Wall clock time and date at job start Sat Apr 11 2020 06:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.30107 * 124.94719 * 2 1 4 4 C 1.35785 * 109.64443 * 180.02562 * 3 2 1 5 5 C 1.39741 * 133.60479 * 180.02562 * 4 3 2 6 6 C 1.36596 * 119.88898 * 179.97438 * 5 4 3 7 7 C 1.38781 * 120.66937 * 0.02562 * 6 5 4 8 8 C 1.37855 * 120.44792 * 359.97438 * 7 6 5 9 9 C 1.38837 * 119.69332 * 359.72290 * 8 7 6 10 10 N 1.36028 * 124.95129 * 180.02562 * 2 1 3 11 11 C 1.46501 * 126.34968 * 359.97438 * 10 2 1 12 12 C 1.50703 * 109.47308 * 90.02172 * 11 10 2 13 13 O 1.21279 * 119.99675 * 359.72485 * 12 11 10 14 14 N 1.34767 * 120.00100 * 179.97438 * 12 11 10 15 15 C 1.46502 * 120.00038 * 180.02562 * 14 12 11 16 16 H 1.08990 * 109.47442 * 34.99954 * 15 14 12 17 17 C 1.50705 * 109.47112 * 155.00321 * 15 14 12 18 18 H 1.08000 * 120.00198 * 114.76472 * 17 15 14 19 19 C 1.37874 * 119.99828 * 294.76428 * 17 15 14 20 20 N 1.31511 * 120.00165 * 184.89928 * 19 17 15 21 21 Si 1.86799 * 120.00108 * 4.89410 * 19 17 15 22 22 H 1.48500 * 109.47136 * 84.90728 * 21 19 17 23 23 H 1.48500 * 109.47138 * 204.90963 * 21 19 17 24 24 H 1.48504 * 109.47011 * 324.90802 * 21 19 17 25 25 C 1.53010 * 109.47122 * 274.99796 * 15 14 12 26 26 F 1.39906 * 109.46633 * 65.01785 * 25 15 14 27 27 F 1.39891 * 109.47178 * 185.01711 * 25 15 14 28 28 F 1.39895 * 109.47055 * 305.01740 * 25 15 14 29 29 H 1.09000 * 109.46892 * 269.98034 * 1 2 3 30 30 H 1.09000 * 109.47436 * 29.97518 * 1 2 3 31 31 H 1.08998 * 109.47033 * 149.97761 * 1 2 3 32 32 H 1.08001 * 120.05289 * 359.92592 * 5 4 3 33 33 H 1.08000 * 119.66949 * 180.02562 * 6 5 4 34 34 H 1.07995 * 119.77721 * 179.97438 * 7 6 5 35 35 H 1.08000 * 120.15233 * 180.02562 * 8 7 6 36 36 H 1.08999 * 109.47264 * 330.02227 * 11 10 2 37 37 H 1.08998 * 109.47455 * 210.02400 * 11 10 2 38 38 H 0.97003 * 119.99971 * 0.02562 * 14 12 11 39 39 H 0.96998 * 120.00618 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2523 1.0665 0.0000 4 6 3.5620 0.7081 -0.0006 5 6 4.7587 1.4298 -0.0004 6 6 5.9532 0.7671 -0.0006 7 6 5.9931 -0.6201 -0.0016 8 6 4.8253 -1.3526 -0.0018 9 6 3.6018 -0.6964 0.0048 10 7 2.2863 -1.1149 -0.0005 11 6 1.8166 -2.5026 -0.0006 12 6 1.6556 -2.9784 -1.4214 13 8 1.9034 -2.2302 -2.3432 14 7 1.2313 -4.2336 -1.6678 15 6 1.0752 -4.6963 -3.0490 16 1 1.8491 -4.2480 -3.6720 17 6 1.2015 -6.1974 -3.0933 18 1 0.3534 -6.8025 -3.3775 19 6 2.3999 -6.7981 -2.7710 20 7 2.5395 -8.0992 -2.9020 21 14 3.8255 -5.7639 -2.1483 22 1 3.6910 -5.5669 -0.6826 23 1 5.1052 -6.4588 -2.4391 24 1 3.8134 -4.4438 -2.8284 25 6 -0.3025 -4.2848 -3.5722 26 9 -0.3783 -2.8894 -3.6388 27 9 -0.4968 -4.8239 -4.8483 28 9 -1.2920 -4.7649 -2.7076 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3634 0.8902 -0.5134 31 1 -0.3633 -0.8898 -0.5142 32 1 4.7391 2.5096 -0.0008 33 1 6.8758 1.3284 0.0000 34 1 6.9456 -1.1292 -0.0021 35 1 4.8620 -2.4320 -0.0021 36 1 0.8572 -2.5615 0.5132 37 1 2.5431 -3.1322 0.5132 38 1 1.0292 -4.8307 -0.9305 39 1 3.3825 -8.5219 -2.6750 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928807310.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:14 Heat of formation + Delta-G solvation = -134.692926 kcal Electronic energy + Delta-G solvation = -30672.911392 eV Core-core repulsion = 25972.468490 eV Total energy + Delta-G solvation = -4700.442903 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -50.93699 -48.45279 -48.41028 -43.26576 -40.81630 -38.38385 -36.84337 -35.26735 -34.51476 -32.41930 -31.82789 -31.05246 -28.63343 -28.30139 -26.99829 -23.68290 -23.15079 -23.04014 -22.07909 -21.03029 -20.11211 -19.42126 -18.83618 -18.57750 -18.39020 -18.31716 -18.11325 -16.84414 -16.51234 -16.33488 -16.15840 -15.73334 -15.32731 -15.30393 -15.03073 -14.96330 -14.88736 -14.82204 -14.61843 -14.56898 -14.52160 -14.26192 -13.93765 -13.82948 -13.57046 -13.28232 -12.97614 -12.82469 -12.60134 -12.50758 -12.42748 -12.18159 -11.92003 -11.79864 -11.20164 -11.01563 -10.90765 -10.31391 -9.29479 -9.09742 -8.56273 -6.75130 -0.04631 0.50454 1.15965 1.22757 1.32730 1.36763 1.44375 1.72603 1.95371 2.11930 2.15465 2.87149 2.90928 3.09417 3.17796 3.29514 3.36913 3.42064 3.61664 3.72414 3.95584 4.02656 4.11839 4.34009 4.40591 4.45462 4.48176 4.61872 4.64811 4.84724 4.90596 4.93824 5.16406 5.23192 5.44162 5.53462 5.54332 5.82746 5.93524 6.05820 6.39394 6.47778 6.84091 6.95379 7.05401 8.56003 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.012821 B = 0.004685 C = 0.003731 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2183.396826 B = 5974.474773 C = 7503.528391 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.289 3.711 3 N -0.530 5.530 4 C 0.018 3.982 5 C -0.084 4.084 6 C -0.121 4.121 7 C -0.103 4.103 8 C -0.128 4.128 9 C 0.031 3.969 10 N -0.477 5.477 11 C 0.088 3.912 12 C 0.480 3.520 13 O -0.557 6.557 14 N -0.707 5.707 15 C 0.216 3.784 16 H 0.071 0.929 17 C -0.541 4.541 18 H 0.065 0.935 19 C 0.060 3.940 20 N -0.901 5.901 21 Si 0.928 3.072 22 H -0.231 1.231 23 H -0.290 1.290 24 H -0.277 1.277 25 C 0.447 3.553 26 F -0.191 7.191 27 F -0.188 7.188 28 F -0.181 7.181 29 H 0.120 0.880 30 H 0.098 0.902 31 H 0.082 0.918 32 H 0.139 0.861 33 H 0.163 0.837 34 H 0.158 0.842 35 H 0.123 0.877 36 H 0.169 0.831 37 H 0.142 0.858 38 H 0.418 0.582 39 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.676 11.729 11.348 16.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.024 3.976 3 N -0.251 5.251 4 C -0.099 4.099 5 C -0.103 4.103 6 C -0.141 4.141 7 C -0.123 4.123 8 C -0.149 4.149 9 C -0.077 4.077 10 N -0.167 5.167 11 C -0.037 4.037 12 C 0.266 3.734 13 O -0.435 6.435 14 N -0.363 5.363 15 C 0.111 3.889 16 H 0.089 0.911 17 C -0.579 4.579 18 H 0.083 0.917 19 C -0.146 4.146 20 N -0.536 5.536 21 Si 0.753 3.247 22 H -0.154 1.154 23 H -0.217 1.217 24 H -0.203 1.203 25 C 0.391 3.609 26 F -0.172 7.172 27 F -0.170 7.170 28 F -0.162 7.162 29 H 0.138 0.862 30 H 0.116 0.884 31 H 0.101 0.899 32 H 0.157 0.843 33 H 0.180 0.820 34 H 0.176 0.824 35 H 0.141 0.859 36 H 0.187 0.813 37 H 0.160 0.840 38 H 0.257 0.743 39 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 1.605 12.802 10.712 16.769 hybrid contribution 0.451 -1.153 -0.193 1.254 sum 2.056 11.648 10.519 15.829 Atomic orbital electron populations 1.20569 0.81828 1.05191 1.05916 1.24304 0.97125 0.80165 0.95989 1.70364 1.01469 1.28238 1.24984 1.19500 0.92782 0.91040 1.06616 1.20312 0.89210 1.00418 1.00405 1.21016 0.98005 0.94387 1.00724 1.21287 0.97662 0.94440 0.98885 1.20275 0.89664 1.00001 1.04975 1.19169 0.86022 0.95556 1.06945 1.44849 1.04666 1.06639 1.60496 1.21983 1.07010 0.80732 0.94005 1.21678 0.76916 0.82252 0.92573 1.90761 1.50304 1.55232 1.47197 1.47133 1.66402 1.13222 1.09526 1.19852 0.88652 0.96734 0.83662 0.91090 1.20703 0.99766 0.87415 1.49978 0.91675 1.25504 1.00083 0.95591 0.93386 1.69941 1.27593 1.11015 1.45029 0.86052 0.78538 0.78543 0.81590 1.15422 1.21688 1.20295 1.21253 0.90308 0.73749 0.75569 1.93163 1.97051 1.30783 1.96245 1.93106 1.95996 1.86183 1.41725 1.93097 1.65227 1.88077 1.69838 0.86164 0.88367 0.89937 0.84346 0.81974 0.82416 0.85940 0.81324 0.84003 0.74311 0.91040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.50 9.95 71.24 0.71 -0.79 16 2 C 0.29 8.39 7.85 137.93 1.08 9.48 16 3 N -0.53 -17.79 11.27 -179.97 -2.03 -19.82 16 4 C 0.02 0.59 7.23 39.45 0.29 0.87 16 5 C -0.08 -2.22 10.05 22.25 0.22 -2.00 16 6 C -0.12 -2.56 9.96 22.02 0.22 -2.35 16 7 C -0.10 -2.30 10.03 22.31 0.22 -2.08 16 8 C -0.13 -3.56 10.05 22.32 0.22 -3.33 16 9 C 0.03 0.99 6.87 38.86 0.27 1.26 16 10 N -0.48 -13.87 2.29 -509.63 -1.17 -15.03 16 11 C 0.09 2.06 6.21 85.63 0.53 2.59 16 12 C 0.48 16.02 7.10 87.66 0.62 16.65 16 13 O -0.56 -23.86 14.99 -3.03 -0.05 -23.90 16 14 N -0.71 -24.32 2.89 -446.09 -1.29 -25.61 16 15 C 0.22 9.21 1.42 44.25 0.06 9.28 16 16 H 0.07 3.37 6.53 -2.39 -0.02 3.36 16 17 C -0.54 -26.39 8.65 25.60 0.22 -26.17 16 18 H 0.07 3.55 7.95 -2.91 -0.02 3.53 16 19 C 0.06 2.98 5.47 84.65 0.46 3.45 16 20 N -0.90 -48.08 13.96 21.45 0.30 -47.78 16 21 Si 0.93 38.24 25.78 68.60 1.77 40.00 16 22 H -0.23 -7.93 7.11 99.48 0.71 -7.22 16 23 H -0.29 -12.21 7.11 99.48 0.71 -11.51 16 24 H -0.28 -12.35 6.57 99.48 0.65 -11.70 16 25 C 0.45 18.37 2.79 71.99 0.20 18.57 16 26 F -0.19 -7.77 15.82 44.97 0.71 -7.05 16 27 F -0.19 -8.18 16.86 44.97 0.76 -7.42 16 28 F -0.18 -6.94 16.97 44.97 0.76 -6.18 16 29 H 0.12 1.54 8.14 -2.39 -0.02 1.52 16 30 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.08 1.57 7.65 -2.39 -0.02 1.56 16 32 H 0.14 3.13 8.06 -2.91 -0.02 3.10 16 33 H 0.16 2.18 8.06 -2.91 -0.02 2.16 16 34 H 0.16 2.46 8.06 -2.91 -0.02 2.44 16 35 H 0.12 3.13 8.06 -2.91 -0.02 3.11 16 36 H 0.17 2.39 7.62 -2.39 -0.02 2.37 16 37 H 0.14 2.66 8.14 -2.39 -0.02 2.64 16 38 H 0.42 12.04 8.58 -92.71 -0.80 11.24 16 39 H 0.28 13.88 8.31 -92.71 -0.77 13.11 16 Total: -1.00 -71.17 348.55 5.38 -65.78 By element: Atomic # 1 Polarization: 21.30 SS G_CDS: 0.27 Total: 21.57 kcal Atomic # 6 Polarization: 20.09 SS G_CDS: 5.34 Total: 25.43 kcal Atomic # 7 Polarization: -104.05 SS G_CDS: -4.19 Total: -108.23 kcal Atomic # 8 Polarization: -23.86 SS G_CDS: -0.05 Total: -23.90 kcal Atomic # 9 Polarization: -22.88 SS G_CDS: 2.23 Total: -20.65 kcal Atomic # 14 Polarization: 38.24 SS G_CDS: 1.77 Total: 40.00 kcal Total: -71.17 5.38 -65.78 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928807310.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -68.909 kcal (2) G-P(sol) polarization free energy of solvation -71.167 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.383 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.784 kcal (6) G-S(sol) free energy of system = (1) + (5) -134.693 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds