Wall clock time and date at job start Sat Apr 11 2020 06:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36932 * 119.99686 * 2 1 4 4 H 1.08003 * 119.99960 * 204.14600 * 3 2 1 5 5 C 1.38812 * 120.00507 * 24.14832 * 3 2 1 6 6 N 1.31625 * 119.99485 * 10.75010 * 5 3 2 7 7 Si 1.86803 * 120.00329 * 190.75567 * 5 3 2 8 8 H 1.48505 * 109.46917 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.47152 * 119.99367 * 7 5 3 10 10 H 1.48497 * 109.46922 * 239.99854 * 7 5 3 11 11 S 1.65602 * 120.00067 * 179.97438 * 2 1 3 12 12 O 1.42099 * 106.40022 * 336.46052 * 11 2 1 13 13 O 1.42097 * 106.40243 * 203.54012 * 11 2 1 14 14 C 1.76195 * 107.21528 * 90.00072 * 11 2 1 15 15 C 1.38270 * 119.94484 * 90.00612 * 14 11 2 16 16 C 1.38146 * 120.05606 * 180.02562 * 15 14 11 17 17 C 1.38730 * 119.94374 * 359.97438 * 16 15 14 18 18 O 1.35925 * 120.05494 * 180.02562 * 17 16 15 19 19 C 1.34267 * 116.99415 * 77.19820 * 18 17 16 20 20 O 1.20818 * 120.00485 * 355.08627 * 19 18 17 21 21 C 1.50703 * 119.99318 * 175.09128 * 19 18 17 22 22 C 1.53002 * 109.46898 * 179.97438 * 21 19 18 23 23 C 1.52994 * 109.47473 * 299.99468 * 21 19 18 24 24 C 1.53002 * 109.47611 * 60.00082 * 21 19 18 25 25 C 1.38739 * 119.89064 * 0.28722 * 17 16 15 26 26 C 1.38141 * 119.93824 * 359.45909 * 25 17 16 27 27 H 1.08999 * 109.47245 * 274.85020 * 1 2 3 28 28 H 1.08997 * 109.47182 * 34.85196 * 1 2 3 29 29 H 1.09004 * 109.47186 * 154.85031 * 1 2 3 30 30 H 0.97003 * 119.99330 * 180.02562 * 6 5 3 31 31 H 1.07999 * 119.97142 * 359.97114 * 15 14 11 32 32 H 1.08000 * 120.02698 * 179.97438 * 16 15 14 33 33 H 1.09009 * 109.46852 * 59.99910 * 22 21 19 34 34 H 1.08992 * 109.47572 * 179.97438 * 22 21 19 35 35 H 1.08995 * 109.47290 * 299.99920 * 22 21 19 36 36 H 1.09004 * 109.47046 * 60.00063 * 23 21 19 37 37 H 1.08996 * 109.47864 * 180.02562 * 23 21 19 38 38 H 1.09002 * 109.47478 * 300.01017 * 23 21 19 39 39 H 1.09004 * 109.46837 * 59.99200 * 24 21 19 40 40 H 1.08992 * 109.47122 * 179.97438 * 24 21 19 41 41 H 1.09004 * 109.46465 * 299.99666 * 24 21 19 42 42 H 1.07993 * 120.02568 * 179.72378 * 25 17 16 43 43 H 1.08001 * 119.96802 * 180.23484 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1588 1.2269 -0.3826 5 6 1.5467 2.3355 0.4918 6 7 0.4087 2.2525 1.1480 7 14 2.3502 4.0002 0.2221 8 1 3.6134 3.8227 -0.5383 9 1 1.4287 4.8760 -0.5454 10 1 2.6475 4.6249 1.5360 11 16 2.2930 -1.4341 0.0006 12 8 1.4114 -2.4062 0.5455 13 8 3.5759 -1.1565 0.5449 14 6 2.5538 -1.8865 -1.6822 15 6 3.6936 -1.4647 -2.3416 16 6 3.9001 -1.8176 -3.6611 17 6 2.9630 -2.5963 -4.3245 18 8 3.1642 -2.9452 -5.6227 19 6 4.0410 -3.9342 -5.8591 20 8 4.6755 -4.4098 -4.9476 21 6 4.2339 -4.4507 -7.2616 22 6 5.2808 -5.5664 -7.2547 23 6 2.9070 -4.9992 -7.7902 24 6 4.7103 -3.3107 -8.1641 25 6 1.8175 -3.0137 -3.6623 26 6 1.6183 -2.6625 -2.3412 27 1 -0.3634 0.0869 1.0240 28 1 -0.3633 0.8433 -0.5872 29 1 -0.3634 -0.9303 -0.4368 30 1 -0.0127 3.0559 1.4914 31 1 4.4226 -0.8582 -1.8248 32 1 4.7904 -1.4876 -4.1759 33 1 4.9418 -6.3787 -6.6116 34 1 5.4201 -5.9404 -8.2689 35 1 6.2261 -5.1754 -6.8784 36 1 2.1614 -4.2040 -7.7952 37 1 3.0465 -5.3732 -8.8044 38 1 2.5676 -5.8113 -7.1472 39 1 5.6556 -2.9200 -7.7875 40 1 4.8502 -3.6845 -9.1784 41 1 3.9646 -2.5156 -8.1691 42 1 1.0845 -3.6161 -4.1780 43 1 0.7286 -2.9903 -1.8242 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001187446329.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:53 Heat of formation + Delta-G solvation = -116.910107 kcal Electronic energy + Delta-G solvation = -27878.689379 eV Core-core repulsion = 23824.025538 eV Total energy + Delta-G solvation = -4054.663841 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 1.92 seconds Orbital eigenvalues (eV) -41.66645 -39.02781 -37.18018 -36.31922 -36.18256 -35.44980 -34.88332 -31.14489 -31.06985 -30.44740 -27.83908 -27.72201 -26.26568 -25.16726 -23.44183 -22.95304 -22.41895 -20.15126 -18.72728 -18.29775 -17.74284 -17.10141 -16.79032 -16.66334 -16.33826 -15.24953 -15.05614 -14.54650 -14.44280 -14.38677 -14.32909 -13.92776 -13.51178 -13.22153 -13.16313 -12.97173 -12.72080 -12.66695 -12.52042 -12.30223 -12.16705 -12.08876 -11.83957 -11.49553 -11.45774 -11.25722 -11.19913 -11.17750 -10.92803 -10.80594 -10.71360 -10.59493 -10.34662 -10.29974 -10.00794 -9.14845 -9.00984 -8.98102 -7.91861 -6.11889 -3.85871 0.67794 1.34584 1.38625 1.82792 2.41637 3.23769 3.31690 3.35070 3.51324 4.09511 4.12163 4.27997 4.31202 4.44520 4.64127 4.67017 4.72741 4.86083 5.10442 5.11595 5.14298 5.21733 5.27438 5.32394 5.35530 5.36421 5.38444 5.52590 5.66877 5.68889 5.73179 5.81110 5.89368 5.97558 6.19742 6.25391 6.30775 6.32394 6.80944 6.90754 7.20037 7.52163 7.56370 7.68403 8.48230 9.03983 9.41127 10.91935 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018309 B = 0.002942 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.965870 B = 9516.175966 C =10121.277003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.136 3.864 2 N -0.851 5.851 3 C -0.317 4.317 4 H 0.097 0.903 5 C 0.040 3.960 6 N -0.886 5.886 7 Si 0.917 3.083 8 H -0.270 1.270 9 H -0.283 1.283 10 H -0.282 1.282 11 S 2.674 3.326 12 O -0.981 6.981 13 O -0.961 6.961 14 C -0.661 4.661 15 C 0.000 4.000 16 C -0.143 4.143 17 C 0.120 3.880 18 O -0.293 6.293 19 C 0.464 3.536 20 O -0.483 6.483 21 C -0.053 4.053 22 C -0.135 4.135 23 C -0.144 4.144 24 C -0.144 4.144 25 C -0.144 4.144 26 C -0.010 4.010 27 H 0.063 0.937 28 H 0.062 0.938 29 H 0.023 0.977 30 H 0.263 0.737 31 H 0.148 0.852 32 H 0.132 0.868 33 H 0.066 0.934 34 H 0.072 0.928 35 H 0.066 0.934 36 H 0.072 0.928 37 H 0.075 0.925 38 H 0.062 0.938 39 H 0.063 0.937 40 H 0.074 0.926 41 H 0.072 0.928 42 H 0.135 0.865 43 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.707 -11.143 -19.378 22.659 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.011 4.011 2 N -0.686 5.686 3 C -0.447 4.447 4 H 0.114 0.886 5 C -0.165 4.165 6 N -0.526 5.526 7 Si 0.744 3.256 8 H -0.194 1.194 9 H -0.209 1.209 10 H -0.208 1.208 11 S 2.761 3.239 12 O -0.971 6.971 13 O -0.951 6.951 14 C -0.743 4.743 15 C -0.019 4.019 16 C -0.162 4.162 17 C 0.079 3.921 18 O -0.208 6.208 19 C 0.307 3.693 20 O -0.367 6.367 21 C -0.054 4.054 22 C -0.192 4.192 23 C -0.201 4.201 24 C -0.202 4.202 25 C -0.163 4.163 26 C -0.029 4.029 27 H 0.082 0.918 28 H 0.081 0.919 29 H 0.041 0.959 30 H 0.073 0.927 31 H 0.166 0.834 32 H 0.150 0.850 33 H 0.085 0.915 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.091 0.909 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.093 0.907 41 H 0.091 0.909 42 H 0.153 0.847 43 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges 4.074 -11.676 -18.312 22.096 hybrid contribution 0.252 1.098 -0.866 1.421 sum 4.326 -10.578 -19.178 22.325 Atomic orbital electron populations 1.21140 0.79574 0.97780 1.02570 1.52635 1.12818 1.17832 1.85302 1.19138 0.99537 0.84935 1.41092 0.88575 1.25150 0.96598 0.99195 0.95511 1.70067 1.18092 1.28693 1.35756 0.86031 0.79064 0.82373 0.78084 1.19440 1.20898 1.20825 1.02351 0.73749 0.73341 0.74422 1.93486 1.66298 1.61329 1.76017 1.93488 1.41331 1.84747 1.75584 1.31929 1.02552 1.10300 1.29561 1.20845 0.94652 0.93503 0.92910 1.21336 0.99389 1.00109 0.95412 1.18708 0.95218 0.96239 0.81939 1.84576 1.59194 1.50704 1.26373 1.24209 0.76247 0.76392 0.92431 1.90724 1.44137 1.55444 1.46370 1.20603 0.99141 0.97546 0.88143 1.21809 0.97835 0.96886 1.02695 1.21914 0.94520 1.01854 1.01861 1.21916 1.02176 0.96961 0.99111 1.21162 0.98042 1.02292 0.94792 1.20817 0.97197 0.91924 0.92957 0.91843 0.91888 0.95880 0.92664 0.83390 0.85022 0.91517 0.90879 0.91486 0.90910 0.90628 0.91862 0.91841 0.90665 0.90904 0.84674 0.83546 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 57. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 3.13 8.59 59.85 0.51 3.64 16 2 N -0.85 -20.81 3.30 -66.69 -0.22 -21.03 16 3 C -0.32 -8.31 9.15 -15.06 -0.14 -8.44 16 4 H 0.10 2.43 7.70 -52.48 -0.40 2.03 16 5 C 0.04 1.05 5.14 -17.43 -0.09 0.96 16 6 N -0.89 -24.00 10.66 55.49 0.59 -23.41 16 7 Si 0.92 20.48 29.57 -169.99 -5.03 15.46 16 8 H -0.27 -5.87 7.11 56.52 0.40 -5.47 16 9 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 10 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 11 S 2.67 59.89 5.60 -107.50 -0.60 59.29 16 12 O -0.98 -22.82 16.25 -57.17 -0.93 -23.75 16 13 O -0.96 -23.74 16.39 -57.17 -0.94 -24.67 16 14 C -0.66 -12.54 5.97 -39.56 -0.24 -12.78 16 15 C 0.00 0.00 9.52 -39.60 -0.38 -0.38 16 16 C -0.14 -2.29 9.58 -39.43 -0.38 -2.66 16 17 C 0.12 1.84 5.13 -39.21 -0.20 1.64 16 18 O -0.29 -3.85 9.83 -23.63 -0.23 -4.08 16 19 C 0.46 5.71 6.43 36.01 0.23 5.94 16 20 O -0.48 -7.50 15.48 -18.74 -0.29 -7.79 16 21 C -0.05 -0.43 0.96 -155.66 -0.15 -0.58 16 22 C -0.14 -0.98 7.76 37.16 0.29 -0.69 16 23 C -0.14 -0.90 8.41 37.15 0.31 -0.59 16 24 C -0.14 -0.92 8.40 37.16 0.31 -0.61 16 25 C -0.14 -2.14 9.99 -39.43 -0.39 -2.54 16 26 C -0.01 -0.16 9.51 -39.61 -0.38 -0.54 16 27 H 0.06 1.57 7.34 -51.93 -0.38 1.19 16 28 H 0.06 1.48 7.34 -51.93 -0.38 1.10 16 29 H 0.02 0.45 7.62 -51.93 -0.40 0.05 16 30 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 31 H 0.15 2.52 7.61 -52.49 -0.40 2.12 16 32 H 0.13 1.80 8.06 -52.49 -0.42 1.38 16 33 H 0.07 0.54 8.10 -51.92 -0.42 0.12 16 34 H 0.07 0.35 8.14 -51.93 -0.42 -0.07 16 35 H 0.07 0.54 8.10 -51.93 -0.42 0.12 16 36 H 0.07 0.47 8.11 -51.93 -0.42 0.05 16 37 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 39 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 41 H 0.07 0.48 8.11 -51.93 -0.42 0.06 16 42 H 0.14 1.59 8.06 -52.49 -0.42 1.16 16 43 H 0.15 2.20 7.61 -52.49 -0.40 1.80 16 LS Contribution 375.73 15.07 5.66 5.66 Total: -1.00 -33.06 375.73 -8.80 -41.86 By element: Atomic # 1 Polarization: 6.22 SS G_CDS: -6.14 Total: 0.08 kcal Atomic # 6 Polarization: -16.94 SS G_CDS: -0.68 Total: -17.62 kcal Atomic # 7 Polarization: -44.81 SS G_CDS: 0.37 Total: -44.43 kcal Atomic # 8 Polarization: -57.91 SS G_CDS: -2.39 Total: -60.29 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.03 Total: 15.46 kcal Atomic # 16 Polarization: 59.89 SS G_CDS: -0.60 Total: 59.29 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.06 -8.80 -41.86 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187446329.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.052 kcal (2) G-P(sol) polarization free energy of solvation -33.055 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.107 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.803 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.858 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.910 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.92 seconds