Wall clock time and date at job start Sat Apr 11 2020 06:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47232 * 2 1 4 4 N 1.46506 * 109.47289 * 119.99947 * 2 1 3 5 5 C 1.46499 * 119.99936 * 299.99999 * 4 2 1 6 6 C 1.50704 * 109.46882 * 84.99554 * 5 4 2 7 7 O 1.20822 * 120.00452 * 0.02562 * 6 5 4 8 8 O 1.34231 * 119.99585 * 179.97438 * 6 5 4 9 9 S 1.65597 * 120.00079 * 119.72038 * 4 2 1 10 10 O 1.42095 * 106.40469 * 203.54076 * 9 4 2 11 11 O 1.42098 * 106.40441 * 336.46418 * 9 4 2 12 12 C 1.76207 * 107.21624 * 90.00391 * 9 4 2 13 13 C 1.38238 * 119.99673 * 269.72920 * 12 9 4 14 14 C 1.38231 * 119.99694 * 179.76874 * 13 12 9 15 15 C 1.38237 * 120.00023 * 0.50296 * 14 13 12 16 16 C 1.50703 * 120.00079 * 179.72591 * 15 14 13 17 17 C 1.50697 * 109.47112 * 270.01993 * 16 15 14 18 18 H 1.07999 * 119.99838 * 0.02562 * 17 16 15 19 19 C 1.37881 * 119.99840 * 179.97438 * 17 16 15 20 20 N 1.31509 * 119.99882 * 0.02562 * 19 17 16 21 21 Si 1.86800 * 119.99807 * 180.02562 * 19 17 16 22 22 H 1.48499 * 109.47323 * 89.99987 * 21 19 17 23 23 H 1.48495 * 109.47169 * 209.99941 * 21 19 17 24 24 H 1.48498 * 109.47199 * 329.99801 * 21 19 17 25 25 C 1.38232 * 120.00056 * 359.74738 * 15 14 13 26 26 C 1.38224 * 119.99967 * 90.00006 * 12 9 4 27 27 H 1.09001 * 109.46832 * 300.00199 * 1 2 3 28 28 H 1.09002 * 109.47153 * 60.00008 * 1 2 3 29 29 H 1.08996 * 109.46952 * 180.02562 * 1 2 3 30 30 H 1.09001 * 109.47289 * 240.00075 * 2 1 3 31 31 H 1.09000 * 109.47140 * 180.02562 * 3 2 1 32 32 H 1.09001 * 109.47230 * 299.99295 * 3 2 1 33 33 H 1.09001 * 109.47375 * 60.00133 * 3 2 1 34 34 H 1.08991 * 109.47463 * 204.99792 * 5 4 2 35 35 H 1.09000 * 109.46878 * 325.00020 * 5 4 2 36 36 H 0.96701 * 117.00118 * 180.02562 * 8 6 5 37 37 H 1.07998 * 120.00071 * 359.97438 * 13 12 9 38 38 H 1.08002 * 120.00049 * 180.22469 * 14 13 12 39 39 H 1.09002 * 109.46915 * 30.02122 * 16 15 14 40 40 H 1.09004 * 109.46770 * 150.02118 * 16 15 14 41 41 H 0.97004 * 120.00260 * 180.02562 * 20 19 17 42 42 H 1.08002 * 120.00465 * 179.97438 * 25 15 14 43 43 H 1.08006 * 120.00306 * 359.97438 * 26 12 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0184 -0.6906 1.1962 5 6 1.6645 -0.1901 2.5268 6 6 0.3224 -0.7438 2.9312 7 8 -0.2767 -1.4812 2.1848 8 8 -0.2068 -0.4185 4.1211 9 16 2.9647 -2.0410 1.0443 10 8 2.8170 -2.7727 2.2534 11 8 2.6796 -2.5889 -0.2354 12 6 4.6409 -1.5001 0.9918 13 6 5.2342 -1.2052 -0.2215 14 6 6.5477 -0.7762 -0.2623 15 6 7.2709 -0.6521 0.9092 16 6 8.7048 -0.1903 0.8642 17 6 9.6131 -1.3848 0.7259 18 1 9.1939 -2.3789 0.6752 19 6 10.9791 -1.2085 0.6630 20 7 11.4894 0.0020 0.7242 21 14 12.1050 -2.6892 0.4908 22 1 12.3258 -2.9784 -0.9489 23 1 13.4072 -2.3993 1.1429 24 1 11.4769 -3.8669 1.1417 25 6 6.6792 -0.9519 2.1219 26 6 5.3640 -1.3759 2.1632 27 1 -0.3633 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 3.1300 1.4424 -0.0005 32 1 1.6768 1.9563 -0.8901 33 1 1.6767 1.9563 0.8900 34 1 2.4196 -0.5059 3.2465 35 1 1.6165 0.8986 2.5045 36 1 -1.0696 -0.7985 4.3364 37 1 4.6706 -1.3068 -1.1371 38 1 7.0102 -0.5424 -1.2098 39 1 8.8459 0.4741 0.0117 40 1 8.9437 0.3432 1.7842 41 1 12.4504 0.1261 0.6796 42 1 7.2443 -0.8553 3.0372 43 1 4.9016 -1.6101 3.1107 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887329625.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:38 Heat of formation + Delta-G solvation = -167.954477 kcal Electronic energy + Delta-G solvation = -28125.865357 eV Core-core repulsion = 24068.988065 eV Total energy + Delta-G solvation = -4056.877291 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.31350 -40.23509 -38.62528 -38.34926 -37.04960 -36.85147 -35.59053 -33.32111 -32.97494 -31.95751 -29.26153 -28.89038 -27.98852 -25.58429 -23.75984 -23.22798 -22.53626 -21.87515 -19.98501 -19.25145 -19.14842 -18.65594 -18.51368 -17.69762 -17.20649 -16.82925 -16.70098 -16.12987 -15.98266 -15.58759 -15.31223 -15.14135 -14.63831 -14.55620 -14.45489 -13.98565 -13.92436 -13.73365 -13.65583 -13.40778 -13.40037 -13.26488 -13.19743 -12.91368 -12.72705 -12.67046 -12.63010 -12.37864 -12.21677 -12.10083 -12.03245 -11.75266 -11.65023 -11.52615 -11.41989 -10.64508 -10.35107 -9.95683 -9.94049 -8.26514 -6.38869 -0.82087 -0.07960 0.40638 1.24839 1.38809 1.39503 1.50544 1.73399 2.17496 2.35283 2.59081 2.77462 3.06435 3.12655 3.53095 3.85324 3.96916 4.00526 4.16833 4.17753 4.29252 4.32618 4.36694 4.46247 4.49149 4.55693 4.79193 4.81491 4.82682 4.91876 5.01259 5.10414 5.18832 5.26414 5.28012 5.34028 5.37905 5.44829 5.53269 5.68217 5.71953 5.87700 5.92588 6.10864 6.73138 7.03783 7.30260 8.83445 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.021758 B = 0.002759 C = 0.002718 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.583223 B =10145.265905 C =10300.492809 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.131 3.869 3 C -0.162 4.162 4 N -0.973 5.973 5 C 0.120 3.880 6 C 0.461 3.539 7 O -0.537 6.537 8 O -0.510 6.510 9 S 2.710 3.290 10 O -0.980 6.980 11 O -0.979 6.979 12 C -0.696 4.696 13 C -0.018 4.018 14 C -0.152 4.152 15 C -0.001 4.001 16 C 0.048 3.952 17 C -0.534 4.534 18 H 0.053 0.947 19 C 0.011 3.989 20 N -0.924 5.924 21 Si 0.962 3.038 22 H -0.272 1.272 23 H -0.278 1.278 24 H -0.268 1.268 25 C -0.151 4.151 26 C -0.017 4.017 27 H 0.057 0.943 28 H 0.081 0.919 29 H 0.046 0.954 30 H 0.098 0.902 31 H 0.060 0.940 32 H 0.085 0.915 33 H 0.077 0.923 34 H 0.140 0.860 35 H 0.164 0.836 36 H 0.427 0.573 37 H 0.153 0.847 38 H 0.130 0.870 39 H 0.014 0.986 40 H 0.015 0.985 41 H 0.267 0.733 42 H 0.133 0.867 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.862 5.142 3.381 24.643 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.027 3.973 3 C -0.221 4.221 4 N -0.811 5.811 5 C -0.007 4.007 6 C 0.302 3.698 7 O -0.427 6.427 8 O -0.323 6.323 9 S 2.804 3.196 10 O -0.970 6.970 11 O -0.970 6.970 12 C -0.785 4.785 13 C -0.037 4.037 14 C -0.171 4.171 15 C -0.001 4.001 16 C 0.011 3.989 17 C -0.572 4.572 18 H 0.071 0.929 19 C -0.188 4.188 20 N -0.564 5.564 21 Si 0.786 3.214 22 H -0.198 1.198 23 H -0.203 1.203 24 H -0.193 1.193 25 C -0.170 4.170 26 C -0.037 4.037 27 H 0.076 0.924 28 H 0.100 0.900 29 H 0.065 0.935 30 H 0.116 0.884 31 H 0.079 0.921 32 H 0.103 0.897 33 H 0.096 0.904 34 H 0.158 0.842 35 H 0.181 0.819 36 H 0.289 0.711 37 H 0.170 0.830 38 H 0.148 0.852 39 H 0.032 0.968 40 H 0.034 0.966 41 H 0.076 0.924 42 H 0.150 0.850 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -23.798 4.346 3.042 24.383 hybrid contribution 1.040 -0.559 -0.017 1.181 sum -22.759 3.787 3.025 23.269 Atomic orbital electron populations 1.22148 0.93842 1.02172 1.02660 1.21240 0.95673 0.94794 0.85581 1.22203 1.01900 0.93773 1.04200 1.57351 1.63839 1.48186 1.11719 1.21020 0.91616 1.04185 0.83883 1.24338 0.88859 0.77853 0.78752 1.90731 1.62883 1.35700 1.53343 1.84473 1.41465 1.70340 1.36013 1.01236 0.73024 0.72784 0.72522 1.93522 1.86496 1.69234 1.47730 1.93516 1.84547 1.76089 1.42813 1.30646 1.24937 1.22860 1.00026 1.20982 0.94659 0.91412 0.96641 1.21286 0.94642 1.02657 0.98488 1.20829 0.95697 0.89685 0.93906 1.18265 0.87630 0.95966 0.97002 1.21300 0.91588 0.93085 1.51234 0.92862 1.25828 0.99725 0.98782 0.94472 1.70045 1.13016 1.22694 1.50615 0.85492 0.77998 0.79271 0.78605 1.19758 1.20339 1.19285 1.21314 0.95507 1.02099 0.98112 1.21033 0.93623 0.91686 0.97318 0.92361 0.89978 0.93457 0.88434 0.92091 0.89658 0.90403 0.84209 0.81861 0.71146 0.82972 0.85188 0.96770 0.96636 0.92381 0.84951 0.82354 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.41 7.76 71.98 0.56 -1.85 16 2 C 0.13 2.16 3.24 44.99 0.15 2.31 16 3 C -0.16 -1.81 9.16 71.98 0.66 -1.15 16 4 N -0.97 -18.69 2.36 -497.42 -1.17 -19.87 16 5 C 0.12 1.65 5.51 85.63 0.47 2.13 16 6 C 0.46 7.92 7.20 71.24 0.51 8.44 16 7 O -0.54 -13.05 14.19 21.98 0.31 -12.74 16 8 O -0.51 -5.83 13.42 -51.42 -0.69 -6.52 16 9 S 2.71 73.61 5.64 -56.49 -0.32 73.29 16 10 O -0.98 -30.49 16.25 -128.00 -2.08 -32.57 16 11 O -0.98 -31.64 15.84 -128.00 -2.03 -33.67 16 12 C -0.70 -20.03 5.97 22.27 0.13 -19.90 16 13 C -0.02 -0.54 9.52 22.27 0.21 -0.32 16 14 C -0.15 -5.43 9.70 22.27 0.22 -5.22 16 15 C 0.00 -0.03 5.07 -19.87 -0.10 -0.13 16 16 C 0.05 2.40 5.10 29.10 0.15 2.55 16 17 C -0.53 -29.26 9.09 25.60 0.23 -29.03 16 18 H 0.05 2.91 7.74 -2.91 -0.02 2.88 16 19 C 0.01 0.61 5.46 84.66 0.46 1.07 16 20 N -0.92 -53.40 13.29 21.45 0.28 -53.12 16 21 Si 0.96 43.17 29.54 68.60 2.03 45.19 16 22 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 23 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 24 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 25 C -0.15 -5.33 9.70 22.27 0.22 -5.11 16 26 C -0.02 -0.51 9.52 22.27 0.21 -0.30 16 27 H 0.06 0.83 6.53 -2.39 -0.02 0.82 16 28 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 29 H 0.05 1.04 6.96 -2.39 -0.02 1.02 16 30 H 0.10 1.78 6.92 -2.39 -0.02 1.76 16 31 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.08 0.74 8.14 -2.39 -0.02 0.72 16 33 H 0.08 0.60 6.69 -2.39 -0.02 0.58 16 34 H 0.14 1.59 7.61 -2.39 -0.02 1.57 16 35 H 0.16 1.01 6.45 -2.39 -0.02 0.99 16 36 H 0.43 1.78 9.10 -74.06 -0.67 1.10 16 37 H 0.15 3.84 7.61 -2.91 -0.02 3.82 16 38 H 0.13 4.50 8.06 -2.91 -0.02 4.47 16 39 H 0.01 0.74 8.09 -2.39 -0.02 0.72 16 40 H 0.02 0.81 8.09 -2.39 -0.02 0.79 16 41 H 0.27 14.50 8.31 -92.71 -0.77 13.73 16 42 H 0.13 4.46 8.06 -2.91 -0.02 4.44 16 43 H 0.16 3.64 7.62 -2.91 -0.02 3.62 16 Total: -1.00 -76.15 372.11 0.78 -75.37 By element: Atomic # 1 Polarization: 10.79 SS G_CDS: 0.37 Total: 11.16 kcal Atomic # 6 Polarization: -50.60 SS G_CDS: 4.08 Total: -46.52 kcal Atomic # 7 Polarization: -72.10 SS G_CDS: -0.89 Total: -72.98 kcal Atomic # 8 Polarization: -81.01 SS G_CDS: -4.49 Total: -85.50 kcal Atomic # 14 Polarization: 43.17 SS G_CDS: 2.03 Total: 45.19 kcal Atomic # 16 Polarization: 73.61 SS G_CDS: -0.32 Total: 73.29 kcal Total: -76.15 0.78 -75.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887329625.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.585 kcal (2) G-P(sol) polarization free energy of solvation -76.151 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.737 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.954 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds