.9617 40 1 1.1344 0.1596 8.1533 41 1 6.0850 3.3397 0.8843 42 1 6.0041 1.5687 1.0400 43 1 6.0041 2.3208 -0.5733 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000875782274.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:17 Heat of formation + Delta-G solvation = -160.922779 kcal Electronic energy + Delta-G solvation = -29007.302901 eV Core-core repulsion = 24950.730527 eV Total energy + Delta-G solvation = -4056.572374 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -42.09907 -40.20322 -39.11673 -37.92607 -37.54834 -36.40244 -34.90099 -33.30110 -30.97036 -30.37823 -28.75168 -28.08984 -26.99520 -25.95642 -24.12447 -23.39423 -22.26077 -20.64805 -20.55532 -19.54972 -18.89536 -18.09785 -17.69564 -17.46809 -17.21919 -17.11253 -16.73559 -16.40768 -15.88471 -15.68345 -15.42126 -15.14381 -14.81427 -14.48221 -14.28063 -14.20470 -13.95516 -13.73541 -13.47693 -13.20542 -13.13051 -13.04631 -12.93497 -12.78083 -12.72269 -12.50297 -12.13827 -12.07794 -12.01805 -11.98725 -11.82117 -11.52323 -11.40474 -11.04872 -10.70677 -10.32687 -10.10861 -9.34001 -8.90193 -8.85222 -6.43623 0.32579 1.10793 1.32162 1.34548 1.40095 1.42863 1.64388 1.79900 1.98562 2.03817 2.15595 2.55572 2.99954 3.31338 3.53793 3.57689 3.78826 4.20166 4.22297 4.23577 4.24549 4.36269 4.40311 4.45147 4.53686 4.57056 4.59350 4.75629 4.86687 4.88694 5.00619 5.03738 5.17783 5.29984 5.32892 5.35221 5.41360 5.48863 5.61449 5.84702 6.06110 6.40007 6.57154 6.68641 6.72161 6.92209 7.69867 8.07123 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012527 B = 0.004267 C = 0.003797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.593879 B = 6560.352319 C = 7372.979250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.117 4.117 3 C 0.201 3.799 4 C 0.067 3.933 5 O -0.405 6.405 6 C 0.025 3.975 7 N -0.714 5.714 8 C 0.605 3.395 9 O -0.591 6.591 10 C -0.460 4.460 11 S 0.019 5.981 12 C -0.190 4.190 13 C -0.130 4.130 14 C 0.116 3.884 15 C -0.416 4.416 16 H 0.081 0.919 17 C 0.040 3.960 18 N -0.790 5.790 19 Si 0.982 3.018 20 H -0.258 1.258 21 H -0.249 1.249 22 H -0.274 1.274 23 C 0.470 3.530 24 O -0.530 6.530 25 O -0.362 6.362 26 C 0.031 3.969 27 H 0.045 0.955 28 H 0.083 0.917 29 H 0.065 0.935 30 H 0.080 0.920 31 H 0.049 0.951 32 H 0.105 0.895 33 H 0.079 0.921 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.097 0.903 37 H 0.407 0.593 38 H 0.176 0.824 39 H 0.139 0.861 40 H 0.300 0.700 41 H 0.130 0.870 42 H 0.042 0.958 43 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.416 6.883 -12.094 14.123 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.156 4.156 3 C 0.112 3.888 4 C -0.010 4.010 5 O -0.323 6.323 6 C -0.071 4.071 7 N -0.370 5.370 8 C 0.403 3.597 9 O -0.476 6.476 10 C -0.578 4.578 11 S 0.275 5.725 12 C -0.324 4.324 13 C -0.163 4.163 14 C 0.104 3.896 15 C -0.446 4.446 16 H 0.099 0.901 17 C -0.181 4.181 18 N -0.415 5.415 19 Si 0.802 3.198 20 H -0.183 1.183 21 H -0.172 1.172 22 H -0.199 1.199 23 C 0.312 3.688 24 O -0.418 6.418 25 O -0.278 6.278 26 C -0.062 4.062 27 H 0.064 0.936 28 H 0.101 0.899 29 H 0.084 0.916 30 H 0.099 0.901 31 H 0.067 0.933 32 H 0.123 0.877 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.072 0.928 36 H 0.115 0.885 37 H 0.244 0.756 38 H 0.193 0.807 39 H 0.157 0.843 40 H 0.112 0.888 41 H 0.148 0.852 42 H 0.061 0.939 43 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -2.345 6.623 -13.049 14.821 hybrid contribution 1.125 -1.135 1.575 2.244 sum -1.220 5.488 -11.475 12.778 Atomic orbital electron populations 1.21687 0.92480 1.02750 1.02325 1.21687 0.98250 0.92910 1.02731 1.20010 0.84801 0.96234 0.87762 1.22610 1.00787 0.95045 0.82595 1.87935 1.75407 1.54584 1.14411 1.23032 1.00657 0.98792 0.84620 1.45425 1.55893 1.32678 1.03040 1.16889 0.78488 0.82442 0.81916 1.90655 1.42003 1.28496 1.86407 1.22898 1.27928 1.12018 0.95006 1.82236 1.56366 1.29877 1.04055 1.25449 1.05967 1.03552 0.97454 1.21584 0.99708 0.94191 1.00802 1.18329 0.89242 0.92305 0.89691 1.19944 1.16122 1.09024 0.99559 0.90130 1.26926 0.96664 0.99506 0.94997 1.69637 1.24944 1.36498 1.10389 0.85248 0.78786 0.77443 0.78312 1.18266 1.17203 1.19888 1.24310 0.92405 0.79682 0.72383 1.90558 1.70667 1.35818 1.44715 1.86517 1.23312 1.43113 1.74860 1.23454 0.75509 1.04348 1.02910 0.93578 0.89869 0.91639 0.90105 0.93271 0.87708 0.90322 0.91749 0.92781 0.88458 0.75577 0.80660 0.84334 0.88808 0.85229 0.93880 0.90895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.93 9.40 71.98 0.68 -3.25 16 2 C -0.12 -4.31 4.17 30.60 0.13 -4.18 16 3 C 0.20 7.02 0.55 2.86 0.00 7.02 16 4 C 0.07 1.64 4.55 71.98 0.33 1.96 16 5 O -0.40 -10.33 9.65 -148.98 -1.44 -11.77 16 6 C 0.02 0.38 11.01 113.37 1.25 1.63 16 7 N -0.71 -26.66 4.10 -430.63 -1.77 -28.43 16 8 C 0.61 29.25 7.09 86.32 0.61 29.87 16 9 O -0.59 -33.16 11.65 -4.55 -0.05 -33.21 16 10 C -0.46 -22.68 6.51 24.66 0.16 -22.52 16 11 S 0.02 0.73 22.25 -56.49 -1.26 -0.52 16 12 C -0.19 -7.58 11.07 66.64 0.74 -6.84 16 13 C -0.13 -6.18 9.04 22.60 0.20 -5.97 16 14 C 0.12 6.18 5.67 -20.89 -0.12 6.06 16 15 C -0.42 -23.21 8.52 23.33 0.20 -23.01 16 16 H 0.08 4.87 6.03 -2.91 -0.02 4.86 16 17 C 0.04 1.95 5.39 85.37 0.46 2.42 16 18 N -0.79 -38.06 10.82 21.89 0.24 -37.83 16 19 Si 0.98 39.07 29.57 68.60 2.03 41.10 16 20 H -0.26 -10.13 7.11 99.48 0.71 -9.42 16 21 H -0.25 -8.72 7.11 99.48 0.71 -8.01 16 22 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 23 C 0.47 19.18 5.08 71.24 0.36 19.54 16 24 O -0.53 -23.99 15.84 21.95 0.35 -23.64 16 25 O -0.36 -13.93 10.17 -51.43 -0.52 -14.45 16 26 C 0.03 0.95 10.56 113.37 1.20 2.15 16 27 H 0.05 1.48 7.60 -2.39 -0.02 1.47 16 28 H 0.08 1.83 6.43 -2.39 -0.02 1.82 16 29 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 30 H 0.08 2.94 7.41 -2.39 -0.02 2.92 16 31 H 0.05 2.27 6.15 -2.39 -0.01 2.25 16 32 H 0.11 1.95 6.43 -2.39 -0.02 1.94 16 33 H 0.08 1.68 8.14 -2.38 -0.02 1.66 16 34 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.05 0.70 8.14 -2.39 -0.02 0.68 16 36 H 0.10 1.31 8.14 -2.39 -0.02 1.29 16 37 H 0.41 12.88 7.55 -92.71 -0.70 12.18 16 38 H 0.18 5.54 8.06 -2.91 -0.02 5.51 16 39 H 0.14 6.62 6.40 -2.91 -0.02 6.60 16 40 H 0.30 12.79 8.29 -92.71 -0.77 12.03 16 41 H 0.13 3.02 8.14 -2.38 -0.02 3.00 16 42 H 0.04 1.47 8.13 -2.39 -0.02 1.45 16 43 H 0.07 1.97 8.13 -2.39 -0.02 1.95 16 Total: -1.00 -72.14 369.47 4.13 -68.02 By element: Atomic # 1 Polarization: 35.50 SS G_CDS: 0.36 Total: 35.86 kcal Atomic # 6 Polarization: -1.32 SS G_CDS: 6.19 Total: 4.88 kcal Atomic # 7 Polarization: -64.72 SS G_CDS: -1.53 Total: -66.25 kcal Atomic # 8 Polarization: -81.40 SS G_CDS: -1.67 Total: -83.07 kcal Atomic # 14 Polarization: 39.07 SS G_CDS: 2.03 Total: 41.10 kcal Atomic # 16 Polarization: 0.73 SS G_CDS: -1.26 Total: -0.52 kcal Total: -72.14 4.13 -68.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000875782274.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.907 kcal (2) G-P(sol) polarization free energy of solvation -72.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -160.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds