Wall clock time and date at job start Sat Apr 11 2020 06:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30107 * 124.94719 * 2 1 4 4 C 1.35785 * 109.64443 * 180.02562 * 3 2 1 5 5 C 1.39741 * 133.60479 * 180.02562 * 4 3 2 6 6 C 1.36596 * 119.88898 * 179.97438 * 5 4 3 7 7 C 1.38781 * 120.66937 * 0.02562 * 6 5 4 8 8 C 1.37855 * 120.44792 * 359.97438 * 7 6 5 9 9 C 1.38837 * 119.69332 * 359.72290 * 8 7 6 10 10 N 1.36028 * 124.95129 * 180.02562 * 2 1 3 11 11 C 1.46501 * 126.34968 * 359.97438 * 10 2 1 12 12 C 1.50703 * 109.47308 * 90.02172 * 11 10 2 13 13 O 1.21279 * 119.99675 * 359.72485 * 12 11 10 14 14 N 1.34767 * 120.00100 * 179.97438 * 12 11 10 15 15 C 1.46502 * 120.00038 * 180.02562 * 14 12 11 16 16 H 1.08990 * 109.47442 * 34.99954 * 15 14 12 17 17 C 1.50705 * 109.47112 * 155.00321 * 15 14 12 18 18 H 1.08000 * 120.00198 * 114.76472 * 17 15 14 19 19 C 1.37874 * 119.99828 * 294.76428 * 17 15 14 20 20 N 1.31511 * 120.00165 * 184.89928 * 19 17 15 21 21 Si 1.86799 * 120.00108 * 4.89410 * 19 17 15 22 22 H 1.48500 * 109.47136 * 84.90728 * 21 19 17 23 23 H 1.48500 * 109.47138 * 204.90963 * 21 19 17 24 24 H 1.48504 * 109.47011 * 324.90802 * 21 19 17 25 25 C 1.53010 * 109.47122 * 274.99796 * 15 14 12 26 26 F 1.39906 * 109.46633 * 65.01785 * 25 15 14 27 27 F 1.39891 * 109.47178 * 185.01711 * 25 15 14 28 28 F 1.39895 * 109.47055 * 305.01740 * 25 15 14 29 29 H 1.09000 * 109.46892 * 269.98034 * 1 2 3 30 30 H 1.09000 * 109.47436 * 29.97518 * 1 2 3 31 31 H 1.08998 * 109.47033 * 149.97761 * 1 2 3 32 32 H 1.08001 * 120.05289 * 359.92592 * 5 4 3 33 33 H 1.08000 * 119.66949 * 180.02562 * 6 5 4 34 34 H 1.07995 * 119.77721 * 179.97438 * 7 6 5 35 35 H 1.08000 * 120.15233 * 180.02562 * 8 7 6 36 36 H 1.08999 * 109.47264 * 330.02227 * 11 10 2 37 37 H 1.08998 * 109.47455 * 210.02400 * 11 10 2 38 38 H 0.97003 * 119.99971 * 0.02562 * 14 12 11 39 39 H 0.96998 * 120.00618 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2523 1.0665 0.0000 4 6 3.5620 0.7081 -0.0006 5 6 4.7587 1.4298 -0.0004 6 6 5.9532 0.7671 -0.0006 7 6 5.9931 -0.6201 -0.0016 8 6 4.8253 -1.3526 -0.0018 9 6 3.6018 -0.6964 0.0048 10 7 2.2863 -1.1149 -0.0005 11 6 1.8166 -2.5026 -0.0006 12 6 1.6556 -2.9784 -1.4214 13 8 1.9034 -2.2302 -2.3432 14 7 1.2313 -4.2336 -1.6678 15 6 1.0752 -4.6963 -3.0490 16 1 1.8491 -4.2480 -3.6720 17 6 1.2015 -6.1974 -3.0933 18 1 0.3534 -6.8025 -3.3775 19 6 2.3999 -6.7981 -2.7710 20 7 2.5395 -8.0992 -2.9020 21 14 3.8255 -5.7639 -2.1483 22 1 3.6910 -5.5669 -0.6826 23 1 5.1052 -6.4588 -2.4391 24 1 3.8134 -4.4438 -2.8284 25 6 -0.3025 -4.2848 -3.5722 26 9 -0.3783 -2.8894 -3.6388 27 9 -0.4968 -4.8239 -4.8483 28 9 -1.2920 -4.7649 -2.7076 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3633 -0.8898 -0.5142 32 1 4.7391 2.5096 -0.0008 33 1 6.8758 1.3284 0.0000 34 1 6.9456 -1.1292 -0.0021 35 1 4.8620 -2.4320 -0.0021 36 1 0.8572 -2.5615 0.5132 37 1 2.5431 -3.1322 0.5132 38 1 1.0292 -4.8307 -0.9305 39 1 3.3825 -8.5219 -2.6750 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928807310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:14 Heat of formation + Delta-G solvation = -115.613611 kcal Electronic energy + Delta-G solvation = -30672.084051 eV Core-core repulsion = 25972.468490 eV Total energy + Delta-G solvation = -4699.615562 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -49.23848 -46.75464 -46.71747 -42.19695 -39.35183 -37.37438 -35.19548 -34.10738 -32.69772 -31.46413 -30.63320 -29.63371 -27.59348 -27.15933 -25.17129 -22.34695 -22.10170 -21.73015 -20.64633 -19.81930 -18.44144 -17.75011 -17.38850 -17.30088 -17.15373 -16.78167 -16.55762 -15.37051 -15.33111 -15.23590 -14.77523 -14.24929 -13.98637 -13.88674 -13.63416 -13.60997 -13.25911 -13.19139 -13.16357 -13.06521 -12.92540 -12.89933 -12.82048 -12.75071 -12.36130 -11.92531 -11.85798 -11.50696 -11.44296 -11.30953 -10.84195 -10.61126 -10.39348 -10.02272 -9.90614 -9.69410 -9.14580 -8.72321 -8.24261 -8.03388 -6.65495 -4.79853 0.98635 1.54691 2.40639 2.67453 2.79641 2.88959 3.09624 3.13918 3.42478 3.73012 3.92992 3.95175 4.14879 4.42109 4.54331 4.66009 4.80776 4.87161 4.93747 5.00624 5.01226 5.04793 5.20582 5.27722 5.34713 5.39950 5.45942 5.61875 5.73507 5.77050 6.14271 6.21819 6.47669 6.52487 6.56004 6.70397 6.82377 6.90302 7.10064 7.66285 7.93010 7.96934 8.35397 8.47062 8.87276 10.42793 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.012821 B = 0.004685 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.396826 B = 5974.474773 C = 7503.528391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.298 3.702 3 N -0.498 5.498 4 C 0.051 3.949 5 C -0.069 4.069 6 C -0.130 4.130 7 C -0.107 4.107 8 C -0.106 4.106 9 C 0.057 3.943 10 N -0.470 5.470 11 C 0.084 3.916 12 C 0.478 3.522 13 O -0.515 6.515 14 N -0.713 5.713 15 C 0.205 3.795 16 H 0.092 0.908 17 C -0.538 4.538 18 H 0.097 0.903 19 C 0.097 3.903 20 N -0.858 5.858 21 Si 0.876 3.124 22 H -0.272 1.272 23 H -0.284 1.284 24 H -0.257 1.257 25 C 0.443 3.557 26 F -0.194 7.194 27 F -0.182 7.182 28 F -0.189 7.189 29 H 0.088 0.912 30 H 0.097 0.903 31 H 0.080 0.920 32 H 0.126 0.874 33 H 0.127 0.873 34 H 0.128 0.872 35 H 0.117 0.883 36 H 0.124 0.876 37 H 0.117 0.883 38 H 0.402 0.598 39 H 0.276 0.724 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.819 10.761 9.255 14.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.033 3.967 3 N -0.218 5.218 4 C -0.067 4.067 5 C -0.088 4.088 6 C -0.150 4.150 7 C -0.127 4.127 8 C -0.127 4.127 9 C -0.052 4.052 10 N -0.160 5.160 11 C -0.043 4.043 12 C 0.261 3.739 13 O -0.390 6.390 14 N -0.368 5.368 15 C 0.102 3.898 16 H 0.110 0.890 17 C -0.576 4.576 18 H 0.115 0.885 19 C -0.113 4.113 20 N -0.490 5.490 21 Si 0.702 3.298 22 H -0.198 1.198 23 H -0.211 1.211 24 H -0.182 1.182 25 C 0.388 3.612 26 F -0.175 7.175 27 F -0.163 7.163 28 F -0.171 7.171 29 H 0.106 0.894 30 H 0.116 0.884 31 H 0.099 0.901 32 H 0.144 0.856 33 H 0.145 0.855 34 H 0.146 0.854 35 H 0.135 0.865 36 H 0.142 0.858 37 H 0.135 0.865 38 H 0.239 0.761 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 0.761 11.841 8.569 14.636 hybrid contribution 0.726 -0.926 0.528 1.289 sum 1.486 10.915 9.097 14.286 Atomic orbital electron populations 1.20398 0.84424 1.05118 1.03819 1.23560 0.95674 0.80418 0.97026 1.70402 1.00849 1.26997 1.23554 1.19002 0.92110 0.90167 1.05420 1.19955 0.89190 0.99534 1.00127 1.20586 0.97336 0.94267 1.02826 1.20830 0.97065 0.94009 1.00805 1.19988 0.89386 0.99432 1.03870 1.18806 0.85087 0.95244 1.06042 1.44716 1.04860 1.06046 1.60345 1.21794 1.03889 0.81305 0.97329 1.20989 0.78611 0.83401 0.90869 1.90769 1.48728 1.54262 1.45232 1.47659 1.66113 1.12303 1.10678 1.20341 0.88744 0.98576 0.82132 0.89002 1.20796 1.00626 0.86339 1.49821 0.88513 1.24918 0.98079 0.94955 0.93359 1.69851 1.26650 1.09415 1.43111 0.86867 0.81640 0.81432 0.79840 1.19764 1.21060 1.18167 1.21403 0.90383 0.73695 0.75736 1.93155 1.97065 1.31030 1.96263 1.93120 1.95967 1.86043 1.41183 1.93083 1.65661 1.88165 1.70204 0.89379 0.88445 0.90115 0.85571 0.85541 0.85435 0.86457 0.85781 0.86467 0.76085 0.91349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.86 9.95 36.01 0.36 -0.50 16 2 C 0.30 4.53 7.85 -154.83 -1.22 3.31 16 3 N -0.50 -8.46 11.27 -8.23 -0.09 -8.55 16 4 C 0.05 0.85 7.23 -84.70 -0.61 0.24 16 5 C -0.07 -0.95 10.05 -39.61 -0.40 -1.35 16 6 C -0.13 -1.55 9.96 -39.97 -0.40 -1.94 16 7 C -0.11 -1.35 10.03 -39.52 -0.40 -1.74 16 8 C -0.11 -1.57 10.05 -39.50 -0.40 -1.97 16 9 C 0.06 0.94 6.87 -83.99 -0.58 0.36 16 10 N -0.47 -7.29 2.29 -112.43 -0.26 -7.54 16 11 C 0.08 1.11 6.21 -5.19 -0.03 1.08 16 12 C 0.48 8.48 7.10 -10.99 -0.08 8.40 16 13 O -0.51 -11.23 14.99 5.56 0.08 -11.14 16 14 N -0.71 -12.93 2.89 -54.93 -0.16 -13.09 16 15 C 0.20 4.40 1.42 -69.07 -0.10 4.31 16 16 H 0.09 2.16 6.53 -51.93 -0.34 1.82 16 17 C -0.54 -13.01 8.65 -34.44 -0.30 -13.31 16 18 H 0.10 2.57 7.95 -52.49 -0.42 2.15 16 19 C 0.10 2.39 5.47 -17.82 -0.10 2.30 16 20 N -0.86 -22.65 13.96 55.43 0.77 -21.87 16 21 Si 0.88 18.93 25.78 -169.99 -4.38 14.55 16 22 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 24 H -0.26 -5.88 6.57 56.52 0.37 -5.51 16 25 C 0.44 9.19 2.79 37.16 0.10 9.29 16 26 F -0.19 -4.00 15.82 2.25 0.04 -3.96 16 27 F -0.18 -3.91 16.86 2.25 0.04 -3.87 16 28 F -0.19 -3.73 16.97 2.25 0.04 -3.69 16 29 H 0.09 0.71 8.14 -51.93 -0.42 0.28 16 30 H 0.10 1.01 8.14 -51.93 -0.42 0.58 16 31 H 0.08 0.87 7.65 -51.93 -0.40 0.48 16 32 H 0.13 1.49 8.06 -52.49 -0.42 1.07 16 33 H 0.13 1.10 8.06 -52.49 -0.42 0.68 16 34 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 35 H 0.12 1.64 8.06 -52.49 -0.42 1.22 16 36 H 0.12 1.16 7.62 -51.93 -0.40 0.77 16 37 H 0.12 1.35 8.14 -51.93 -0.42 0.93 16 38 H 0.40 6.36 8.58 -40.82 -0.35 6.01 16 39 H 0.28 6.81 8.31 -40.82 -0.34 6.47 16 LS Contribution 348.55 15.07 5.25 5.25 Total: -1.00 -31.66 348.55 -6.83 -38.49 By element: Atomic # 1 Polarization: 10.99 SS G_CDS: -4.02 Total: 6.96 kcal Atomic # 6 Polarization: 12.60 SS G_CDS: -4.14 Total: 8.46 kcal Atomic # 7 Polarization: -51.32 SS G_CDS: 0.26 Total: -51.06 kcal Atomic # 8 Polarization: -11.23 SS G_CDS: 0.08 Total: -11.14 kcal Atomic # 9 Polarization: -11.64 SS G_CDS: 0.11 Total: -11.52 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -4.38 Total: 14.55 kcal Total LS contribution 5.25 Total: 5.25 kcal Total: -31.66 -6.83 -38.49 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928807310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.121 kcal (2) G-P(sol) polarization free energy of solvation -31.661 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -115.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds