Wall clock time and date at job start Sat Apr 11 2020 06:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46828 * 2 1 4 4 H 1.09000 * 109.46861 * 55.00014 * 3 2 1 5 5 C 1.50706 * 109.46927 * 174.99637 * 3 2 1 6 6 O 1.20825 * 119.99859 * 119.99464 * 5 3 2 7 7 O 1.34224 * 120.00295 * 300.00423 * 5 3 2 8 8 N 1.46493 * 109.47297 * 294.99663 * 3 2 1 9 9 C 1.46509 * 120.00100 * 300.00353 * 8 3 2 10 10 S 1.65602 * 120.00090 * 120.00118 * 8 3 2 11 11 O 1.42102 * 106.40381 * 203.54401 * 10 8 3 12 12 O 1.42103 * 106.40214 * 336.46113 * 10 8 3 13 13 C 1.76192 * 107.21815 * 90.00242 * 10 8 3 14 14 C 1.38237 * 120.00098 * 269.72892 * 13 10 8 15 15 C 1.38237 * 120.00182 * 179.74503 * 14 13 10 16 16 C 1.38242 * 119.99657 * 0.52356 * 15 14 13 17 17 C 1.50695 * 119.99543 * 179.76633 * 16 15 14 18 18 C 1.50703 * 109.47491 * 269.97913 * 17 16 15 19 19 H 1.07996 * 119.99830 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99937 * 180.02562 * 18 17 16 21 21 N 1.31521 * 120.00048 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99817 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47431 * 359.97438 * 22 20 18 24 24 H 1.48507 * 109.47075 * 119.99853 * 22 20 18 25 25 H 1.48496 * 109.47120 * 239.99846 * 22 20 18 26 26 C 1.38235 * 119.99925 * 359.75300 * 16 15 14 27 27 C 1.38229 * 120.00292 * 359.97319 * 26 16 15 28 28 H 1.09001 * 109.47360 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47417 * 300.00258 * 1 2 3 30 30 H 1.08997 * 109.47313 * 60.00447 * 1 2 3 31 31 H 1.08997 * 109.46912 * 239.99744 * 2 1 3 32 32 H 1.09003 * 109.46632 * 119.99568 * 2 1 3 33 33 H 0.96700 * 117.00196 * 179.97438 * 7 5 3 34 34 H 1.09000 * 109.46832 * 89.99647 * 9 8 3 35 35 H 1.08992 * 109.46870 * 209.99535 * 9 8 3 36 36 H 1.09000 * 109.46903 * 330.00274 * 9 8 3 37 37 H 1.08002 * 119.99848 * 359.97438 * 14 13 10 38 38 H 1.07992 * 120.00204 * 180.29712 * 15 14 13 39 39 H 1.08995 * 109.47384 * 29.98887 * 17 16 15 40 40 H 1.09007 * 109.46596 * 149.98361 * 17 16 15 41 41 H 0.96999 * 119.99788 * 180.02562 * 21 20 18 42 42 H 1.08006 * 119.99732 * 180.02562 * 26 16 15 43 43 H 1.07998 * 120.00274 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 8 4.2191 1.9416 -0.7444 7 8 4.1273 0.8934 1.1988 8 7 1.6524 2.0975 -1.2518 9 6 2.1140 1.5589 -2.5337 10 16 0.6927 3.4466 -1.2178 11 8 0.0531 3.5160 -2.4849 12 8 -0.0197 3.4014 0.0109 13 6 1.7611 4.8444 -1.1225 14 6 2.1408 5.3413 0.1104 15 6 2.9832 6.4347 0.1852 16 6 3.4373 7.0380 -0.9728 17 6 4.3514 8.2332 -0.8911 18 6 3.5274 9.4946 -0.8576 19 1 2.4495 9.4365 -0.8915 20 6 4.1497 10.7227 -0.7835 21 7 5.4623 10.7934 -0.7427 22 14 3.1283 12.2861 -0.7411 23 1 1.6860 11.9370 -0.7991 24 1 3.4087 13.0267 0.5151 25 1 3.4781 13.1376 -1.9064 26 6 3.0529 6.5446 -2.2056 27 6 2.2151 5.4477 -2.2804 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 5.0934 0.9183 1.2336 34 1 1.3915 0.8312 -2.9033 35 1 2.2131 2.3707 -3.2542 36 1 3.0806 1.0740 -2.3972 37 1 1.7822 4.8729 1.0151 38 1 3.2837 6.8200 1.1483 39 1 4.9540 8.1685 0.0148 40 1 5.0061 8.2500 -1.7625 41 1 5.9000 11.6575 -0.6902 42 1 3.4080 7.0156 -3.1103 43 1 1.9152 5.0620 -3.2436 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000887331455.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:43 Heat of formation + Delta-G solvation = -144.360561 kcal Electronic energy + Delta-G solvation = -28283.634664 eV Core-core repulsion = 24227.780482 eV Total energy + Delta-G solvation = -4055.854182 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.73665 -38.78997 -37.50805 -37.25771 -36.21631 -35.85316 -33.67942 -32.88361 -31.55366 -30.57678 -28.70754 -27.42939 -26.09673 -23.72674 -22.93473 -22.35303 -21.40229 -20.80568 -19.14487 -18.51386 -17.78283 -17.57517 -17.11904 -16.44706 -16.08414 -15.85227 -15.16820 -15.11877 -14.71625 -14.37494 -14.31676 -13.98665 -13.78571 -13.48486 -13.13966 -13.09662 -12.82377 -12.69888 -12.31771 -12.25717 -12.22973 -12.06138 -11.90675 -11.82542 -11.71483 -11.48793 -11.38844 -11.26989 -11.03586 -10.93030 -10.79179 -10.50210 -10.48964 -9.75618 -9.66239 -9.38673 -8.58224 -8.53834 -8.36823 -6.16966 -4.21967 0.31897 1.33043 1.80858 1.89961 2.51501 2.92323 3.23235 3.31171 3.36546 3.68728 4.05639 4.22298 4.25884 4.38039 4.49260 4.61762 4.81227 4.98803 5.14477 5.17813 5.20498 5.22067 5.32298 5.38316 5.53783 5.60982 5.65544 5.72794 5.73200 5.79893 5.91666 5.96315 6.16137 6.22736 6.25801 6.32845 6.51667 6.84104 6.91291 7.30094 7.44182 7.59650 7.60624 7.78321 8.13490 8.83092 9.42984 10.93134 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018640 B = 0.003050 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.779714 B = 9178.044884 C = 9817.605977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 C 0.160 3.840 4 H 0.139 0.861 5 C 0.464 3.536 6 O -0.492 6.492 7 O -0.515 6.515 8 N -0.983 5.983 9 C 0.093 3.907 10 S 2.692 3.308 11 O -0.953 6.953 12 O -0.958 6.958 13 C -0.704 4.704 14 C -0.025 4.025 15 C -0.144 4.144 16 C 0.028 3.972 17 C 0.039 3.961 18 C -0.517 4.517 19 H 0.060 0.940 20 C 0.060 3.940 21 N -0.891 5.891 22 Si 0.899 3.101 23 H -0.271 1.271 24 H -0.282 1.282 25 H -0.282 1.282 26 C -0.144 4.144 27 C -0.019 4.019 28 H 0.063 0.937 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.075 0.925 32 H 0.090 0.910 33 H 0.412 0.588 34 H 0.060 0.940 35 H 0.077 0.923 36 H 0.079 0.921 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.034 0.966 40 H 0.035 0.965 41 H 0.263 0.737 42 H 0.129 0.871 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.175 -24.177 1.647 24.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.161 4.161 3 C 0.051 3.949 4 H 0.156 0.844 5 C 0.302 3.698 6 O -0.378 6.378 7 O -0.327 6.327 8 N -0.819 5.819 9 C -0.052 4.052 10 S 2.787 3.213 11 O -0.943 6.943 12 O -0.948 6.948 13 C -0.793 4.793 14 C -0.045 4.045 15 C -0.163 4.163 16 C 0.028 3.972 17 C 0.002 3.998 18 C -0.555 4.555 19 H 0.078 0.922 20 C -0.142 4.142 21 N -0.530 5.530 22 Si 0.726 3.274 23 H -0.196 1.196 24 H -0.208 1.208 25 H -0.208 1.208 26 C -0.163 4.163 27 C -0.039 4.039 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.271 0.729 34 H 0.079 0.921 35 H 0.095 0.905 36 H 0.098 0.902 37 H 0.145 0.855 38 H 0.146 0.854 39 H 0.053 0.947 40 H 0.053 0.947 41 H 0.073 0.927 42 H 0.147 0.853 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -6.177 -23.946 1.334 24.765 hybrid contribution 1.074 1.512 0.039 1.855 sum -5.103 -22.434 1.373 23.048 Atomic orbital electron populations 1.21795 0.94038 1.02390 1.03007 1.21802 0.97717 0.92652 1.03971 1.20469 0.87456 0.98196 0.88733 0.84365 1.23923 0.92394 0.74393 0.79057 1.90762 1.65348 1.41274 1.40377 1.84501 1.29044 1.74318 1.44842 1.57551 1.69114 1.44389 1.10801 1.21548 1.00646 1.00353 0.82668 1.01921 0.73524 0.72340 0.73545 1.93569 1.72115 1.86280 1.42375 1.93552 1.69260 1.86481 1.45535 1.30292 1.25297 1.23622 1.00132 1.20721 0.93513 0.95208 0.95049 1.21222 0.99369 0.96506 0.99246 1.21112 0.91259 0.92793 0.92067 1.18543 0.93424 0.88795 0.99002 1.21012 0.93109 0.89651 1.51694 0.92211 1.25012 0.95032 0.99312 0.94836 1.69963 1.07942 1.25270 1.49801 0.86419 0.80478 0.82743 0.77749 1.19555 1.20794 1.20797 1.21237 0.99612 0.96893 0.98526 1.20740 0.92851 0.94235 0.96065 0.91750 0.91341 0.92696 0.90634 0.89183 0.72857 0.92144 0.90454 0.90197 0.85533 0.85362 0.94734 0.94688 0.92688 0.85292 0.85343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.80 37.16 0.36 -0.76 16 2 C -0.12 -0.83 5.33 -26.73 -0.14 -0.97 16 3 C 0.16 1.50 2.54 -69.08 -0.18 1.32 16 4 H 0.14 1.24 6.91 -51.93 -0.36 0.88 16 5 C 0.46 4.61 7.36 36.01 0.27 4.88 16 6 O -0.49 -6.46 15.26 -18.75 -0.29 -6.74 16 7 O -0.52 -3.71 13.23 -39.24 -0.52 -4.23 16 8 N -0.98 -10.84 2.30 -115.85 -0.27 -11.11 16 9 C 0.09 0.88 8.80 59.85 0.53 1.41 16 10 S 2.69 38.23 5.64 -107.50 -0.61 37.62 16 11 O -0.95 -15.31 16.36 -57.17 -0.94 -16.24 16 12 O -0.96 -14.48 15.84 -57.17 -0.91 -15.39 16 13 C -0.70 -11.67 5.97 -39.58 -0.24 -11.91 16 14 C -0.03 -0.43 9.52 -39.58 -0.38 -0.81 16 15 C -0.14 -2.78 9.70 -39.58 -0.38 -3.17 16 16 C 0.03 0.60 5.07 -104.62 -0.53 0.07 16 17 C 0.04 0.98 5.10 -29.04 -0.15 0.83 16 18 C -0.52 -14.19 9.09 -34.44 -0.31 -14.50 16 19 H 0.06 1.64 7.74 -52.49 -0.41 1.24 16 20 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 21 N -0.89 -25.77 13.29 55.43 0.74 -25.03 16 22 Si 0.90 21.27 29.54 -169.99 -5.02 16.25 16 23 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 24 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 25 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 26 C -0.14 -2.79 9.70 -39.59 -0.38 -3.18 16 27 C -0.02 -0.33 9.52 -39.58 -0.38 -0.71 16 28 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 0.46 7.75 -51.93 -0.40 0.06 16 31 H 0.07 0.45 7.51 -51.93 -0.39 0.06 16 32 H 0.09 0.48 8.00 -51.93 -0.42 0.07 16 33 H 0.41 1.51 9.10 45.56 0.41 1.92 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 35 H 0.08 0.76 7.79 -51.93 -0.40 0.36 16 36 H 0.08 0.73 6.28 -51.93 -0.33 0.40 16 37 H 0.13 1.80 7.61 -52.49 -0.40 1.40 16 38 H 0.13 2.33 8.06 -52.49 -0.42 1.90 16 39 H 0.03 0.90 8.08 -51.93 -0.42 0.48 16 40 H 0.03 0.91 8.09 -51.92 -0.42 0.49 16 41 H 0.26 7.17 8.31 -40.82 -0.34 6.83 16 42 H 0.13 2.37 8.06 -52.48 -0.42 1.94 16 43 H 0.13 1.90 7.62 -52.49 -0.40 1.50 16 LS Contribution 377.08 15.07 5.68 5.68 Total: -1.00 -34.55 377.08 -9.31 -43.86 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -5.18 Total: 1.26 kcal Atomic # 6 Polarization: -23.92 SS G_CDS: -2.01 Total: -25.93 kcal Atomic # 7 Polarization: -36.61 SS G_CDS: 0.47 Total: -36.14 kcal Atomic # 8 Polarization: -39.96 SS G_CDS: -2.65 Total: -42.61 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Atomic # 16 Polarization: 38.23 SS G_CDS: -0.61 Total: 37.62 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -34.55 -9.31 -43.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887331455.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.501 kcal (2) G-P(sol) polarization free energy of solvation -34.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.859 kcal (6) G-S(sol) free energy of system = (1) + (5) -144.361 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds