Wall clock time and date at job start Sat Apr 11 2020 06:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47051 * 2 1 4 4 N 1.46506 * 109.46824 * 180.02562 * 3 2 1 5 5 C 1.46499 * 119.99936 * 85.00335 * 4 3 2 6 6 C 1.50704 * 109.46882 * 84.99554 * 5 4 3 7 7 O 1.20822 * 120.00452 * 0.02562 * 6 5 4 8 8 O 1.34231 * 119.99585 * 179.97438 * 6 5 4 9 9 S 1.65597 * 120.00079 * 264.72374 * 4 3 2 10 10 O 1.42095 * 106.40469 * 203.54076 * 9 4 3 11 11 O 1.42098 * 106.40441 * 336.46418 * 9 4 3 12 12 C 1.76207 * 107.21624 * 90.00391 * 9 4 3 13 13 C 1.38238 * 119.99673 * 269.72920 * 12 9 4 14 14 C 1.38231 * 119.99694 * 179.76874 * 13 12 9 15 15 C 1.38237 * 120.00023 * 0.50296 * 14 13 12 16 16 C 1.50703 * 120.00079 * 179.72591 * 15 14 13 17 17 C 1.50697 * 109.47112 * 270.01993 * 16 15 14 18 18 H 1.07999 * 119.99838 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99840 * 179.97438 * 17 16 15 20 20 N 1.31509 * 119.99882 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99807 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47323 * 89.99987 * 21 19 17 23 23 H 1.48495 * 109.47169 * 209.99941 * 21 19 17 24 24 H 1.48498 * 109.47199 * 329.99801 * 21 19 17 25 25 C 1.38232 * 120.00056 * 359.74738 * 15 14 13 26 26 C 1.38224 * 119.99967 * 90.00006 * 12 9 4 27 27 H 1.08999 * 109.46714 * 299.99418 * 1 2 3 28 28 H 1.08999 * 109.46872 * 59.99661 * 1 2 3 29 29 H 1.09002 * 109.46739 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46645 * 240.00074 * 2 1 3 31 31 H 1.09002 * 109.47370 * 120.00340 * 2 1 3 32 32 H 1.08999 * 109.46886 * 60.00687 * 3 2 1 33 33 H 1.08999 * 109.47559 * 299.99918 * 3 2 1 34 34 H 1.08991 * 109.47463 * 204.99792 * 5 4 3 35 35 H 1.09000 * 109.46878 * 325.00020 * 5 4 3 36 36 H 0.96701 * 117.00118 * 180.02562 * 8 6 5 37 37 H 1.07998 * 120.00071 * 359.97438 * 13 12 9 38 38 H 1.08002 * 120.00049 * 180.22469 * 14 13 12 39 39 H 1.09002 * 109.46915 * 30.02122 * 16 15 14 40 40 H 1.09004 * 109.46770 * 150.02118 * 16 15 14 41 41 H 0.97004 * 120.00260 * 180.02562 * 20 19 17 42 42 H 1.08002 * 120.00465 * 179.97438 * 25 15 14 43 43 H 1.08006 * 120.00306 * 359.97438 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.2370 1.3321 -1.2648 6 6 4.3806 2.6989 -1.8831 7 8 3.9194 3.6661 -1.3247 8 8 5.0219 2.8421 -3.0536 9 16 4.3337 1.5740 1.4271 10 8 5.6165 2.0907 1.1004 11 8 3.4525 2.2054 2.3458 12 6 4.5948 -0.0605 2.0312 13 6 3.6633 -0.6446 2.8692 14 6 3.8658 -1.9287 3.3393 15 6 5.0047 -2.6248 2.9797 16 6 5.2284 -4.0224 3.4972 17 6 5.9819 -3.9608 4.8008 18 1 6.2696 -3.0051 5.2135 19 6 6.3031 -5.1244 5.4671 20 7 5.9523 -6.2880 4.9647 21 14 7.2365 -5.0480 7.0834 22 1 6.2714 -4.9632 8.2088 23 1 8.0663 -6.2701 7.2340 24 1 8.1137 -3.8498 7.0922 25 6 5.9386 -2.0388 2.1460 26 6 5.7336 -0.7565 1.6717 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6768 1.9562 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 5.2253 0.9126 -1.0771 35 1 3.6893 0.6809 -1.9461 36 1 5.0892 3.7382 -3.4106 37 1 2.7759 -0.0990 3.1539 38 1 3.1363 -2.3864 3.9910 39 1 4.2662 -4.5093 3.6563 40 1 5.8074 -4.5909 2.7694 41 1 6.1778 -7.1067 5.4336 42 1 6.8286 -2.5824 1.8654 43 1 6.4632 -0.2987 1.0201 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887329531.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:36 Heat of formation + Delta-G solvation = -150.771572 kcal Electronic energy + Delta-G solvation = -27897.846719 eV Core-core repulsion = 23841.714534 eV Total energy + Delta-G solvation = -4056.132185 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.51716 -38.86708 -37.45538 -37.23467 -36.18469 -35.83056 -33.71949 -33.28383 -31.60057 -30.63451 -28.88912 -27.47454 -25.64846 -23.76200 -22.42852 -22.31312 -21.66793 -20.85984 -19.04792 -18.47114 -18.13134 -17.44942 -16.89788 -16.47913 -16.41018 -15.88940 -15.20588 -15.15130 -14.91961 -14.40484 -14.37643 -14.10263 -13.74386 -13.43230 -13.22382 -13.11481 -12.88560 -12.65288 -12.32521 -12.25355 -12.05231 -11.89028 -11.85184 -11.77107 -11.74341 -11.55950 -11.52158 -11.04330 -10.99309 -10.94212 -10.84515 -10.55147 -10.51875 -9.79576 -9.70717 -9.47089 -8.63937 -8.56398 -8.42937 -6.19679 -4.24800 0.29881 1.26419 1.73950 1.91506 2.56754 2.91166 3.22876 3.29607 3.33891 3.75119 4.01963 4.21279 4.31468 4.36423 4.70587 4.72812 4.86157 4.90873 5.00097 5.09400 5.14633 5.17660 5.19932 5.43136 5.49712 5.59498 5.67407 5.71246 5.83685 5.86305 5.95519 6.04746 6.18560 6.19331 6.20860 6.27322 6.46802 6.78688 6.86336 7.25209 7.38555 7.55086 7.59290 7.75393 8.10265 8.80027 9.40432 10.90313 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017397 B = 0.002889 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.071007 B = 9688.608547 C =10202.767279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.151 4.151 3 C 0.115 3.885 4 N -0.984 5.984 5 C 0.135 3.865 6 C 0.461 3.539 7 O -0.505 6.505 8 O -0.516 6.516 9 S 2.693 3.307 10 O -0.960 6.960 11 O -0.954 6.954 12 C -0.703 4.703 13 C -0.022 4.022 14 C -0.144 4.144 15 C 0.028 3.972 16 C 0.039 3.961 17 C -0.518 4.518 18 H 0.059 0.941 19 C 0.061 3.939 20 N -0.891 5.891 21 Si 0.899 3.101 22 H -0.278 1.278 23 H -0.285 1.285 24 H -0.272 1.272 25 C -0.144 4.144 26 C -0.024 4.024 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.060 0.940 30 H 0.069 0.931 31 H 0.072 0.928 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.128 0.872 35 H 0.127 0.873 36 H 0.411 0.589 37 H 0.130 0.870 38 H 0.129 0.871 39 H 0.035 0.965 40 H 0.035 0.965 41 H 0.264 0.736 42 H 0.130 0.870 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.702 13.257 -16.423 22.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.190 4.190 3 C -0.010 4.010 4 N -0.819 5.819 5 C 0.007 3.993 6 C 0.300 3.700 7 O -0.392 6.392 8 O -0.328 6.328 9 S 2.788 3.212 10 O -0.950 6.950 11 O -0.944 6.944 12 C -0.793 4.793 13 C -0.041 4.041 14 C -0.163 4.163 15 C 0.028 3.972 16 C 0.003 3.997 17 C -0.556 4.556 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.529 5.529 21 Si 0.726 3.274 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.163 4.163 26 C -0.044 4.044 27 H 0.078 0.922 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.088 0.912 31 H 0.091 0.909 32 H 0.117 0.883 33 H 0.100 0.900 34 H 0.145 0.855 35 H 0.145 0.855 36 H 0.270 0.730 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.074 0.926 42 H 0.147 0.853 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.599 13.749 -15.706 22.214 hybrid contribution 0.577 -0.236 0.684 0.926 sum -7.021 13.513 -15.022 21.391 Atomic orbital electron populations 1.21696 0.94833 1.02265 1.02043 1.22066 0.96627 0.96805 1.03523 1.21569 0.77106 0.97341 1.04938 1.57492 1.15637 1.89040 1.19708 1.20616 1.00460 0.91177 0.87073 1.24186 0.74082 0.93136 0.78565 1.90733 1.45381 1.41373 1.61687 1.84509 1.71529 1.39310 1.37449 1.01867 0.72902 0.74295 0.72168 1.93554 1.40047 1.77878 1.83516 1.93545 1.66179 1.73677 1.60995 1.30306 1.06041 1.25158 1.17804 1.20756 0.96343 0.94650 0.92366 1.21249 0.99072 0.94417 1.01527 1.21132 0.90316 0.98271 0.87494 1.18543 0.98492 0.86147 0.96558 1.20968 1.36558 0.92972 1.05147 0.92277 1.24998 0.95788 0.95273 0.98038 1.69942 1.46315 0.97502 1.39186 0.86479 0.79882 0.77716 0.83343 1.20434 1.21020 1.19678 1.21247 1.00251 0.95064 0.99704 1.20760 0.93715 0.93965 0.95951 0.92248 0.92670 0.92141 0.91221 0.90916 0.88329 0.89995 0.85471 0.85537 0.72989 0.85254 0.85279 0.94696 0.94684 0.92606 0.85255 0.85316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.91 37.16 0.37 -0.70 16 2 C -0.15 -1.23 6.26 -26.73 -0.17 -1.40 16 3 C 0.12 1.06 5.67 -4.04 -0.02 1.03 16 4 N -0.98 -10.56 2.27 -115.66 -0.26 -10.82 16 5 C 0.13 1.11 5.93 -5.19 -0.03 1.08 16 6 C 0.46 4.56 8.39 36.01 0.30 4.86 16 7 O -0.50 -6.82 17.18 -18.75 -0.32 -7.14 16 8 O -0.52 -3.64 13.42 -39.26 -0.53 -4.17 16 9 S 2.69 39.09 5.65 -107.50 -0.61 38.48 16 10 O -0.96 -15.86 16.25 -57.17 -0.93 -16.79 16 11 O -0.95 -16.02 15.83 -57.17 -0.90 -16.92 16 12 C -0.70 -10.70 5.97 -39.59 -0.24 -10.94 16 13 C -0.02 -0.34 8.47 -39.58 -0.34 -0.67 16 14 C -0.14 -2.56 9.70 -39.58 -0.38 -2.94 16 15 C 0.03 0.56 5.07 -104.62 -0.53 0.03 16 16 C 0.04 0.94 5.10 -29.04 -0.15 0.79 16 17 C -0.52 -13.84 9.09 -34.44 -0.31 -14.15 16 18 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -25.19 13.29 55.43 0.74 -24.45 16 21 Si 0.90 20.91 29.54 -169.99 -5.02 15.89 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 25 C -0.14 -2.54 9.70 -39.58 -0.38 -2.93 16 26 C -0.02 -0.38 9.52 -39.58 -0.38 -0.75 16 27 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.05 0.33 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 31 H 0.07 0.69 7.06 -51.93 -0.37 0.32 16 32 H 0.10 1.00 6.91 -51.93 -0.36 0.64 16 33 H 0.08 0.64 8.11 -51.93 -0.42 0.21 16 34 H 0.13 0.91 7.61 -51.93 -0.40 0.51 16 35 H 0.13 0.59 8.11 -51.93 -0.42 0.17 16 36 H 0.41 1.33 9.10 45.56 0.41 1.74 16 37 H 0.13 1.75 7.61 -52.49 -0.40 1.35 16 38 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16 39 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 40 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 41 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 42 H 0.13 2.17 8.06 -52.49 -0.42 1.74 16 43 H 0.13 1.65 7.62 -52.48 -0.40 1.25 16 LS Contribution 382.05 15.07 5.76 5.76 Total: -1.00 -35.12 382.05 -9.70 -44.82 By element: Atomic # 1 Polarization: 5.72 SS G_CDS: -5.26 Total: 0.46 kcal Atomic # 6 Polarization: -22.76 SS G_CDS: -2.36 Total: -25.12 kcal Atomic # 7 Polarization: -35.75 SS G_CDS: 0.47 Total: -35.27 kcal Atomic # 8 Polarization: -42.33 SS G_CDS: -2.68 Total: -45.02 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -5.02 Total: 15.89 kcal Atomic # 16 Polarization: 39.09 SS G_CDS: -0.61 Total: 38.48 kcal Total LS contribution 5.76 Total: 5.76 kcal Total: -35.12 -9.70 -44.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887329531.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.948 kcal (2) G-P(sol) polarization free energy of solvation -35.121 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.702 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds