Wall clock time and date at job start Sat Apr 11 2020 06:16:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52998 * 109.46828 * 2 1 4 4 H 1.09000 * 109.46861 * 55.00014 * 3 2 1 5 5 C 1.50706 * 109.46927 * 174.99637 * 3 2 1 6 6 O 1.20825 * 119.99859 * 119.99464 * 5 3 2 7 7 O 1.34224 * 120.00295 * 300.00423 * 5 3 2 8 8 N 1.46493 * 109.47297 * 294.99663 * 3 2 1 9 9 C 1.46509 * 120.00100 * 300.00353 * 8 3 2 10 10 S 1.65602 * 120.00090 * 120.00118 * 8 3 2 11 11 O 1.42102 * 106.40381 * 203.54401 * 10 8 3 12 12 O 1.42103 * 106.40214 * 336.46113 * 10 8 3 13 13 C 1.76192 * 107.21815 * 90.00242 * 10 8 3 14 14 C 1.38237 * 120.00098 * 269.72892 * 13 10 8 15 15 C 1.38237 * 120.00182 * 179.74503 * 14 13 10 16 16 C 1.38242 * 119.99657 * 0.52356 * 15 14 13 17 17 C 1.50695 * 119.99543 * 179.76633 * 16 15 14 18 18 C 1.50703 * 109.47491 * 269.97913 * 17 16 15 19 19 H 1.07996 * 119.99830 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99937 * 180.02562 * 18 17 16 21 21 N 1.31521 * 120.00048 * 0.02562 * 20 18 17 22 22 Si 1.86795 * 119.99817 * 180.02562 * 20 18 17 23 23 H 1.48503 * 109.47431 * 359.97438 * 22 20 18 24 24 H 1.48507 * 109.47075 * 119.99853 * 22 20 18 25 25 H 1.48496 * 109.47120 * 239.99846 * 22 20 18 26 26 C 1.38235 * 119.99925 * 359.75300 * 16 15 14 27 27 C 1.38229 * 120.00292 * 359.97319 * 26 16 15 28 28 H 1.09001 * 109.47360 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.47417 * 300.00258 * 1 2 3 30 30 H 1.08997 * 109.47313 * 60.00447 * 1 2 3 31 31 H 1.08997 * 109.46912 * 239.99744 * 2 1 3 32 32 H 1.09003 * 109.46632 * 119.99568 * 2 1 3 33 33 H 0.96700 * 117.00196 * 179.97438 * 7 5 3 34 34 H 1.09000 * 109.46832 * 89.99647 * 9 8 3 35 35 H 1.08992 * 109.46870 * 209.99535 * 9 8 3 36 36 H 1.09000 * 109.46903 * 330.00274 * 9 8 3 37 37 H 1.08002 * 119.99848 * 359.97438 * 14 13 10 38 38 H 1.07992 * 120.00204 * 180.29712 * 15 14 13 39 39 H 1.08995 * 109.47384 * 29.98887 * 17 16 15 40 40 H 1.09007 * 109.46596 * 149.98361 * 17 16 15 41 41 H 0.96999 * 119.99788 * 180.02562 * 21 20 18 42 42 H 1.08006 * 119.99732 * 180.02562 * 26 16 15 43 43 H 1.07998 * 120.00274 * 180.02562 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6053 1.9815 0.8418 5 6 3.5419 1.4443 0.1239 6 8 4.2191 1.9416 -0.7444 7 8 4.1273 0.8934 1.1988 8 7 1.6524 2.0975 -1.2518 9 6 2.1140 1.5589 -2.5337 10 16 0.6927 3.4466 -1.2178 11 8 0.0531 3.5160 -2.4849 12 8 -0.0197 3.4014 0.0109 13 6 1.7611 4.8444 -1.1225 14 6 2.1408 5.3413 0.1104 15 6 2.9832 6.4347 0.1852 16 6 3.4373 7.0380 -0.9728 17 6 4.3514 8.2332 -0.8911 18 6 3.5274 9.4946 -0.8576 19 1 2.4495 9.4365 -0.8915 20 6 4.1497 10.7227 -0.7835 21 7 5.4623 10.7934 -0.7427 22 14 3.1283 12.2861 -0.7411 23 1 1.6860 11.9370 -0.7991 24 1 3.4087 13.0267 0.5151 25 1 3.4781 13.1376 -1.9064 26 6 3.0529 6.5446 -2.2056 27 6 2.2151 5.4477 -2.2804 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5139 0.8899 30 1 -0.3634 0.5137 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 5.0934 0.9183 1.2336 34 1 1.3915 0.8312 -2.9033 35 1 2.2131 2.3707 -3.2542 36 1 3.0806 1.0740 -2.3972 37 1 1.7822 4.8729 1.0151 38 1 3.2837 6.8200 1.1483 39 1 4.9540 8.1685 0.0148 40 1 5.0061 8.2500 -1.7625 41 1 5.9000 11.6575 -0.6902 42 1 3.4080 7.0156 -3.1103 43 1 1.9152 5.0620 -3.2436 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000887331455.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:42 Heat of formation + Delta-G solvation = -167.655256 kcal Electronic energy + Delta-G solvation = -28284.644798 eV Core-core repulsion = 24227.780482 eV Total energy + Delta-G solvation = -4056.864316 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.48942 -40.27280 -38.53320 -38.14243 -37.08889 -36.92384 -35.63085 -33.57146 -33.33551 -32.01777 -29.40101 -29.26918 -26.88490 -25.62651 -23.79440 -23.54644 -22.56052 -22.01630 -20.16053 -19.44218 -18.79485 -18.62477 -18.56336 -17.94475 -17.11564 -16.87821 -16.62421 -16.26525 -16.03708 -15.68253 -15.47909 -15.07810 -14.68864 -14.61186 -14.52467 -14.14407 -13.98232 -13.84777 -13.56336 -13.45501 -13.43786 -13.29620 -13.17152 -12.97118 -12.76140 -12.71053 -12.68939 -12.53304 -12.21446 -12.09845 -12.07584 -11.81019 -11.70154 -11.61816 -11.42684 -10.68294 -10.28045 -10.01336 -9.96370 -8.29408 -6.42676 -0.81058 -0.10885 0.34900 1.15219 1.36218 1.37245 1.50468 1.62487 2.11557 2.33076 2.50116 2.70351 3.03047 3.12285 3.49975 3.77971 3.85588 3.88689 3.91426 4.11093 4.20274 4.38916 4.41853 4.43833 4.59035 4.67189 4.76745 4.82636 4.84530 4.86563 4.96987 5.02750 5.12588 5.16299 5.20248 5.22056 5.28123 5.36231 5.46878 5.62433 5.64398 5.81037 5.88087 6.06485 6.69079 6.97340 7.26625 8.81079 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018640 B = 0.003050 C = 0.002851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1501.779714 B = 9178.044884 C = 9817.605977 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.115 4.115 3 C 0.150 3.850 4 H 0.144 0.856 5 C 0.470 3.530 6 O -0.530 6.530 7 O -0.506 6.506 8 N -0.975 5.975 9 C 0.084 3.916 10 S 2.715 3.285 11 O -0.969 6.969 12 O -0.964 6.964 13 C -0.706 4.706 14 C -0.022 4.022 15 C -0.155 4.155 16 C -0.003 4.003 17 C 0.049 3.951 18 C -0.534 4.534 19 H 0.054 0.946 20 C 0.009 3.991 21 N -0.926 5.926 22 Si 0.967 3.033 23 H -0.267 1.267 24 H -0.274 1.274 25 H -0.275 1.275 26 C -0.156 4.156 27 C -0.020 4.020 28 H 0.082 0.918 29 H 0.062 0.938 30 H 0.041 0.959 31 H 0.086 0.914 32 H 0.109 0.891 33 H 0.428 0.572 34 H 0.084 0.916 35 H 0.072 0.928 36 H 0.084 0.916 37 H 0.157 0.843 38 H 0.131 0.869 39 H 0.013 0.987 40 H 0.012 0.988 41 H 0.268 0.732 42 H 0.130 0.870 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.763 -26.212 2.108 27.153 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.154 4.154 3 C 0.042 3.958 4 H 0.161 0.839 5 C 0.311 3.689 6 O -0.418 6.418 7 O -0.319 6.319 8 N -0.813 5.813 9 C -0.060 4.060 10 S 2.806 3.194 11 O -0.959 6.959 12 O -0.954 6.954 13 C -0.793 4.793 14 C -0.042 4.042 15 C -0.174 4.174 16 C -0.004 4.004 17 C 0.012 3.988 18 C -0.571 4.571 19 H 0.073 0.927 20 C -0.190 4.190 21 N -0.565 5.565 22 Si 0.791 3.209 23 H -0.191 1.191 24 H -0.199 1.199 25 H -0.200 1.200 26 C -0.174 4.174 27 C -0.039 4.039 28 H 0.101 0.899 29 H 0.081 0.919 30 H 0.060 0.940 31 H 0.105 0.895 32 H 0.127 0.873 33 H 0.291 0.709 34 H 0.102 0.898 35 H 0.090 0.910 36 H 0.103 0.897 37 H 0.175 0.825 38 H 0.149 0.851 39 H 0.031 0.969 40 H 0.030 0.970 41 H 0.077 0.923 42 H 0.148 0.852 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -7.739 -25.968 1.817 27.157 hybrid contribution 1.575 1.942 -0.063 2.502 sum -6.164 -24.025 1.754 24.865 Atomic orbital electron populations 1.21845 0.94328 1.03361 1.02104 1.21828 0.97324 0.90817 1.05470 1.20808 0.87316 0.99798 0.87890 0.83900 1.23988 0.92545 0.73551 0.78862 1.90763 1.66185 1.43091 1.41808 1.84459 1.30621 1.73382 1.43422 1.57316 1.68984 1.42813 1.12223 1.21759 1.01671 1.00695 0.81828 1.01340 0.73147 0.71977 0.72897 1.93548 1.72602 1.86585 1.43158 1.93540 1.69507 1.86570 1.45807 1.30933 1.24225 1.24436 0.99683 1.21028 0.92409 0.94149 0.96570 1.21310 1.00065 0.97371 0.98652 1.20835 0.92725 0.92889 0.93928 1.18259 0.93471 0.90308 0.96744 1.21308 0.93090 0.91082 1.51667 0.92747 1.25898 0.96155 1.02702 0.94267 1.70071 1.09554 1.26316 1.50578 0.85364 0.78830 0.78538 0.78137 1.19142 1.19907 1.20007 1.21308 1.00418 0.97875 0.97846 1.21011 0.91935 0.93242 0.97676 0.89926 0.91895 0.93954 0.89550 0.87258 0.70939 0.89780 0.90962 0.89697 0.82529 0.85089 0.96900 0.97012 0.92330 0.85245 0.82843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.85 9.80 71.98 0.71 -1.14 16 2 C -0.12 -1.18 5.33 30.59 0.16 -1.02 16 3 C 0.15 2.41 2.54 44.25 0.11 2.52 16 4 H 0.14 2.18 6.91 -2.39 -0.02 2.16 16 5 C 0.47 8.33 7.36 71.24 0.52 8.85 16 6 O -0.53 -13.20 15.26 21.97 0.34 -12.86 16 7 O -0.51 -5.96 13.23 -51.35 -0.68 -6.64 16 8 N -0.98 -19.33 2.30 -520.44 -1.20 -20.53 16 9 C 0.08 1.42 8.80 127.77 1.12 2.55 16 10 S 2.72 71.65 5.64 -56.49 -0.32 71.34 16 11 O -0.97 -29.19 16.36 -128.00 -2.09 -31.29 16 12 O -0.96 -26.92 15.84 -128.00 -2.03 -28.95 16 13 C -0.71 -22.57 5.97 22.27 0.13 -22.44 16 14 C -0.02 -0.74 9.52 22.27 0.21 -0.53 16 15 C -0.16 -6.08 9.70 22.27 0.22 -5.86 16 16 C 0.00 -0.15 5.07 -19.87 -0.10 -0.25 16 17 C 0.05 2.60 5.10 29.10 0.15 2.75 16 18 C -0.53 -30.32 9.09 25.60 0.23 -30.09 16 19 H 0.05 3.07 7.74 -2.91 -0.02 3.05 16 20 C 0.01 0.49 5.46 84.65 0.46 0.95 16 21 N -0.93 -54.97 13.29 21.45 0.28 -54.69 16 22 Si 0.97 44.10 29.54 68.60 2.03 46.12 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 25 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 26 C -0.16 -6.20 9.70 22.27 0.22 -5.99 16 27 C -0.02 -0.66 9.52 22.27 0.21 -0.45 16 28 H 0.08 0.65 8.14 -2.39 -0.02 0.63 16 29 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.04 0.60 7.75 -2.39 -0.02 0.58 16 31 H 0.09 0.73 7.51 -2.39 -0.02 0.71 16 32 H 0.11 0.75 8.00 -2.39 -0.02 0.73 16 33 H 0.43 2.14 9.10 -74.06 -0.67 1.47 16 34 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 35 H 0.07 1.30 7.79 -2.39 -0.02 1.28 16 36 H 0.08 1.38 6.28 -2.39 -0.01 1.36 16 37 H 0.16 4.12 7.61 -2.91 -0.02 4.09 16 38 H 0.13 4.89 8.06 -2.91 -0.02 4.87 16 39 H 0.01 0.71 8.08 -2.39 -0.02 0.69 16 40 H 0.01 0.65 8.09 -2.38 -0.02 0.63 16 41 H 0.27 14.83 8.31 -92.71 -0.77 14.06 16 42 H 0.13 4.96 8.06 -2.91 -0.02 4.94 16 43 H 0.15 4.34 7.62 -2.91 -0.02 4.31 16 Total: -1.00 -75.29 377.08 1.05 -74.24 By element: Atomic # 1 Polarization: 13.04 SS G_CDS: 0.36 Total: 13.40 kcal Atomic # 6 Polarization: -54.50 SS G_CDS: 4.36 Total: -50.14 kcal Atomic # 7 Polarization: -74.30 SS G_CDS: -0.91 Total: -75.21 kcal Atomic # 8 Polarization: -75.28 SS G_CDS: -4.47 Total: -79.74 kcal Atomic # 14 Polarization: 44.10 SS G_CDS: 2.03 Total: 46.12 kcal Atomic # 16 Polarization: 71.65 SS G_CDS: -0.32 Total: 71.34 kcal Total: -75.29 1.05 -74.24 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000887331455.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.417 kcal (2) G-P(sol) polarization free energy of solvation -75.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.708 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -167.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds