Wall clock time and date at job start Sat Apr 11 2020 06:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52995 * 109.47051 * 2 1 4 4 N 1.46506 * 109.46824 * 180.02562 * 3 2 1 5 5 C 1.46499 * 119.99936 * 85.00335 * 4 3 2 6 6 C 1.50704 * 109.46882 * 84.99554 * 5 4 3 7 7 O 1.20822 * 120.00452 * 0.02562 * 6 5 4 8 8 O 1.34231 * 119.99585 * 179.97438 * 6 5 4 9 9 S 1.65597 * 120.00079 * 264.72374 * 4 3 2 10 10 O 1.42095 * 106.40469 * 203.54076 * 9 4 3 11 11 O 1.42098 * 106.40441 * 336.46418 * 9 4 3 12 12 C 1.76207 * 107.21624 * 90.00391 * 9 4 3 13 13 C 1.38238 * 119.99673 * 269.72920 * 12 9 4 14 14 C 1.38231 * 119.99694 * 179.76874 * 13 12 9 15 15 C 1.38237 * 120.00023 * 0.50296 * 14 13 12 16 16 C 1.50703 * 120.00079 * 179.72591 * 15 14 13 17 17 C 1.50697 * 109.47112 * 270.01993 * 16 15 14 18 18 H 1.07999 * 119.99838 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99840 * 179.97438 * 17 16 15 20 20 N 1.31509 * 119.99882 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99807 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47323 * 89.99987 * 21 19 17 23 23 H 1.48495 * 109.47169 * 209.99941 * 21 19 17 24 24 H 1.48498 * 109.47199 * 329.99801 * 21 19 17 25 25 C 1.38232 * 120.00056 * 359.74738 * 15 14 13 26 26 C 1.38224 * 119.99967 * 90.00006 * 12 9 4 27 27 H 1.08999 * 109.46714 * 299.99418 * 1 2 3 28 28 H 1.08999 * 109.46872 * 59.99661 * 1 2 3 29 29 H 1.09002 * 109.46739 * 180.02562 * 1 2 3 30 30 H 1.09003 * 109.46645 * 240.00074 * 2 1 3 31 31 H 1.09002 * 109.47370 * 120.00340 * 2 1 3 32 32 H 1.08999 * 109.46886 * 60.00687 * 3 2 1 33 33 H 1.08999 * 109.47559 * 299.99918 * 3 2 1 34 34 H 1.08991 * 109.47463 * 204.99792 * 5 4 3 35 35 H 1.09000 * 109.46878 * 325.00020 * 5 4 3 36 36 H 0.96701 * 117.00118 * 180.02562 * 8 6 5 37 37 H 1.07998 * 120.00071 * 359.97438 * 13 12 9 38 38 H 1.08002 * 120.00049 * 180.22469 * 14 13 12 39 39 H 1.09002 * 109.46915 * 30.02122 * 16 15 14 40 40 H 1.09004 * 109.46770 * 150.02118 * 16 15 14 41 41 H 0.97004 * 120.00260 * 180.02562 * 20 19 17 42 42 H 1.08002 * 120.00465 * 179.97438 * 25 15 14 43 43 H 1.08006 * 120.00306 * 359.97438 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.5051 1.4424 -0.0006 5 6 4.2370 1.3321 -1.2648 6 6 4.3806 2.6989 -1.8831 7 8 3.9194 3.6661 -1.3247 8 8 5.0219 2.8421 -3.0536 9 16 4.3337 1.5740 1.4271 10 8 5.6165 2.0907 1.1004 11 8 3.4525 2.2054 2.3458 12 6 4.5948 -0.0605 2.0312 13 6 3.6633 -0.6446 2.8692 14 6 3.8658 -1.9287 3.3393 15 6 5.0047 -2.6248 2.9797 16 6 5.2284 -4.0224 3.4972 17 6 5.9819 -3.9608 4.8008 18 1 6.2696 -3.0051 5.2135 19 6 6.3031 -5.1244 5.4671 20 7 5.9523 -6.2880 4.9647 21 14 7.2365 -5.0480 7.0834 22 1 6.2714 -4.9632 8.2088 23 1 8.0663 -6.2701 7.2340 24 1 8.1137 -3.8498 7.0922 25 6 5.9386 -2.0388 2.1460 26 6 5.7336 -0.7565 1.6717 27 1 -0.3633 0.5137 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6768 1.9562 0.8900 33 1 1.6767 1.9563 -0.8900 34 1 5.2253 0.9126 -1.0771 35 1 3.6893 0.6809 -1.9461 36 1 5.0892 3.7382 -3.4106 37 1 2.7759 -0.0990 3.1539 38 1 3.1363 -2.3864 3.9910 39 1 4.2662 -4.5093 3.6563 40 1 5.8074 -4.5909 2.7694 41 1 6.1778 -7.1067 5.4336 42 1 6.8286 -2.5824 1.8654 43 1 6.4632 -0.2987 1.0201 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887329531.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:36 Heat of formation + Delta-G solvation = -174.400658 kcal Electronic energy + Delta-G solvation = -27898.871353 eV Core-core repulsion = 23841.714534 eV Total energy + Delta-G solvation = -4057.156819 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.24260 -40.24327 -38.55898 -38.06789 -37.06339 -36.91035 -35.59118 -33.95357 -33.31735 -31.95959 -29.57006 -29.24500 -26.37493 -25.57846 -23.73660 -23.00368 -22.58419 -22.19553 -20.08769 -19.21626 -19.16312 -18.61244 -18.46249 -17.72853 -17.24924 -16.83218 -16.71754 -16.31261 -15.99951 -15.68840 -15.49622 -15.30258 -14.65427 -14.61270 -14.45336 -14.14339 -13.98040 -13.82521 -13.54932 -13.40665 -13.39679 -13.26667 -13.11250 -12.72725 -12.70380 -12.66655 -12.59463 -12.47835 -12.27126 -12.12686 -12.03306 -11.79360 -11.67883 -11.48182 -11.42097 -10.64451 -10.32299 -9.95531 -9.92898 -8.26438 -6.38754 -0.82737 -0.08167 0.40628 1.20660 1.38806 1.39524 1.50532 1.71678 2.15267 2.35265 2.57926 2.76985 3.06530 3.12079 3.55684 3.85039 3.96678 4.05054 4.10482 4.16886 4.26576 4.35967 4.41710 4.45001 4.49150 4.54027 4.78317 4.81302 4.86423 4.91758 4.99824 5.09819 5.24117 5.27274 5.28140 5.32420 5.34127 5.38644 5.54251 5.64234 5.68309 5.87815 5.92534 6.10917 6.73266 6.99627 7.30364 8.83514 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017397 B = 0.002889 C = 0.002744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1609.071007 B = 9688.608547 C =10202.767279 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.149 4.149 3 C 0.113 3.887 4 N -0.978 5.978 5 C 0.122 3.878 6 C 0.464 3.536 7 O -0.549 6.549 8 O -0.508 6.508 9 S 2.710 3.290 10 O -0.979 6.979 11 O -0.979 6.979 12 C -0.696 4.696 13 C -0.016 4.016 14 C -0.151 4.151 15 C 0.000 4.000 16 C 0.048 3.952 17 C -0.534 4.534 18 H 0.053 0.947 19 C 0.011 3.989 20 N -0.924 5.924 21 Si 0.962 3.038 22 H -0.272 1.272 23 H -0.278 1.278 24 H -0.268 1.268 25 C -0.151 4.151 26 C -0.017 4.017 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.086 0.914 31 H 0.056 0.944 32 H 0.085 0.915 33 H 0.101 0.899 34 H 0.142 0.858 35 H 0.170 0.830 36 H 0.428 0.572 37 H 0.151 0.849 38 H 0.129 0.871 39 H 0.014 0.986 40 H 0.015 0.985 41 H 0.267 0.733 42 H 0.133 0.867 43 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.680 14.474 -17.789 24.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.188 4.188 3 C -0.011 4.011 4 N -0.815 5.815 5 C -0.005 4.005 6 C 0.305 3.695 7 O -0.439 6.439 8 O -0.321 6.321 9 S 2.803 3.197 10 O -0.969 6.969 11 O -0.970 6.970 12 C -0.784 4.784 13 C -0.036 4.036 14 C -0.170 4.170 15 C 0.000 4.000 16 C 0.011 3.989 17 C -0.572 4.572 18 H 0.071 0.929 19 C -0.188 4.188 20 N -0.564 5.564 21 Si 0.786 3.214 22 H -0.198 1.198 23 H -0.203 1.203 24 H -0.193 1.193 25 C -0.170 4.170 26 C -0.036 4.036 27 H 0.073 0.927 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.105 0.895 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.119 0.881 34 H 0.159 0.841 35 H 0.187 0.813 36 H 0.290 0.710 37 H 0.168 0.832 38 H 0.147 0.853 39 H 0.032 0.968 40 H 0.034 0.966 41 H 0.076 0.924 42 H 0.151 0.849 43 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -7.561 14.959 -17.088 23.936 hybrid contribution 0.531 -0.512 0.942 1.196 sum -7.030 14.447 -16.146 22.778 Atomic orbital electron populations 1.21704 0.94135 1.02460 1.02568 1.22058 0.97236 0.95950 1.03579 1.21722 0.75998 0.98156 1.05274 1.57179 1.16192 1.88728 1.19384 1.21101 1.01698 0.91182 0.86486 1.24458 0.73199 0.93125 0.78708 1.90729 1.47429 1.42796 1.62954 1.84473 1.70497 1.40837 1.36251 1.01254 0.72366 0.73508 0.72568 1.93525 1.41406 1.78030 1.83980 1.93512 1.66636 1.74048 1.62762 1.30613 1.05552 1.25396 1.16852 1.20941 0.97141 0.93745 0.91741 1.21270 0.98568 0.95312 1.01885 1.20822 0.92457 0.96794 0.89963 1.18264 0.96593 0.88641 0.95358 1.21299 1.36690 0.92767 1.06417 0.92852 1.25826 0.96655 0.94943 1.01380 1.70045 1.47503 0.98126 1.40701 0.85495 0.78696 0.77869 0.79324 1.19781 1.20349 1.19269 1.21312 0.99959 0.96139 0.99578 1.21034 0.94153 0.92847 0.95532 0.92694 0.91265 0.92102 0.89542 0.92489 0.89653 0.88067 0.84066 0.81318 0.71036 0.83184 0.85276 0.96809 0.96622 0.92389 0.84920 0.82279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.84 9.91 71.98 0.71 -1.13 16 2 C -0.15 -2.08 6.26 30.59 0.19 -1.89 16 3 C 0.11 1.81 5.67 86.38 0.49 2.30 16 4 N -0.98 -18.54 2.27 -519.85 -1.18 -19.72 16 5 C 0.12 1.60 5.93 85.63 0.51 2.10 16 6 C 0.46 7.95 8.39 71.24 0.60 8.54 16 7 O -0.55 -13.91 17.18 21.98 0.38 -13.54 16 8 O -0.51 -5.65 13.42 -51.42 -0.69 -6.34 16 9 S 2.71 73.78 5.65 -56.49 -0.32 73.46 16 10 O -0.98 -30.44 16.25 -128.00 -2.08 -32.52 16 11 O -0.98 -31.81 15.83 -128.00 -2.03 -33.84 16 12 C -0.70 -19.98 5.97 22.27 0.13 -19.85 16 13 C -0.02 -0.50 8.47 22.27 0.19 -0.31 16 14 C -0.15 -5.42 9.70 22.27 0.22 -5.20 16 15 C 0.00 0.00 5.07 -19.87 -0.10 -0.10 16 16 C 0.05 2.40 5.10 29.10 0.15 2.55 16 17 C -0.53 -29.21 9.09 25.60 0.23 -28.98 16 18 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 19 C 0.01 0.61 5.46 84.66 0.46 1.07 16 20 N -0.92 -53.39 13.29 21.45 0.28 -53.11 16 21 Si 0.96 43.15 29.54 68.60 2.03 45.18 16 22 H -0.27 -11.88 7.11 99.48 0.71 -11.18 16 23 H -0.28 -12.11 7.11 99.48 0.71 -11.41 16 24 H -0.27 -11.76 7.11 99.48 0.71 -11.06 16 25 C -0.15 -5.28 9.70 22.27 0.22 -5.07 16 26 C -0.02 -0.48 9.52 22.27 0.21 -0.27 16 27 H 0.05 0.71 8.14 -2.39 -0.02 0.69 16 28 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.09 0.92 8.14 -2.39 -0.02 0.90 16 31 H 0.06 0.98 7.06 -2.39 -0.02 0.97 16 32 H 0.09 1.62 6.91 -2.39 -0.02 1.61 16 33 H 0.10 1.27 8.11 -2.39 -0.02 1.25 16 34 H 0.14 1.50 7.61 -2.39 -0.02 1.48 16 35 H 0.17 0.78 8.11 -2.39 -0.02 0.76 16 36 H 0.43 1.66 9.10 -74.06 -0.67 0.98 16 37 H 0.15 3.87 7.61 -2.91 -0.02 3.85 16 38 H 0.13 4.49 8.06 -2.91 -0.02 4.46 16 39 H 0.01 0.72 8.09 -2.39 -0.02 0.70 16 40 H 0.02 0.81 8.09 -2.39 -0.02 0.79 16 41 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 42 H 0.13 4.44 8.06 -2.91 -0.02 4.42 16 43 H 0.16 3.60 7.62 -2.91 -0.02 3.58 16 Total: -1.00 -76.83 382.05 0.96 -75.87 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: 0.36 Total: 10.77 kcal Atomic # 6 Polarization: -50.43 SS G_CDS: 4.21 Total: -46.22 kcal Atomic # 7 Polarization: -71.93 SS G_CDS: -0.90 Total: -72.83 kcal Atomic # 8 Polarization: -81.82 SS G_CDS: -4.42 Total: -86.23 kcal Atomic # 14 Polarization: 43.15 SS G_CDS: 2.03 Total: 45.18 kcal Atomic # 16 Polarization: 73.78 SS G_CDS: -0.32 Total: 73.46 kcal Total: -76.83 0.96 -75.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887329531.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.527 kcal (2) G-P(sol) polarization free energy of solvation -76.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -174.401 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds