Wall clock time and date at job start Sat Apr 11 2020 06:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46915 * 2 1 4 4 O 1.42902 * 109.46937 * 119.99420 * 2 1 3 5 5 C 1.35906 * 116.99584 * 181.58083 * 4 2 1 6 6 C 1.38729 * 120.04948 * 174.32793 * 5 4 2 7 7 C 1.38150 * 119.94155 * 179.97438 * 6 5 4 8 8 C 1.38265 * 120.05339 * 359.97151 * 7 6 5 9 9 C 1.38263 * 120.11652 * 0.05090 * 8 7 6 10 10 C 1.38148 * 120.05120 * 359.95118 * 9 8 7 11 11 C 1.50695 * 109.47623 * 240.00214 * 2 1 3 12 12 O 1.21280 * 119.99958 * 239.99900 * 11 2 1 13 13 N 1.34772 * 120.00125 * 59.99637 * 11 2 1 14 14 S 1.65607 * 120.00139 * 180.02562 * 13 11 2 15 15 O 1.42094 * 104.27621 * 181.07199 * 14 13 11 16 16 O 1.42100 * 104.27121 * 308.92744 * 14 13 11 17 17 C 1.81395 * 104.44967 * 64.99918 * 14 13 11 18 18 C 1.53006 * 109.47238 * 180.02562 * 17 14 13 19 19 C 1.50696 * 109.47177 * 179.97438 * 18 17 14 20 20 H 1.08003 * 120.00092 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99852 * 180.02562 * 19 18 17 22 22 N 1.31517 * 119.99965 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99951 * 359.97438 * 21 19 18 24 24 H 1.48495 * 109.46865 * 90.00354 * 23 21 19 25 25 H 1.48500 * 109.47130 * 210.00382 * 23 21 19 26 26 H 1.48500 * 109.47075 * 330.00347 * 23 21 19 27 27 H 1.08994 * 109.47578 * 304.80525 * 1 2 3 28 28 H 1.09002 * 109.46997 * 64.80226 * 1 2 3 29 29 H 1.09005 * 109.47057 * 184.79688 * 1 2 3 30 30 H 1.09001 * 109.47494 * 172.60401 * 3 2 1 31 31 H 1.08997 * 109.47275 * 292.60854 * 3 2 1 32 32 H 1.08999 * 109.47115 * 52.60692 * 3 2 1 33 33 H 1.07998 * 120.03158 * 359.70020 * 6 5 4 34 34 H 1.08002 * 119.97024 * 180.02562 * 7 6 5 35 35 H 1.08009 * 119.93925 * 179.97438 * 8 7 6 36 36 H 1.07998 * 119.97445 * 179.97438 * 9 8 7 37 37 H 1.08004 * 120.02684 * 180.02562 * 10 9 8 38 38 H 0.96998 * 120.00409 * 359.97438 * 13 11 2 39 39 H 1.09008 * 109.47140 * 299.99922 * 17 14 13 40 40 H 1.08995 * 109.47152 * 60.00062 * 17 14 13 41 41 H 1.08999 * 109.46553 * 300.00417 * 18 17 14 42 42 H 1.09005 * 109.46765 * 59.99876 * 18 17 14 43 43 H 0.96999 * 119.99627 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 3.3532 -0.7337 1.3379 6 6 3.8823 -1.2674 2.5040 7 6 5.2518 -1.3279 2.6753 8 6 6.0948 -0.8577 1.6854 9 6 5.5700 -0.3249 0.5225 10 6 4.2013 -0.2621 0.3464 11 6 2.0324 -0.7103 -1.2304 12 8 2.7297 -1.6963 -1.1191 13 7 1.7069 -0.2499 -2.4545 14 16 2.2585 -1.0309 -3.8067 15 8 1.7474 -0.2632 -4.8877 16 8 3.6579 -1.1548 -3.5932 17 6 1.4590 -2.6581 -3.7474 18 6 1.8947 -3.4849 -4.9588 19 6 1.2310 -4.8369 -4.9092 20 1 0.5653 -5.0821 -4.0949 21 6 1.4744 -5.7612 -5.9029 22 7 0.8948 -6.9410 -5.8600 23 14 2.6264 -5.3372 -7.3110 24 1 4.0129 -5.7283 -6.9511 25 1 2.2064 -6.0706 -8.5321 26 1 2.5755 -3.8757 -7.5693 27 1 -0.3634 0.5865 0.8437 28 1 -0.3633 0.4375 -0.9299 29 1 -0.3633 -1.0241 0.0859 30 1 3.1219 1.4455 0.1323 31 1 1.7886 1.9168 -0.9487 32 1 1.5726 1.9931 0.8165 33 1 3.2241 -1.6311 3.2791 34 1 5.6641 -1.7436 3.5828 35 1 7.1653 -0.9055 1.8214 36 1 6.2307 0.0421 -0.2490 37 1 3.7917 0.1538 -0.5623 38 1 1.1488 0.5385 -2.5436 39 1 1.7511 -3.1733 -2.8323 40 1 0.3765 -2.5318 -3.7636 41 1 1.6031 -2.9698 -5.8741 42 1 2.9773 -3.6111 -4.9421 43 1 1.0658 -7.5910 -6.5593 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320639952.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:20 Heat of formation + Delta-G solvation = -104.714378 kcal Electronic energy + Delta-G solvation = -28647.919901 eV Core-core repulsion = 24593.784906 eV Total energy + Delta-G solvation = -4054.134995 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.82550 -39.29951 -37.63127 -36.90713 -35.85542 -35.18083 -34.00565 -33.25452 -31.53449 -31.08966 -29.97817 -27.81936 -26.07255 -24.81762 -23.03423 -22.55136 -21.39393 -20.86522 -19.69086 -18.90817 -17.91103 -17.16502 -17.01341 -16.69814 -16.01652 -15.88959 -15.65306 -15.23988 -15.16208 -14.60757 -14.31320 -14.18370 -13.75400 -13.74807 -13.35139 -13.13190 -12.91828 -12.85410 -12.76214 -12.55582 -12.47926 -12.21595 -11.99211 -11.94076 -11.83997 -11.76488 -11.34105 -11.28445 -11.27732 -11.05031 -10.85381 -10.47044 -10.29863 -10.11161 -9.67881 -9.39340 -8.99118 -8.67566 -8.23700 -6.17642 -4.19339 0.25860 1.28408 1.37827 1.76065 2.40344 2.77896 3.25900 3.32797 3.35833 3.60024 3.73210 3.86286 4.16468 4.22629 4.34389 4.39523 4.63629 4.75955 4.78353 4.94932 5.01155 5.07379 5.11162 5.13360 5.19867 5.31157 5.37648 5.40480 5.47288 5.54249 5.58067 5.65178 5.91933 6.19111 6.20409 6.32270 6.35280 6.47491 6.62102 6.75281 6.88341 7.09010 7.27005 7.51322 8.34727 8.83214 9.41229 10.94682 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014075 B = 0.003495 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.927027 B = 8008.571031 C = 8558.989979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.100 3.900 3 C -0.200 4.200 4 O -0.284 6.284 5 C 0.133 3.867 6 C -0.150 4.150 7 C -0.086 4.086 8 C -0.156 4.156 9 C -0.081 4.081 10 C -0.188 4.188 11 C 0.507 3.493 12 O -0.461 6.461 13 N -1.054 6.054 14 S 2.559 3.441 15 O -0.951 6.951 16 O -0.935 6.935 17 C -0.568 4.568 18 C -0.005 4.005 19 C -0.519 4.519 20 H 0.079 0.921 21 C 0.073 3.927 22 N -0.894 5.894 23 Si 0.869 3.131 24 H -0.271 1.271 25 H -0.281 1.281 26 H -0.262 1.262 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.090 0.910 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.129 0.871 34 H 0.127 0.873 35 H 0.122 0.878 36 H 0.124 0.876 37 H 0.126 0.874 38 H 0.429 0.571 39 H 0.137 0.863 40 H 0.129 0.871 41 H 0.033 0.967 42 H 0.030 0.970 43 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.695 19.567 16.391 25.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.056 3.944 3 C -0.257 4.257 4 O -0.196 6.196 5 C 0.088 3.912 6 C -0.168 4.168 7 C -0.105 4.105 8 C -0.174 4.174 9 C -0.099 4.099 10 C -0.206 4.206 11 C 0.292 3.708 12 O -0.330 6.330 13 N -0.818 5.818 14 S 2.659 3.341 15 O -0.942 6.942 16 O -0.925 6.925 17 C -0.702 4.702 18 C -0.044 4.044 19 C -0.558 4.558 20 H 0.097 0.903 21 C -0.130 4.130 22 N -0.531 5.531 23 Si 0.695 3.305 24 H -0.196 1.196 25 H -0.207 1.207 26 H -0.187 1.187 27 H 0.105 0.895 28 H 0.105 0.895 29 H 0.100 0.900 30 H 0.108 0.892 31 H 0.100 0.900 32 H 0.106 0.894 33 H 0.147 0.853 34 H 0.145 0.855 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.143 0.857 38 H 0.264 0.736 39 H 0.155 0.845 40 H 0.147 0.853 41 H 0.051 0.949 42 H 0.049 0.951 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.670 18.997 15.931 24.936 hybrid contribution -0.083 0.082 -0.839 0.847 sum 2.587 19.079 15.092 24.464 Atomic orbital electron populations 1.21877 0.88389 1.05217 1.04419 1.21827 0.97365 0.92242 0.82917 1.22887 1.04818 0.93264 1.04756 1.86214 1.19870 1.73019 1.40544 1.18847 0.81807 0.96137 0.94372 1.20358 0.95400 1.04600 0.96489 1.20916 0.92298 0.98223 0.99016 1.21049 0.99832 1.01934 0.94598 1.20970 0.94364 0.97467 0.97118 1.21459 0.94727 1.05630 0.98786 1.21182 0.79225 0.84981 0.85426 1.91028 1.32411 1.23774 1.85753 1.55474 1.62313 1.41717 1.22253 1.06890 0.76139 0.78487 0.72543 1.93603 1.81363 1.69123 1.50083 1.93612 1.28696 1.86720 1.83447 1.30176 1.12522 1.16503 1.11016 1.19434 0.97744 0.97139 0.90098 1.20797 1.28777 0.95455 1.10815 0.90309 1.24968 0.95527 0.94708 0.97787 1.69878 1.43140 1.05776 1.34353 0.86930 0.81815 0.79495 0.82240 1.19584 1.20661 1.18674 0.89489 0.89483 0.89982 0.89164 0.90036 0.89384 0.85285 0.85471 0.86008 0.85787 0.85687 0.73555 0.84471 0.85303 0.94852 0.95139 0.92318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.95 8.78 37.16 0.33 -0.62 16 2 C 0.10 1.00 0.96 -91.77 -0.09 0.91 16 3 C -0.20 -1.45 8.10 37.16 0.30 -1.15 16 4 O -0.28 -3.50 9.62 -39.35 -0.38 -3.88 16 5 C 0.13 1.76 5.55 -39.22 -0.22 1.55 16 6 C -0.15 -1.77 9.99 -39.43 -0.39 -2.17 16 7 C -0.09 -0.92 10.04 -39.60 -0.40 -1.31 16 8 C -0.16 -1.73 10.04 -39.56 -0.40 -2.12 16 9 C -0.08 -1.02 10.04 -39.61 -0.40 -1.42 16 10 C -0.19 -2.55 5.59 -39.43 -0.22 -2.77 16 11 C 0.51 6.70 4.33 -10.99 -0.05 6.65 16 12 O -0.46 -8.06 12.01 -22.96 -0.28 -8.34 16 13 N -1.05 -12.36 5.31 31.22 0.17 -12.19 16 14 S 2.56 43.24 5.11 -107.50 -0.55 42.69 16 15 O -0.95 -17.23 18.08 -57.54 -1.04 -18.27 16 16 O -0.93 -18.92 17.04 -64.79 -1.10 -20.03 16 17 C -0.57 -10.78 5.82 37.16 0.22 -10.57 16 18 C 0.00 -0.11 4.05 -27.88 -0.11 -0.22 16 19 C -0.52 -14.70 9.66 -34.44 -0.33 -15.03 16 20 H 0.08 2.35 7.99 -52.48 -0.42 1.93 16 21 C 0.07 2.12 5.47 -17.82 -0.10 2.02 16 22 N -0.89 -27.19 13.96 55.43 0.77 -26.41 16 23 Si 0.87 21.59 27.47 -169.99 -4.67 16.92 16 24 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 25 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 26 H -0.26 -6.25 6.54 56.52 0.37 -5.88 16 27 H 0.09 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.09 0.37 7.43 -51.93 -0.39 -0.02 16 29 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.09 0.78 4.68 -51.93 -0.24 0.54 16 31 H 0.08 0.41 7.37 -51.93 -0.38 0.03 16 32 H 0.09 0.48 8.13 -51.93 -0.42 0.06 16 33 H 0.13 1.29 8.06 -52.49 -0.42 0.87 16 34 H 0.13 0.99 8.06 -52.49 -0.42 0.56 16 35 H 0.12 1.06 8.06 -52.48 -0.42 0.64 16 36 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 37 H 0.13 1.68 3.78 -52.48 -0.20 1.48 16 38 H 0.43 3.08 7.49 -34.47 -0.26 2.82 16 39 H 0.14 2.64 7.19 -51.92 -0.37 2.27 16 40 H 0.13 2.10 8.14 -51.93 -0.42 1.68 16 41 H 0.03 0.78 7.20 -51.93 -0.37 0.41 16 42 H 0.03 0.73 7.57 -51.93 -0.39 0.34 16 43 H 0.27 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 361.58 15.07 5.45 5.45 Total: -1.00 -37.77 361.58 -9.07 -46.83 By element: Atomic # 1 Polarization: 9.07 SS G_CDS: -5.58 Total: 3.50 kcal Atomic # 6 Polarization: -24.40 SS G_CDS: -1.86 Total: -26.26 kcal Atomic # 7 Polarization: -39.55 SS G_CDS: 0.94 Total: -38.61 kcal Atomic # 8 Polarization: -47.72 SS G_CDS: -2.80 Total: -50.52 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -4.67 Total: 16.92 kcal Atomic # 16 Polarization: 43.24 SS G_CDS: -0.55 Total: 42.69 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -37.77 -9.07 -46.83 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320639952.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.883 kcal (2) G-P(sol) polarization free energy of solvation -37.766 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.066 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.831 kcal (6) G-S(sol) free energy of system = (1) + (5) -104.714 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds