Wall clock time and date at job start Sat Apr 11 2020 06:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 N 1.46506 * 109.47289 * 119.99947 * 2 1 3 5 5 C 1.46499 * 119.99936 * 299.99999 * 4 2 1 6 6 C 1.50704 * 109.46882 * 84.99554 * 5 4 2 7 7 O 1.20822 * 120.00452 * 0.02562 * 6 5 4 8 8 O 1.34231 * 119.99585 * 179.97438 * 6 5 4 9 9 S 1.65597 * 120.00079 * 119.72038 * 4 2 1 10 10 O 1.42095 * 106.40469 * 203.54076 * 9 4 2 11 11 O 1.42098 * 106.40441 * 336.46418 * 9 4 2 12 12 C 1.76207 * 107.21624 * 90.00391 * 9 4 2 13 13 C 1.38238 * 119.99673 * 269.72920 * 12 9 4 14 14 C 1.38231 * 119.99694 * 179.76874 * 13 12 9 15 15 C 1.38237 * 120.00023 * 0.50296 * 14 13 12 16 16 C 1.50703 * 120.00079 * 179.72591 * 15 14 13 17 17 C 1.50697 * 109.47112 * 270.01993 * 16 15 14 18 18 H 1.07999 * 119.99838 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99840 * 179.97438 * 17 16 15 20 20 N 1.31509 * 119.99882 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99807 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47323 * 89.99987 * 21 19 17 23 23 H 1.48495 * 109.47169 * 209.99941 * 21 19 17 24 24 H 1.48498 * 109.47199 * 329.99801 * 21 19 17 25 25 C 1.38232 * 120.00056 * 359.74738 * 15 14 13 26 26 C 1.38224 * 119.99967 * 90.00006 * 12 9 4 27 27 H 1.09001 * 109.46832 * 300.00199 * 1 2 3 28 28 H 1.09002 * 109.47153 * 60.00008 * 1 2 3 29 29 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47289 * 240.00075 * 2 1 3 31 31 H 1.09000 * 109.47140 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47230 * 299.99295 * 3 2 1 33 33 H 1.09001 * 109.47375 * 60.00133 * 3 2 1 34 34 H 1.08991 * 109.47463 * 204.99792 * 5 4 2 35 35 H 1.09000 * 109.46878 * 325.00020 * 5 4 2 36 36 H 0.96701 * 117.00118 * 180.02562 * 8 6 5 37 37 H 1.07998 * 120.00071 * 359.97438 * 13 12 9 38 38 H 1.08002 * 120.00049 * 180.22469 * 14 13 12 39 39 H 1.09002 * 109.46915 * 30.02122 * 16 15 14 40 40 H 1.09004 * 109.46770 * 150.02118 * 16 15 14 41 41 H 0.97004 * 120.00260 * 180.02562 * 20 19 17 42 42 H 1.08002 * 120.00465 * 179.97438 * 25 15 14 43 43 H 1.08006 * 120.00306 * 359.97438 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.6645 -0.1901 2.5268 6 6 0.3224 -0.7438 2.9312 7 8 -0.2767 -1.4812 2.1848 8 8 -0.2068 -0.4185 4.1211 9 16 2.9647 -2.0410 1.0443 10 8 2.8170 -2.7727 2.2534 11 8 2.6796 -2.5889 -0.2354 12 6 4.6409 -1.5001 0.9918 13 6 5.2342 -1.2052 -0.2215 14 6 6.5477 -0.7762 -0.2623 15 6 7.2709 -0.6521 0.9092 16 6 8.7048 -0.1903 0.8642 17 6 9.6131 -1.3848 0.7259 18 1 9.1939 -2.3789 0.6752 19 6 10.9791 -1.2085 0.6630 20 7 11.4894 0.0020 0.7242 21 14 12.1050 -2.6892 0.4908 22 1 12.3258 -2.9784 -0.9489 23 1 13.4072 -2.3993 1.1429 24 1 11.4769 -3.8669 1.1417 25 6 6.6792 -0.9519 2.1219 26 6 5.3640 -1.3759 2.1632 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8901 33 1 1.6767 1.9563 0.8900 34 1 2.4196 -0.5059 3.2465 35 1 1.6165 0.8986 2.5045 36 1 -1.0696 -0.7985 4.3364 37 1 4.6706 -1.3068 -1.1371 38 1 7.0102 -0.5424 -1.2098 39 1 8.8459 0.4741 0.0117 40 1 8.9437 0.3432 1.7842 41 1 12.4504 0.1261 0.6796 42 1 7.2443 -0.8553 3.0372 43 1 4.9016 -1.6101 3.1107 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887329625.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:38 Heat of formation + Delta-G solvation = -144.166804 kcal Electronic energy + Delta-G solvation = -28124.833846 eV Core-core repulsion = 24068.988065 eV Total energy + Delta-G solvation = -4055.845781 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.59703 -38.85501 -37.77897 -37.26604 -36.14000 -35.81891 -33.71350 -32.26868 -31.59818 -30.62907 -28.16757 -27.51845 -27.32492 -23.75818 -22.64086 -22.33237 -21.27815 -20.76581 -19.02679 -18.42962 -18.21790 -17.55564 -16.84588 -16.46920 -16.38141 -15.71403 -15.13872 -15.12048 -14.46083 -14.40637 -14.33819 -14.07151 -13.71898 -13.28045 -13.19177 -12.98842 -12.96943 -12.79734 -12.39117 -12.26804 -12.06878 -12.02256 -11.91531 -11.74641 -11.65638 -11.52025 -11.41966 -11.09990 -10.95927 -10.93358 -10.77351 -10.55190 -10.51888 -9.80116 -9.71278 -9.48553 -8.64189 -8.56368 -8.42903 -6.19617 -4.24748 0.30448 1.26932 1.74360 1.95078 2.59589 2.92686 3.22926 3.29645 3.33949 3.76495 4.01881 4.21071 4.30228 4.36282 4.67245 4.80333 4.90101 4.96276 4.96812 5.11229 5.17828 5.18187 5.23736 5.37965 5.43913 5.59531 5.67663 5.74843 5.82732 5.86528 6.00231 6.07353 6.19551 6.24913 6.27750 6.30809 6.47313 6.78943 6.86514 7.25376 7.38758 7.55213 7.63387 7.75456 8.10355 8.80077 9.40479 10.90379 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021758 B = 0.002759 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.583223 B =10145.265905 C =10300.492809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.138 3.862 3 C -0.167 4.167 4 N -0.979 5.979 5 C 0.133 3.867 6 C 0.460 3.540 7 O -0.500 6.500 8 O -0.517 6.517 9 S 2.693 3.307 10 O -0.959 6.959 11 O -0.954 6.954 12 C -0.704 4.704 13 C -0.022 4.022 14 C -0.144 4.144 15 C 0.028 3.972 16 C 0.039 3.961 17 C -0.519 4.519 18 H 0.059 0.941 19 C 0.061 3.939 20 N -0.891 5.891 21 Si 0.899 3.101 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.272 1.272 25 C -0.144 4.144 26 C -0.025 4.025 27 H 0.049 0.951 28 H 0.063 0.937 29 H 0.074 0.926 30 H 0.107 0.893 31 H 0.067 0.933 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.127 0.873 35 H 0.126 0.874 36 H 0.410 0.590 37 H 0.129 0.871 38 H 0.129 0.871 39 H 0.035 0.965 40 H 0.035 0.965 41 H 0.264 0.736 42 H 0.130 0.870 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.286 4.959 2.837 23.006 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.033 3.967 3 C -0.225 4.225 4 N -0.815 5.815 5 C 0.005 3.995 6 C 0.299 3.701 7 O -0.386 6.386 8 O -0.329 6.329 9 S 2.788 3.212 10 O -0.950 6.950 11 O -0.945 6.945 12 C -0.794 4.794 13 C -0.041 4.041 14 C -0.163 4.163 15 C 0.027 3.973 16 C 0.003 3.997 17 C -0.557 4.557 18 H 0.077 0.923 19 C -0.141 4.141 20 N -0.529 5.529 21 Si 0.726 3.274 22 H -0.204 1.204 23 H -0.210 1.210 24 H -0.197 1.197 25 C -0.163 4.163 26 C -0.044 4.044 27 H 0.069 0.931 28 H 0.082 0.918 29 H 0.093 0.907 30 H 0.125 0.875 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.078 0.922 34 H 0.144 0.856 35 H 0.144 0.856 36 H 0.269 0.731 37 H 0.147 0.853 38 H 0.147 0.853 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.074 0.926 42 H 0.147 0.853 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -22.224 4.159 2.477 22.745 hybrid contribution 0.737 -0.548 0.101 0.924 sum -21.486 3.611 2.578 21.940 Atomic orbital electron populations 1.22201 0.94181 1.03568 1.01367 1.21039 0.95465 0.93686 0.86518 1.22220 1.02402 0.95337 1.02570 1.57648 1.64826 1.48984 1.10047 1.20570 0.91834 1.02053 0.85027 1.24120 0.88668 0.78641 0.78656 1.90724 1.61777 1.33971 1.52161 1.84511 1.40326 1.70668 1.37401 1.01872 0.73399 0.72390 0.73544 1.93553 1.86381 1.67935 1.47112 1.93549 1.84411 1.74855 1.41642 1.30329 1.24134 1.24643 1.00259 1.20765 0.95557 0.92483 0.95340 1.21252 0.93735 1.02211 0.99103 1.21134 0.97340 0.86786 0.91993 1.18543 0.84927 0.97229 0.99044 1.20969 0.90656 0.92445 1.51582 0.92278 1.24999 0.98176 0.96119 0.94805 1.69942 1.12579 1.20786 1.49640 0.86478 0.79895 0.82621 0.78422 1.20434 1.21016 1.19678 1.21250 0.94404 1.01811 0.98820 1.20762 0.94723 0.93054 0.95876 0.93149 0.91818 0.90718 0.87532 0.91371 0.91072 0.92159 0.85561 0.85609 0.73079 0.85278 0.85270 0.94692 0.94679 0.92604 0.85254 0.85317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.39 7.76 37.16 0.29 -1.11 16 2 C 0.14 1.28 3.24 -67.93 -0.22 1.06 16 3 C -0.17 -1.19 9.16 37.16 0.34 -0.85 16 4 N -0.98 -10.50 2.36 -108.57 -0.26 -10.76 16 5 C 0.13 1.12 5.51 -5.19 -0.03 1.09 16 6 C 0.46 4.49 7.20 36.01 0.26 4.75 16 7 O -0.50 -6.39 14.19 -18.75 -0.27 -6.66 16 8 O -0.52 -3.66 13.42 -39.26 -0.53 -4.19 16 9 S 2.69 38.81 5.64 -107.50 -0.61 38.20 16 10 O -0.96 -15.78 16.25 -57.17 -0.93 -16.71 16 11 O -0.95 -15.92 15.84 -57.17 -0.91 -16.82 16 12 C -0.70 -10.74 5.97 -39.59 -0.24 -10.98 16 13 C -0.02 -0.34 9.52 -39.58 -0.38 -0.72 16 14 C -0.14 -2.58 9.70 -39.58 -0.38 -2.96 16 15 C 0.03 0.56 5.07 -104.62 -0.53 0.03 16 16 C 0.04 0.94 5.10 -29.04 -0.15 0.79 16 17 C -0.52 -13.86 9.09 -34.44 -0.31 -14.18 16 18 H 0.06 1.58 7.74 -52.49 -0.41 1.18 16 19 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 20 N -0.89 -25.21 13.29 55.43 0.74 -24.47 16 21 Si 0.90 20.93 29.54 -169.99 -5.02 15.91 16 22 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 25 C -0.14 -2.56 9.70 -39.58 -0.38 -2.94 16 26 C -0.02 -0.38 9.52 -39.58 -0.38 -0.76 16 27 H 0.05 0.42 6.53 -51.93 -0.34 0.08 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.07 0.85 6.96 -51.93 -0.36 0.49 16 30 H 0.11 1.05 6.92 -51.93 -0.36 0.69 16 31 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 33 H 0.06 0.35 6.69 -51.93 -0.35 0.01 16 34 H 0.13 0.93 7.61 -51.93 -0.40 0.53 16 35 H 0.13 0.66 6.45 -51.93 -0.33 0.32 16 36 H 0.41 1.34 9.10 45.56 0.41 1.76 16 37 H 0.13 1.74 7.61 -52.49 -0.40 1.34 16 38 H 0.13 2.19 8.06 -52.49 -0.42 1.77 16 39 H 0.03 0.87 8.09 -51.93 -0.42 0.45 16 40 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 41 H 0.26 7.07 8.31 -40.82 -0.34 6.73 16 42 H 0.13 2.17 8.06 -52.49 -0.42 1.75 16 43 H 0.13 1.66 7.62 -52.48 -0.40 1.26 16 LS Contribution 372.11 15.07 5.61 5.61 Total: -1.00 -34.77 372.11 -9.39 -44.16 By element: Atomic # 1 Polarization: 5.93 SS G_CDS: -5.02 Total: 0.92 kcal Atomic # 6 Polarization: -22.99 SS G_CDS: -2.21 Total: -25.20 kcal Atomic # 7 Polarization: -35.71 SS G_CDS: 0.48 Total: -35.23 kcal Atomic # 8 Polarization: -41.74 SS G_CDS: -2.63 Total: -44.37 kcal Atomic # 14 Polarization: 20.93 SS G_CDS: -5.02 Total: 15.91 kcal Atomic # 16 Polarization: 38.81 SS G_CDS: -0.61 Total: 38.20 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.77 -9.39 -44.16 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887329625.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.004 kcal (2) G-P(sol) polarization free energy of solvation -34.772 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.775 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.391 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds