Wall clock time and date at job start Sat Apr 11 2020 06:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36932 * 119.99686 * 2 1 4 4 H 1.08003 * 119.99960 * 204.14600 * 3 2 1 5 5 C 1.38812 * 120.00507 * 24.14832 * 3 2 1 6 6 N 1.31625 * 119.99485 * 10.75010 * 5 3 2 7 7 Si 1.86803 * 120.00329 * 190.75567 * 5 3 2 8 8 H 1.48505 * 109.46917 * 359.97438 * 7 5 3 9 9 H 1.48502 * 109.47152 * 119.99367 * 7 5 3 10 10 H 1.48497 * 109.46922 * 239.99854 * 7 5 3 11 11 S 1.65602 * 120.00067 * 179.97438 * 2 1 3 12 12 O 1.42099 * 106.40022 * 336.46052 * 11 2 1 13 13 O 1.42097 * 106.40243 * 203.54012 * 11 2 1 14 14 C 1.76195 * 107.21528 * 90.00072 * 11 2 1 15 15 C 1.38270 * 119.94484 * 90.00612 * 14 11 2 16 16 C 1.38146 * 120.05606 * 180.02562 * 15 14 11 17 17 C 1.38730 * 119.94374 * 359.97438 * 16 15 14 18 18 O 1.35925 * 120.05494 * 180.02562 * 17 16 15 19 19 C 1.34267 * 116.99415 * 77.19820 * 18 17 16 20 20 O 1.20818 * 120.00485 * 355.08627 * 19 18 17 21 21 C 1.50703 * 119.99318 * 175.09128 * 19 18 17 22 22 C 1.53002 * 109.46898 * 179.97438 * 21 19 18 23 23 C 1.52994 * 109.47473 * 299.99468 * 21 19 18 24 24 C 1.53002 * 109.47611 * 60.00082 * 21 19 18 25 25 C 1.38739 * 119.89064 * 0.28722 * 17 16 15 26 26 C 1.38141 * 119.93824 * 359.45909 * 25 17 16 27 27 H 1.08999 * 109.47245 * 274.85020 * 1 2 3 28 28 H 1.08997 * 109.47182 * 34.85196 * 1 2 3 29 29 H 1.09004 * 109.47186 * 154.85031 * 1 2 3 30 30 H 0.97003 * 119.99330 * 180.02562 * 6 5 3 31 31 H 1.07999 * 119.97142 * 359.97114 * 15 14 11 32 32 H 1.08000 * 120.02698 * 179.97438 * 16 15 14 33 33 H 1.09009 * 109.46852 * 59.99910 * 22 21 19 34 34 H 1.08992 * 109.47572 * 179.97438 * 22 21 19 35 35 H 1.08995 * 109.47290 * 299.99920 * 22 21 19 36 36 H 1.09004 * 109.47046 * 60.00063 * 23 21 19 37 37 H 1.08996 * 109.47864 * 180.02562 * 23 21 19 38 38 H 1.09002 * 109.47478 * 300.01017 * 23 21 19 39 39 H 1.09004 * 109.46837 * 59.99200 * 24 21 19 40 40 H 1.08992 * 109.47122 * 179.97438 * 24 21 19 41 41 H 1.09004 * 109.46465 * 299.99666 * 24 21 19 42 42 H 1.07993 * 120.02568 * 179.72378 * 25 17 16 43 43 H 1.08001 * 119.96802 * 180.23484 * 26 25 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1588 1.2269 -0.3826 5 6 1.5467 2.3355 0.4918 6 7 0.4087 2.2525 1.1480 7 14 2.3502 4.0002 0.2221 8 1 3.6134 3.8227 -0.5383 9 1 1.4287 4.8760 -0.5454 10 1 2.6475 4.6249 1.5360 11 16 2.2930 -1.4341 0.0006 12 8 1.4114 -2.4062 0.5455 13 8 3.5759 -1.1565 0.5449 14 6 2.5538 -1.8865 -1.6822 15 6 3.6936 -1.4647 -2.3416 16 6 3.9001 -1.8176 -3.6611 17 6 2.9630 -2.5963 -4.3245 18 8 3.1642 -2.9452 -5.6227 19 6 4.0410 -3.9342 -5.8591 20 8 4.6755 -4.4098 -4.9476 21 6 4.2339 -4.4507 -7.2616 22 6 5.2808 -5.5664 -7.2547 23 6 2.9070 -4.9992 -7.7902 24 6 4.7103 -3.3107 -8.1641 25 6 1.8175 -3.0137 -3.6623 26 6 1.6183 -2.6625 -2.3412 27 1 -0.3634 0.0869 1.0240 28 1 -0.3633 0.8433 -0.5872 29 1 -0.3634 -0.9303 -0.4368 30 1 -0.0127 3.0559 1.4914 31 1 4.4226 -0.8582 -1.8248 32 1 4.7904 -1.4876 -4.1759 33 1 4.9418 -6.3787 -6.6116 34 1 5.4201 -5.9404 -8.2689 35 1 6.2261 -5.1754 -6.8784 36 1 2.1614 -4.2040 -7.7952 37 1 3.0465 -5.3732 -8.8044 38 1 2.5676 -5.8113 -7.1472 39 1 5.6556 -2.9200 -7.7875 40 1 4.8502 -3.6845 -9.1784 41 1 3.9646 -2.5156 -8.1691 42 1 1.0845 -3.6161 -4.1780 43 1 0.7286 -2.9903 -1.8242 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001187446329.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:52 Heat of formation + Delta-G solvation = -136.868089 kcal Electronic energy + Delta-G solvation = -27879.554822 eV Core-core repulsion = 23824.025538 eV Total energy + Delta-G solvation = -4055.529284 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.71382 -40.18082 -38.25620 -38.16761 -37.34754 -36.95366 -36.74469 -33.12061 -32.35632 -31.74151 -28.29796 -28.26642 -28.18899 -26.18986 -25.35987 -24.23609 -23.56609 -21.07119 -20.46615 -19.60558 -19.26566 -18.47035 -18.24284 -17.90278 -17.86173 -16.58735 -16.24841 -16.10459 -15.86693 -15.73445 -15.08534 -14.95458 -14.79213 -14.68611 -14.64139 -14.34567 -13.96653 -13.69335 -13.40318 -13.29313 -13.13299 -13.12306 -13.07392 -13.05234 -13.04529 -12.73608 -12.67310 -12.41479 -12.22260 -12.08600 -12.03911 -12.00432 -11.97320 -11.82625 -11.55713 -11.01838 -10.36127 -10.28935 -9.86416 -8.09830 -5.88686 -0.67792 -0.32951 0.06590 0.86912 1.38172 1.47127 1.49394 1.61048 2.16651 2.39129 2.63595 2.89387 3.19602 3.25504 3.35081 3.63554 3.69767 3.72793 3.77456 4.00840 4.07220 4.24828 4.37206 4.47478 4.62104 4.67523 4.68467 4.71625 4.78994 4.87112 4.88486 4.89776 4.92980 4.96234 5.03560 5.09483 5.23738 5.27870 5.29391 5.29441 5.54372 5.58785 5.77215 6.51833 6.53624 7.07132 7.41682 8.93396 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018309 B = 0.002942 C = 0.002766 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1528.965870 B = 9516.175966 C =10121.277003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.142 3.858 2 N -0.870 5.870 3 C -0.331 4.331 4 H 0.097 0.903 5 C -0.009 4.009 6 N -0.914 5.914 7 Si 0.978 3.022 8 H -0.261 1.261 9 H -0.275 1.275 10 H -0.284 1.284 11 S 2.684 3.316 12 O -0.998 6.998 13 O -0.995 6.995 14 C -0.671 4.671 15 C -0.014 4.014 16 C -0.148 4.148 17 C 0.122 3.878 18 O -0.287 6.287 19 C 0.463 3.537 20 O -0.520 6.520 21 C -0.049 4.049 22 C -0.135 4.135 23 C -0.143 4.143 24 C -0.143 4.143 25 C -0.138 4.138 26 C -0.015 4.015 27 H 0.038 0.962 28 H 0.054 0.946 29 H 0.055 0.945 30 H 0.264 0.736 31 H 0.146 0.854 32 H 0.151 0.849 33 H 0.054 0.946 34 H 0.104 0.896 35 H 0.053 0.947 36 H 0.072 0.928 37 H 0.103 0.897 38 H 0.057 0.943 39 H 0.056 0.944 40 H 0.103 0.897 41 H 0.070 0.930 42 H 0.172 0.828 43 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.854 -11.846 -22.799 25.981 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.004 4.004 2 N -0.704 5.704 3 C -0.461 4.461 4 H 0.115 0.885 5 C -0.210 4.210 6 N -0.554 5.554 7 Si 0.802 3.198 8 H -0.185 1.185 9 H -0.200 1.200 10 H -0.211 1.211 11 S 2.778 3.222 12 O -0.988 6.988 13 O -0.985 6.985 14 C -0.759 4.759 15 C -0.033 4.033 16 C -0.167 4.167 17 C 0.080 3.920 18 O -0.202 6.202 19 C 0.308 3.692 20 O -0.406 6.406 21 C -0.050 4.050 22 C -0.192 4.192 23 C -0.200 4.200 24 C -0.200 4.200 25 C -0.157 4.157 26 C -0.034 4.034 27 H 0.057 0.943 28 H 0.073 0.927 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.164 0.836 32 H 0.169 0.831 33 H 0.073 0.927 34 H 0.122 0.878 35 H 0.073 0.927 36 H 0.091 0.909 37 H 0.121 0.879 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.121 0.879 41 H 0.089 0.911 42 H 0.189 0.811 43 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 4.209 -12.373 -21.695 25.328 hybrid contribution 0.254 1.170 0.073 1.199 sum 4.463 -11.204 -21.622 24.758 Atomic orbital electron populations 1.21015 0.79147 0.99055 1.01159 1.52706 1.13246 1.17926 1.86498 1.19418 1.00026 0.85773 1.40868 0.88528 1.26001 0.97264 1.02489 0.95283 1.70194 1.19168 1.29538 1.36547 0.85104 0.78626 0.78172 0.77857 1.18475 1.20045 1.21061 1.01760 0.72732 0.72647 0.75100 1.93449 1.66505 1.61500 1.77363 1.93433 1.42648 1.85104 1.77344 1.31196 1.04500 1.12998 1.27194 1.20926 0.94469 0.94029 0.93909 1.21538 1.00369 1.00020 0.94746 1.18921 0.94992 0.95239 0.82822 1.84621 1.59548 1.51170 1.24864 1.25292 0.74862 0.75228 0.93849 1.90717 1.45449 1.56532 1.47868 1.20842 1.00524 0.98204 0.85469 1.21851 0.96853 0.96180 1.04272 1.21962 0.93203 1.01645 1.03192 1.21960 1.01660 0.96312 1.00099 1.21506 0.98468 1.01679 0.94013 1.21073 0.97099 0.91336 0.93907 0.94328 0.92744 0.92668 0.92622 0.83601 0.83130 0.92712 0.87757 0.92743 0.90922 0.87866 0.92360 0.92500 0.87853 0.91084 0.81083 0.82071 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.14 6.69 8.59 127.77 1.10 7.79 16 2 N -0.87 -43.41 3.30 -364.89 -1.21 -44.62 16 3 C -0.33 -17.63 9.15 84.03 0.77 -16.86 16 4 H 0.10 4.99 7.70 -2.91 -0.02 4.97 16 5 C -0.01 -0.47 5.14 84.86 0.44 -0.04 16 6 N -0.91 -50.42 10.66 21.65 0.23 -50.19 16 7 Si 0.98 42.14 29.57 68.60 2.03 44.17 16 8 H -0.26 -10.73 7.11 99.48 0.71 -10.02 16 9 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 10 H -0.28 -12.28 7.11 99.48 0.71 -11.57 16 11 S 2.68 122.73 5.60 -56.49 -0.32 122.41 16 12 O -1.00 -47.03 16.25 -128.00 -2.08 -49.11 16 13 O -0.99 -50.74 16.39 -128.00 -2.10 -52.84 16 14 C -0.67 -25.38 5.97 22.28 0.13 -25.24 16 15 C -0.01 -0.50 9.52 22.26 0.21 -0.29 16 16 C -0.15 -4.55 9.58 22.37 0.21 -4.34 16 17 C 0.12 3.50 5.13 22.51 0.12 3.62 16 18 O -0.29 -6.86 9.83 4.50 0.04 -6.81 16 19 C 0.46 10.51 6.43 71.24 0.46 10.96 16 20 O -0.52 -15.65 15.48 21.98 0.34 -15.31 16 21 C -0.05 -0.66 0.96 -52.93 -0.05 -0.71 16 22 C -0.13 -1.63 7.76 71.98 0.56 -1.07 16 23 C -0.14 -1.30 8.41 71.98 0.61 -0.69 16 24 C -0.14 -1.38 8.40 71.98 0.60 -0.77 16 25 C -0.14 -3.77 9.99 22.37 0.22 -3.54 16 26 C -0.02 -0.48 9.51 22.25 0.21 -0.27 16 27 H 0.04 1.96 7.34 -2.39 -0.02 1.94 16 28 H 0.05 2.60 7.34 -2.39 -0.02 2.58 16 29 H 0.05 2.16 7.62 -2.38 -0.02 2.14 16 30 H 0.26 13.80 8.31 -92.71 -0.77 13.03 16 31 H 0.15 5.10 7.61 -2.91 -0.02 5.08 16 32 H 0.15 3.93 8.06 -2.91 -0.02 3.91 16 33 H 0.05 0.80 8.10 -2.38 -0.02 0.78 16 34 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.05 0.80 8.10 -2.39 -0.02 0.78 16 36 H 0.07 0.68 8.11 -2.38 -0.02 0.67 16 37 H 0.10 0.40 8.14 -2.39 -0.02 0.38 16 38 H 0.06 0.60 8.14 -2.39 -0.02 0.58 16 39 H 0.06 0.63 8.14 -2.38 -0.02 0.61 16 40 H 0.10 0.44 8.14 -2.39 -0.02 0.42 16 41 H 0.07 0.73 8.11 -2.38 -0.02 0.71 16 42 H 0.17 3.37 8.06 -2.91 -0.02 3.35 16 43 H 0.16 4.58 7.61 -2.91 -0.02 4.55 16 Total: -1.00 -72.50 375.73 3.54 -68.96 By element: Atomic # 1 Polarization: 13.76 SS G_CDS: 1.01 Total: 14.77 kcal Atomic # 6 Polarization: -37.03 SS G_CDS: 5.59 Total: -31.44 kcal Atomic # 7 Polarization: -93.83 SS G_CDS: -0.97 Total: -94.81 kcal Atomic # 8 Polarization: -120.27 SS G_CDS: -3.79 Total: -124.07 kcal Atomic # 14 Polarization: 42.14 SS G_CDS: 2.03 Total: 44.17 kcal Atomic # 16 Polarization: 122.73 SS G_CDS: -0.32 Total: 122.41 kcal Total: -72.50 3.54 -68.96 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001187446329.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.905 kcal (2) G-P(sol) polarization free energy of solvation -72.505 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.410 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.541 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.963 kcal (6) G-S(sol) free energy of system = (1) + (5) -136.868 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds