Wall clock time and date at job start Sat Apr 11 2020 06:15:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86797 * 120.00471 * 2 1 4 4 H 1.48499 * 109.47289 * 269.99805 * 3 2 1 5 5 H 1.48499 * 109.47315 * 29.99974 * 3 2 1 6 6 H 1.48501 * 109.47206 * 150.00110 * 3 2 1 7 7 C 1.37882 * 119.99666 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00154 * 0.02562 * 7 2 1 9 9 C 1.50707 * 120.00057 * 179.97438 * 7 2 1 10 10 C 1.52997 * 109.47061 * 180.02562 * 9 7 2 11 11 C 1.52997 * 109.47130 * 180.02562 * 10 9 7 12 12 N 1.46501 * 109.47367 * 180.02562 * 11 10 9 13 13 C 1.37994 * 120.00039 * 180.02562 * 12 11 10 14 14 N 1.32866 * 120.04770 * 0.02562 * 13 12 11 15 15 C 1.32840 * 119.82926 * 179.97438 * 14 13 12 16 16 N 1.37999 * 120.04327 * 180.02562 * 15 14 13 17 17 N 1.33121 * 119.91050 * 359.75597 * 15 14 13 18 18 C 1.32146 * 120.08637 * 0.50492 * 17 15 14 19 19 C 1.50697 * 119.91241 * 179.77207 * 18 17 15 20 20 F 1.39900 * 109.47126 * 239.72145 * 19 18 17 21 21 F 1.39895 * 109.47486 * 119.71841 * 19 18 17 22 22 C 1.53006 * 109.47239 * 359.71781 * 19 18 17 23 23 F 1.39900 * 109.46764 * 60.00143 * 22 19 18 24 24 F 1.39897 * 109.47129 * 180.02562 * 22 19 18 25 25 F 1.39903 * 109.46814 * 300.00614 * 22 19 18 26 26 N 1.32164 * 120.17488 * 359.48699 * 18 17 15 27 27 H 0.97002 * 119.99170 * 359.97438 * 1 2 3 28 28 H 1.08994 * 109.46706 * 60.00216 * 9 7 2 29 29 H 1.08998 * 109.46807 * 300.00524 * 9 7 2 30 30 H 1.08998 * 109.47307 * 59.99830 * 10 9 7 31 31 H 1.09001 * 109.47120 * 300.00185 * 10 9 7 32 32 H 1.08998 * 109.47540 * 59.99513 * 11 10 9 33 33 H 1.09006 * 109.46815 * 299.99377 * 11 10 9 34 34 H 0.97004 * 119.99829 * 359.97438 * 12 11 10 35 35 H 0.96995 * 119.99598 * 0.02562 * 16 15 14 36 36 H 0.96994 * 119.99431 * 180.02562 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4969 2.0463 -1.4000 5 1 1.4468 2.6527 0.7000 6 1 3.5468 1.4400 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 1.4644 -2.1294 0.0005 9 6 3.5116 -1.1942 0.0000 10 6 4.0214 -2.6367 0.0001 11 6 5.5514 -2.6369 0.0001 12 7 6.0397 -4.0181 -0.0004 13 6 7.3964 -4.2703 0.0001 14 7 8.2607 -3.2612 0.0016 15 6 9.5657 -3.5090 0.0025 16 7 10.4673 -2.4642 0.0046 17 7 10.0027 -4.7664 0.0070 18 6 9.1401 -5.7675 0.0004 19 6 9.6390 -7.1894 0.0002 20 9 9.1721 -7.8474 -1.1427 21 9 9.1703 -7.8483 1.1419 22 6 11.1691 -7.1931 0.0014 23 9 11.6361 -6.5351 1.1443 24 9 11.6323 -8.5132 0.0007 25 9 11.6378 -6.5342 -1.1403 26 7 7.8409 -5.5249 -0.0005 27 1 -0.4849 0.8401 0.0004 28 1 3.8752 -0.6799 0.8894 29 1 3.8745 -0.6809 -0.8905 30 1 3.6577 -3.1508 -0.8896 31 1 3.6584 -3.1504 0.8903 32 1 5.9148 -2.1229 0.8900 33 1 5.9148 -2.1232 -0.8900 34 1 5.4093 -4.7554 -0.0003 35 1 10.1482 -1.5483 0.0056 36 1 11.4201 -2.6459 0.0049 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001185299569.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:38 Heat of formation + Delta-G solvation = -166.794107 kcal Electronic energy + Delta-G solvation = -29652.774385 eV Core-core repulsion = 24429.002692 eV Total energy + Delta-G solvation = -5223.771693 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.097 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -51.02859 -49.68037 -48.58482 -48.23717 -47.63042 -41.90163 -37.42255 -36.14814 -34.54464 -32.97307 -32.14295 -31.25496 -30.53613 -27.43965 -25.68650 -23.98334 -23.31081 -22.38332 -20.65015 -19.95731 -19.67218 -19.50096 -18.75441 -18.41231 -17.84763 -17.30973 -16.75349 -16.41752 -16.18045 -15.87393 -15.44419 -15.00558 -14.97040 -14.91856 -14.84110 -14.75319 -14.54629 -14.53635 -14.31969 -14.26590 -14.21808 -14.05122 -13.62848 -13.03236 -12.77397 -12.34441 -12.15892 -12.03361 -11.58898 -11.21492 -10.92144 -10.21474 -10.11967 -9.97919 -9.86668 -9.79956 -9.41220 -9.30869 -8.71846 -8.61934 -6.12144 -4.11525 0.38477 1.01574 1.18789 1.98184 2.49932 2.62548 2.71503 3.03808 3.14890 3.25034 3.33104 3.35168 3.52824 3.73847 4.02474 4.09431 4.23440 4.37757 5.21331 5.22017 5.35163 5.47848 5.81395 5.90444 6.07398 6.27717 6.29840 6.58196 6.64678 6.75696 7.08197 7.12580 7.25422 7.34195 7.68372 8.11886 8.43651 8.91757 9.49311 11.01087 Molecular weight = 341.10amu Principal moments of inertia in cm(-1) A = 0.025148 B = 0.002259 C = 0.002129 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1113.141302 B =12390.070591 C =13148.160655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.067 3.933 3 Si 0.881 3.119 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.265 1.265 7 C -0.524 4.524 8 H 0.072 0.928 9 C -0.008 4.008 10 C -0.116 4.116 11 C 0.125 3.875 12 N -0.664 5.664 13 C 0.636 3.364 14 N -0.628 5.628 15 C 0.644 3.356 16 N -0.798 5.798 17 N -0.620 5.620 18 C 0.368 3.632 19 C 0.350 3.650 20 F -0.141 7.141 21 F -0.141 7.141 22 C 0.451 3.549 23 F -0.145 7.145 24 F -0.161 7.161 25 F -0.146 7.146 26 N -0.599 5.599 27 H 0.264 0.736 28 H 0.019 0.981 29 H 0.015 0.985 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.071 0.929 34 H 0.421 0.579 35 H 0.422 0.578 36 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.786 -12.386 0.020 29.511 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.135 4.135 3 Si 0.708 3.292 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.189 1.189 7 C -0.562 4.562 8 H 0.091 0.909 9 C -0.046 4.046 10 C -0.154 4.154 11 C 0.003 3.997 12 N -0.298 5.298 13 C 0.271 3.729 14 N -0.369 5.369 15 C 0.276 3.724 16 N -0.348 5.348 17 N -0.357 5.357 18 C 0.083 3.917 19 C 0.309 3.691 20 F -0.122 7.122 21 F -0.122 7.122 22 C 0.394 3.606 23 F -0.126 7.126 24 F -0.142 7.142 25 F -0.127 7.127 26 N -0.334 5.334 27 H 0.074 0.926 28 H 0.038 0.962 29 H 0.033 0.967 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.089 0.911 34 H 0.260 0.740 35 H 0.254 0.746 36 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges 26.450 -11.997 0.028 29.044 hybrid contribution 0.368 0.781 -0.023 0.863 sum 26.819 -11.216 0.005 29.070 Atomic orbital electron populations 1.69912 1.06332 1.27013 1.50728 1.25035 0.94756 0.99242 0.94444 0.86767 0.80351 0.83552 0.78548 1.20249 1.21348 1.18935 1.21078 0.89208 0.94586 1.51338 0.90943 1.19478 0.97395 0.91042 0.96685 1.21761 0.90018 1.01427 1.02214 1.21856 0.96335 0.79028 1.02529 1.44683 1.00171 1.11112 1.73846 1.18948 0.87632 0.82749 0.83577 1.68119 1.01548 1.35558 1.31701 1.18758 0.85266 0.85276 0.83078 1.41702 1.07705 1.05976 1.79372 1.68020 1.39025 0.99293 1.29374 1.21720 0.86322 0.92947 0.90751 1.19488 0.89118 0.85050 0.75443 1.93228 1.89210 1.81194 1.48558 1.93226 1.89152 1.81151 1.48661 1.20120 0.89025 0.75101 0.76347 1.93299 1.89307 1.80651 1.49377 1.93295 1.89926 1.34802 1.96199 1.93299 1.89255 1.80622 1.49490 1.68098 1.15310 1.22772 1.27173 0.92628 0.96247 0.96692 0.91786 0.91771 0.91096 0.91108 0.74006 0.74563 0.74794 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.18 13.96 55.43 0.77 -26.40 16 2 C 0.07 1.89 5.47 -17.82 -0.10 1.79 16 3 Si 0.88 20.94 27.47 -169.99 -4.67 16.27 16 4 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.26 -5.97 6.54 56.52 0.37 -5.61 16 7 C -0.52 -14.29 9.66 -34.44 -0.33 -14.63 16 8 H 0.07 2.13 7.99 -52.49 -0.42 1.71 16 9 C -0.01 -0.18 4.04 -27.88 -0.11 -0.29 16 10 C -0.12 -2.01 5.27 -26.73 -0.14 -2.15 16 11 C 0.13 1.82 5.68 -4.04 -0.02 1.80 16 12 N -0.66 -8.89 5.69 -62.18 -0.35 -9.24 16 13 C 0.64 9.05 8.48 -322.14 -2.73 6.32 16 14 N -0.63 -8.51 9.75 -14.75 -0.14 -8.66 16 15 C 0.64 7.52 8.76 -322.14 -2.82 4.70 16 16 N -0.80 -5.74 9.05 29.85 0.27 -5.47 16 17 N -0.62 -7.47 7.93 -11.52 -0.09 -7.56 16 18 C 0.37 4.77 6.79 -156.58 -1.06 3.70 16 19 C 0.35 3.94 1.82 -27.88 -0.05 3.89 16 20 F -0.14 -1.59 17.01 2.25 0.04 -1.55 16 21 F -0.14 -1.59 17.01 2.25 0.04 -1.55 16 22 C 0.45 4.47 2.37 37.16 0.09 4.56 16 23 F -0.15 -1.45 16.25 2.25 0.04 -1.42 16 24 F -0.16 -1.49 17.28 2.25 0.04 -1.45 16 25 F -0.15 -1.46 16.26 2.25 0.04 -1.42 16 26 N -0.60 -8.45 10.46 -11.52 -0.12 -8.57 16 27 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 28 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 29 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 30 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 31 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 33 H 0.07 1.04 8.14 -51.93 -0.42 0.62 16 34 H 0.42 5.08 8.59 -40.82 -0.35 4.73 16 35 H 0.42 2.40 8.95 -40.82 -0.37 2.04 16 36 H 0.42 2.09 8.95 -40.82 -0.37 1.72 16 LS Contribution 337.32 15.07 5.08 5.08 Total: -1.00 -31.00 337.32 -9.47 -40.47 By element: Atomic # 1 Polarization: 4.91 SS G_CDS: -3.13 Total: 1.78 kcal Atomic # 6 Polarization: 16.98 SS G_CDS: -7.28 Total: 9.69 kcal Atomic # 7 Polarization: -66.24 SS G_CDS: 0.33 Total: -65.91 kcal Atomic # 9 Polarization: -7.58 SS G_CDS: 0.19 Total: -7.39 kcal Atomic # 14 Polarization: 20.94 SS G_CDS: -4.67 Total: 16.27 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -31.00 -9.47 -40.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001185299569.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.322 kcal (2) G-P(sol) polarization free energy of solvation -30.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.321 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.472 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds