Wall clock time and date at job start Sat Apr 11 2020 06:15:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53003 * 109.47265 * 2 1 4 4 C 1.52997 * 109.47265 * 180.02562 * 3 2 1 5 5 C 1.53003 * 109.47265 * 180.02562 * 4 3 2 6 6 O 1.45193 * 109.47514 * 179.97438 * 5 4 3 7 7 C 1.34762 * 117.00262 * 180.02562 * 6 5 4 8 8 O 1.21514 * 119.99935 * 0.02562 * 7 6 5 9 9 C 1.47388 * 119.99876 * 180.02562 * 7 6 5 10 10 C 1.39856 * 120.07490 * 0.26946 * 9 7 6 11 11 C 1.37106 * 119.92374 * 180.25333 * 10 9 7 12 12 C 1.39243 * 120.07381 * 359.49867 * 11 10 9 13 13 N 1.39012 * 119.92519 * 180.25263 * 12 11 10 14 14 S 1.65597 * 120.00054 * 133.77128 * 13 12 11 15 15 O 1.42101 * 106.39975 * 52.05248 * 14 13 12 16 16 O 1.42099 * 106.40260 * 184.97462 * 14 13 12 17 17 C 1.76206 * 107.21640 * 298.51506 * 14 13 12 18 18 H 1.07997 * 120.00191 * 4.90289 * 17 14 13 19 19 C 1.37882 * 119.99636 * 184.89979 * 17 14 13 20 20 N 1.31512 * 119.99985 * 359.97438 * 19 17 14 21 21 Si 1.86799 * 119.99684 * 180.02562 * 19 17 14 22 22 H 1.48493 * 109.47388 * 60.00227 * 21 19 17 23 23 H 1.48505 * 109.47005 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.47068 * 299.99822 * 21 19 17 25 25 C 1.39237 * 120.14518 * 0.22945 * 12 11 10 26 26 C 1.37108 * 120.07673 * 0.02605 * 25 12 11 27 27 H 1.08992 * 109.47200 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47117 * 299.99668 * 1 2 3 29 29 H 1.09001 * 109.47196 * 59.99286 * 1 2 3 30 30 H 1.09002 * 109.47117 * 240.00332 * 2 1 3 31 31 H 1.08996 * 109.47445 * 120.00023 * 2 1 3 32 32 H 1.09002 * 109.46782 * 60.00127 * 3 2 1 33 33 H 1.09001 * 109.47142 * 300.00747 * 3 2 1 34 34 H 1.09002 * 109.47117 * 60.00332 * 4 3 2 35 35 H 1.08996 * 109.47445 * 300.00023 * 4 3 2 36 36 H 1.09002 * 109.46782 * 60.00127 * 5 4 3 37 37 H 1.09001 * 109.47142 * 300.00747 * 5 4 3 38 38 H 1.08003 * 120.03584 * 0.02880 * 10 9 7 39 39 H 1.08002 * 119.96261 * 179.77721 * 11 10 9 40 40 H 0.96999 * 119.99979 * 313.77782 * 13 12 11 41 41 H 0.97003 * 119.99816 * 179.97438 * 20 19 17 42 42 H 1.08001 * 119.95883 * 180.02562 * 25 12 11 43 43 H 1.08000 * 120.03274 * 180.02562 * 26 25 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 6 4.0800 2.8850 0.0000 6 8 5.5320 2.8851 0.0000 7 6 6.1438 4.0858 0.0011 8 8 5.4819 5.1049 0.0025 9 6 7.6156 4.1629 0.0006 10 6 8.3788 2.9910 -0.0067 11 6 9.7478 3.0663 -0.0019 12 6 10.3784 4.3078 -0.0003 13 7 11.7666 4.3805 -0.0008 14 16 12.5411 5.4161 -1.0351 15 8 11.9482 6.6931 -0.8429 16 8 13.9325 5.1736 -0.8784 17 6 12.1310 4.9188 -2.6751 18 1 11.4184 4.1235 -2.8359 19 6 12.7199 5.5453 -3.7530 20 7 13.5873 6.5142 -3.5571 21 14 12.2846 5.0186 -5.4915 22 1 10.8293 5.2095 -5.7169 23 1 13.0477 5.8418 -6.4638 24 1 12.6305 3.5863 -5.6760 25 6 9.6215 5.4764 0.0012 26 6 8.2521 5.4082 0.0017 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.6767 1.9563 0.8900 33 1 1.6766 1.9564 -0.8899 34 1 3.9329 0.9289 -0.8909 35 1 3.9337 0.9286 0.8891 36 1 3.7171 3.3983 0.8905 37 1 3.7162 3.3994 -0.8895 38 1 7.8904 2.0278 -0.0124 39 1 10.3378 2.1617 -0.0039 40 1 12.2816 3.8246 0.6048 41 1 14.0019 6.9546 -4.3154 42 1 10.1137 6.4378 0.0020 43 1 7.6657 6.3151 0.0025 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001192982146.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:57 Heat of formation + Delta-G solvation = -197.320652 kcal Electronic energy + Delta-G solvation = -26460.249010 eV Core-core repulsion = 22402.098306 eV Total energy + Delta-G solvation = -4058.150704 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.65276 -40.23950 -37.92504 -37.52530 -36.54450 -36.29296 -36.02453 -35.19143 -32.57550 -32.09177 -30.59882 -28.30473 -27.35472 -24.87519 -23.86240 -22.84211 -22.15572 -21.69884 -21.17352 -19.62225 -19.19766 -18.50548 -18.30968 -17.92671 -17.71129 -17.03787 -16.39868 -16.21225 -15.82750 -15.74404 -15.50337 -14.98673 -14.89709 -14.59907 -14.43216 -14.11770 -14.00660 -13.83436 -13.66323 -13.44973 -13.38777 -13.02249 -12.74248 -12.62007 -12.61462 -12.46143 -12.34361 -12.25276 -12.18716 -12.09832 -11.80802 -11.54836 -11.53259 -11.40336 -11.35478 -11.25683 -10.98900 -10.09572 -9.46434 -8.79040 -7.53017 -0.46546 0.17489 0.38399 1.33525 1.35912 1.45643 1.48635 1.57305 2.17697 2.54559 2.68889 2.76832 3.51710 3.55834 3.82746 3.90950 3.92068 3.97423 4.11271 4.15173 4.22923 4.31634 4.33684 4.37633 4.44244 4.63554 4.63879 4.80004 4.83932 4.88477 4.99413 5.06987 5.08306 5.11806 5.19093 5.24175 5.25956 5.30766 5.40482 5.42350 5.48209 5.51575 5.75547 5.85613 6.22171 6.67737 6.74368 8.16729 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.016769 B = 0.002245 C = 0.002114 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1669.299191 B =12468.492053 C =13239.009289 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.123 4.123 3 C -0.116 4.116 4 C -0.112 4.112 5 C 0.060 3.940 6 O -0.349 6.349 7 C 0.520 3.480 8 O -0.540 6.540 9 C -0.165 4.165 10 C -0.026 4.026 11 C -0.148 4.148 12 C 0.196 3.804 13 N -1.058 6.058 14 S 2.710 3.290 15 O -1.026 7.026 16 O -1.027 7.027 17 C -1.033 5.033 18 H 0.120 0.880 19 C 0.073 3.927 20 N -0.889 5.889 21 Si 0.988 3.012 22 H -0.254 1.254 23 H -0.263 1.263 24 H -0.247 1.247 25 C -0.186 4.186 26 C -0.032 4.032 27 H 0.058 0.942 28 H 0.054 0.946 29 H 0.053 0.947 30 H 0.065 0.935 31 H 0.066 0.934 32 H 0.068 0.932 33 H 0.065 0.935 34 H 0.078 0.922 35 H 0.081 0.919 36 H 0.070 0.930 37 H 0.067 0.933 38 H 0.174 0.826 39 H 0.168 0.832 40 H 0.432 0.568 41 H 0.300 0.700 42 H 0.141 0.859 43 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.748 -15.025 6.262 26.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.160 4.160 3 C -0.154 4.154 4 C -0.149 4.149 5 C -0.013 4.013 6 O -0.265 6.265 7 C 0.367 3.633 8 O -0.432 6.432 9 C -0.167 4.167 10 C -0.044 4.044 11 C -0.169 4.169 12 C 0.098 3.902 13 N -0.807 5.807 14 S 2.813 3.187 15 O -1.016 7.016 16 O -1.017 7.017 17 C -1.167 5.167 18 H 0.138 0.862 19 C -0.140 4.140 20 N -0.520 5.520 21 Si 0.806 3.194 22 H -0.178 1.178 23 H -0.187 1.187 24 H -0.170 1.170 25 C -0.207 4.207 26 C -0.051 4.051 27 H 0.077 0.923 28 H 0.074 0.926 29 H 0.072 0.928 30 H 0.083 0.917 31 H 0.085 0.915 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.097 0.903 35 H 0.100 0.900 36 H 0.088 0.912 37 H 0.085 0.915 38 H 0.192 0.808 39 H 0.186 0.814 40 H 0.270 0.730 41 H 0.111 0.889 42 H 0.159 0.841 43 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges -20.282 -13.766 6.419 25.339 hybrid contribution 0.128 0.050 -0.830 0.841 sum -20.154 -13.716 5.589 25.011 Atomic orbital electron populations 1.21789 0.95548 1.01992 1.01908 1.21500 0.96106 0.95880 1.02557 1.21526 0.93029 0.98029 1.02774 1.21578 0.96110 0.92861 1.04348 1.23353 0.74979 1.00334 1.02647 1.86515 1.24625 1.31509 1.83851 1.21094 0.88989 0.81417 0.71751 1.90816 1.67418 1.37084 1.47875 1.19145 0.89029 0.95296 1.13220 1.21438 0.92661 0.98460 0.91890 1.21344 0.95181 0.96729 1.03682 1.17983 0.82415 0.94774 0.95025 1.53303 1.12200 1.61127 1.54067 1.00431 0.71245 0.72130 0.74890 1.93298 1.78319 1.42268 1.87704 1.93344 1.34335 1.85813 1.88230 1.30696 1.38859 1.32973 1.14135 0.86161 1.25952 0.90287 0.91195 1.06609 1.69967 1.24205 1.20809 1.36985 0.85189 0.79879 0.80087 0.74277 1.17805 1.18748 1.17047 1.21722 0.94707 0.99539 1.04772 1.20965 0.93260 0.97575 0.93329 0.92284 0.92642 0.92777 0.91672 0.91494 0.91368 0.91591 0.90318 0.90048 0.91156 0.91493 0.80845 0.81448 0.73020 0.88949 0.84133 0.84259 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.29 9.91 71.98 0.71 -0.57 16 2 C -0.12 -1.07 5.93 30.59 0.18 -0.89 16 3 C -0.12 -1.14 5.21 30.59 0.16 -0.99 16 4 C -0.11 -1.32 5.59 30.59 0.17 -1.15 16 5 C 0.06 1.06 5.48 71.98 0.39 1.46 16 6 O -0.35 -7.76 9.46 -56.73 -0.54 -8.30 16 7 C 0.52 14.56 7.89 70.23 0.55 15.12 16 8 O -0.54 -17.90 16.13 19.79 0.32 -17.58 16 9 C -0.16 -4.67 5.88 -20.09 -0.12 -4.79 16 10 C -0.03 -0.60 9.58 22.40 0.21 -0.39 16 11 C -0.15 -3.80 9.93 22.25 0.22 -3.58 16 12 C 0.20 6.74 6.12 38.49 0.24 6.97 16 13 N -1.06 -39.46 5.73 -51.37 -0.29 -39.76 16 14 S 2.71 139.26 4.94 -56.49 -0.28 138.98 16 15 O -1.03 -57.87 15.12 -128.00 -1.94 -59.81 16 16 O -1.03 -58.78 17.92 -128.00 -2.29 -61.07 16 17 C -1.03 -54.87 9.60 67.74 0.65 -54.22 16 18 H 0.12 5.78 7.81 -2.91 -0.02 5.75 16 19 C 0.07 3.97 5.46 84.66 0.46 4.43 16 20 N -0.89 -51.56 13.10 21.45 0.28 -51.28 16 21 Si 0.99 40.40 29.54 68.60 2.03 42.43 16 22 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 23 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 24 H -0.25 -9.39 7.11 99.48 0.71 -8.68 16 25 C -0.19 -6.94 9.18 22.24 0.20 -6.74 16 26 C -0.03 -1.06 9.56 22.39 0.21 -0.85 16 27 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 28 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 29 H 0.05 0.45 8.14 -2.39 -0.02 0.43 16 30 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 31 H 0.07 0.54 8.14 -2.39 -0.02 0.53 16 32 H 0.07 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.07 0.66 8.14 -2.39 -0.02 0.64 16 34 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.08 0.88 8.14 -2.39 -0.02 0.87 16 36 H 0.07 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.17 2.79 7.60 -2.91 -0.02 2.77 16 39 H 0.17 3.19 8.06 -2.91 -0.02 3.17 16 40 H 0.43 12.86 8.95 -96.75 -0.87 12.00 16 41 H 0.30 15.70 8.31 -92.71 -0.77 14.93 16 42 H 0.14 6.02 5.67 -2.91 -0.02 6.00 16 43 H 0.14 4.41 7.64 -2.91 -0.02 4.39 16 Total: -1.00 -74.83 382.19 1.71 -73.12 By element: Atomic # 1 Polarization: 29.27 SS G_CDS: 0.16 Total: 29.43 kcal Atomic # 6 Polarization: -50.44 SS G_CDS: 4.26 Total: -46.18 kcal Atomic # 7 Polarization: -91.02 SS G_CDS: -0.01 Total: -91.03 kcal Atomic # 8 Polarization: -142.32 SS G_CDS: -4.45 Total: -146.76 kcal Atomic # 14 Polarization: 40.40 SS G_CDS: 2.03 Total: 42.43 kcal Atomic # 16 Polarization: 139.26 SS G_CDS: -0.28 Total: 138.98 kcal Total: -74.83 1.71 -73.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001192982146.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -124.198 kcal (2) G-P(sol) polarization free energy of solvation -74.831 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -199.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.122 kcal (6) G-S(sol) free energy of system = (1) + (5) -197.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds