Wall clock time and date at job start Sat Apr 11 2020 06:17:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53004 * 109.46915 * 2 1 4 4 O 1.42902 * 109.46937 * 119.99420 * 2 1 3 5 5 C 1.35906 * 116.99584 * 181.58083 * 4 2 1 6 6 C 1.38729 * 120.04948 * 174.32793 * 5 4 2 7 7 C 1.38150 * 119.94155 * 179.97438 * 6 5 4 8 8 C 1.38265 * 120.05339 * 359.97151 * 7 6 5 9 9 C 1.38263 * 120.11652 * 0.05090 * 8 7 6 10 10 C 1.38148 * 120.05120 * 359.95118 * 9 8 7 11 11 C 1.50695 * 109.47623 * 240.00214 * 2 1 3 12 12 O 1.21280 * 119.99958 * 239.99900 * 11 2 1 13 13 N 1.34772 * 120.00125 * 59.99637 * 11 2 1 14 14 S 1.65607 * 120.00139 * 180.02562 * 13 11 2 15 15 O 1.42094 * 104.27621 * 181.07199 * 14 13 11 16 16 O 1.42100 * 104.27121 * 308.92744 * 14 13 11 17 17 C 1.81395 * 104.44967 * 64.99918 * 14 13 11 18 18 C 1.53006 * 109.47238 * 180.02562 * 17 14 13 19 19 C 1.50696 * 109.47177 * 179.97438 * 18 17 14 20 20 H 1.08003 * 120.00092 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99852 * 180.02562 * 19 18 17 22 22 N 1.31517 * 119.99965 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99951 * 359.97438 * 21 19 18 24 24 H 1.48495 * 109.46865 * 90.00354 * 23 21 19 25 25 H 1.48500 * 109.47130 * 210.00382 * 23 21 19 26 26 H 1.48500 * 109.47075 * 330.00347 * 23 21 19 27 27 H 1.08994 * 109.47578 * 304.80525 * 1 2 3 28 28 H 1.09002 * 109.46997 * 64.80226 * 1 2 3 29 29 H 1.09005 * 109.47057 * 184.79688 * 1 2 3 30 30 H 1.09001 * 109.47494 * 172.60401 * 3 2 1 31 31 H 1.08997 * 109.47275 * 292.60854 * 3 2 1 32 32 H 1.08999 * 109.47115 * 52.60692 * 3 2 1 33 33 H 1.07998 * 120.03158 * 359.70020 * 6 5 4 34 34 H 1.08002 * 119.97024 * 180.02562 * 7 6 5 35 35 H 1.08009 * 119.93925 * 179.97438 * 8 7 6 36 36 H 1.07998 * 119.97445 * 179.97438 * 9 8 7 37 37 H 1.08004 * 120.02684 * 180.02562 * 10 9 8 38 38 H 0.96998 * 120.00409 * 359.97438 * 13 11 2 39 39 H 1.09008 * 109.47140 * 299.99922 * 17 14 13 40 40 H 1.08995 * 109.47152 * 60.00062 * 17 14 13 41 41 H 1.08999 * 109.46553 * 300.00417 * 18 17 14 42 42 H 1.09005 * 109.46765 * 59.99876 * 18 17 14 43 43 H 0.96999 * 119.99627 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 8 2.0063 -0.6735 1.1669 5 6 3.3532 -0.7337 1.3379 6 6 3.8823 -1.2674 2.5040 7 6 5.2518 -1.3279 2.6753 8 6 6.0948 -0.8577 1.6854 9 6 5.5700 -0.3249 0.5225 10 6 4.2013 -0.2621 0.3464 11 6 2.0324 -0.7103 -1.2304 12 8 2.7297 -1.6963 -1.1191 13 7 1.7069 -0.2499 -2.4545 14 16 2.2585 -1.0309 -3.8067 15 8 1.7474 -0.2632 -4.8877 16 8 3.6579 -1.1548 -3.5932 17 6 1.4590 -2.6581 -3.7474 18 6 1.8947 -3.4849 -4.9588 19 6 1.2310 -4.8369 -4.9092 20 1 0.5653 -5.0821 -4.0949 21 6 1.4744 -5.7612 -5.9029 22 7 0.8948 -6.9410 -5.8600 23 14 2.6264 -5.3372 -7.3110 24 1 4.0129 -5.7283 -6.9511 25 1 2.2064 -6.0706 -8.5321 26 1 2.5755 -3.8757 -7.5693 27 1 -0.3634 0.5865 0.8437 28 1 -0.3633 0.4375 -0.9299 29 1 -0.3633 -1.0241 0.0859 30 1 3.1219 1.4455 0.1323 31 1 1.7886 1.9168 -0.9487 32 1 1.5726 1.9931 0.8165 33 1 3.2241 -1.6311 3.2791 34 1 5.6641 -1.7436 3.5828 35 1 7.1653 -0.9055 1.8214 36 1 6.2307 0.0421 -0.2490 37 1 3.7917 0.1538 -0.5623 38 1 1.1488 0.5385 -2.5436 39 1 1.7511 -3.1733 -2.8323 40 1 0.3765 -2.5318 -3.7636 41 1 1.6031 -2.9698 -5.8741 42 1 2.9773 -3.6111 -4.9421 43 1 1.0658 -7.5910 -6.5593 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320639952.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:19 Heat of formation + Delta-G solvation = -132.525630 kcal Electronic energy + Delta-G solvation = -28649.125888 eV Core-core repulsion = 24593.784906 eV Total energy + Delta-G solvation = -4055.340981 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.76205 -40.28783 -38.58284 -38.28561 -37.34041 -36.26896 -35.95402 -34.07911 -33.56294 -31.94188 -30.82380 -28.38155 -28.01251 -25.71946 -23.97580 -23.41971 -23.25996 -21.79992 -20.95216 -19.96489 -19.51597 -18.70432 -18.08534 -17.63555 -17.34933 -16.92030 -16.82755 -16.48416 -16.32910 -16.25292 -15.49522 -15.34309 -14.99769 -14.87838 -14.59762 -14.22959 -13.96381 -13.85019 -13.71125 -13.63581 -13.47541 -13.34660 -13.22813 -13.16093 -13.14805 -13.08823 -12.97058 -12.56880 -12.38771 -12.24054 -11.98937 -11.93217 -11.76227 -11.73662 -11.32987 -11.17518 -10.88161 -9.88560 -9.13148 -8.39907 -6.46810 -1.14173 0.39135 0.48225 0.72420 1.19793 1.30489 1.31192 1.41436 1.98478 2.26666 2.39813 2.69380 2.84382 2.93588 3.04397 3.52545 3.58376 3.63170 3.83131 3.89316 3.92046 3.92443 4.24826 4.35355 4.45484 4.48207 4.53594 4.55603 4.64506 4.71541 4.80473 4.95588 4.99591 5.05428 5.06032 5.15170 5.33707 5.41254 5.43450 5.47884 5.59639 5.79188 6.11514 6.14518 6.36526 6.58540 7.17397 8.75843 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014075 B = 0.003495 C = 0.003271 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1988.927027 B = 8008.571031 C = 8558.989979 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.100 3.900 3 C -0.200 4.200 4 O -0.294 6.294 5 C 0.115 3.885 6 C -0.164 4.164 7 C -0.086 4.086 8 C -0.160 4.160 9 C -0.103 4.103 10 C -0.205 4.205 11 C 0.505 3.495 12 O -0.507 6.507 13 N -1.031 6.031 14 S 2.600 3.400 15 O -0.958 6.958 16 O -0.967 6.967 17 C -0.581 4.581 18 C -0.014 4.014 19 C -0.531 4.531 20 H 0.046 0.954 21 C 0.015 3.985 22 N -0.939 5.939 23 Si 0.927 3.073 24 H -0.264 1.264 25 H -0.270 1.270 26 H -0.244 1.244 27 H 0.110 0.890 28 H 0.116 0.884 29 H 0.068 0.932 30 H 0.074 0.926 31 H 0.107 0.893 32 H 0.111 0.889 33 H 0.143 0.857 34 H 0.158 0.842 35 H 0.145 0.855 36 H 0.129 0.871 37 H 0.121 0.879 38 H 0.452 0.548 39 H 0.128 0.872 40 H 0.152 0.848 41 H 0.043 0.957 42 H 0.027 0.973 43 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.752 22.112 16.812 27.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C 0.056 3.944 3 C -0.257 4.257 4 O -0.208 6.208 5 C 0.071 3.929 6 C -0.182 4.182 7 C -0.104 4.104 8 C -0.178 4.178 9 C -0.121 4.121 10 C -0.224 4.224 11 C 0.292 3.708 12 O -0.379 6.379 13 N -0.801 5.801 14 S 2.697 3.303 15 O -0.948 6.948 16 O -0.958 6.958 17 C -0.713 4.713 18 C -0.053 4.053 19 C -0.570 4.570 20 H 0.064 0.936 21 C -0.184 4.184 22 N -0.578 5.578 23 Si 0.749 3.251 24 H -0.189 1.189 25 H -0.194 1.194 26 H -0.167 1.167 27 H 0.129 0.871 28 H 0.134 0.866 29 H 0.087 0.913 30 H 0.092 0.908 31 H 0.125 0.875 32 H 0.130 0.870 33 H 0.161 0.839 34 H 0.175 0.825 35 H 0.163 0.837 36 H 0.147 0.853 37 H 0.138 0.862 38 H 0.293 0.707 39 H 0.146 0.854 40 H 0.170 0.830 41 H 0.062 0.938 42 H 0.046 0.954 43 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 2.691 21.564 16.340 27.189 hybrid contribution -0.157 -0.688 -0.836 1.094 sum 2.534 20.876 15.504 26.126 Atomic orbital electron populations 1.22072 0.85678 1.05268 1.07112 1.22233 0.99108 0.92801 0.80252 1.22955 1.03931 0.91578 1.07203 1.86202 1.19497 1.73654 1.41410 1.19085 0.82249 0.96686 0.94885 1.20719 0.96394 1.04509 0.96597 1.21317 0.91852 0.97312 0.99914 1.21382 1.01244 1.01153 0.94057 1.21232 0.94387 0.98296 0.98178 1.21550 0.95320 1.06503 0.98978 1.22025 0.78065 0.84366 0.86356 1.91012 1.34559 1.26075 1.86215 1.54923 1.62444 1.42067 1.20622 1.05451 0.74867 0.77118 0.72817 1.93591 1.81332 1.68579 1.51337 1.93574 1.30907 1.86920 1.84352 1.30189 1.14548 1.18203 1.08372 1.19372 0.97185 0.95895 0.92832 1.21109 1.28330 0.97794 1.09761 0.93566 1.25890 0.97258 0.94533 1.00747 1.70009 1.45012 1.07045 1.35729 0.86005 0.79633 0.80433 0.79068 1.18923 1.19446 1.16747 0.87119 0.86555 0.91266 0.90779 0.87453 0.87033 0.83935 0.82473 0.83672 0.85292 0.86156 0.70706 0.85350 0.82988 0.93843 0.95436 0.91985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 8.78 71.98 0.63 -0.88 16 2 C 0.10 1.80 0.96 -11.54 -0.01 1.79 16 3 C -0.20 -2.40 8.10 71.98 0.58 -1.81 16 4 O -0.29 -7.08 9.62 -73.46 -0.71 -7.78 16 5 C 0.12 3.04 5.55 22.50 0.13 3.17 16 6 C -0.16 -3.77 9.99 22.37 0.22 -3.54 16 7 C -0.09 -1.71 10.04 22.26 0.22 -1.49 16 8 C -0.16 -3.39 10.04 22.28 0.22 -3.17 16 9 C -0.10 -2.60 10.04 22.25 0.22 -2.38 16 10 C -0.20 -5.61 5.59 22.37 0.13 -5.48 16 11 C 0.51 12.86 4.33 87.66 0.38 13.24 16 12 O -0.51 -17.99 12.01 24.24 0.29 -17.70 16 13 N -1.03 -22.22 5.31 -173.54 -0.92 -23.14 16 14 S 2.60 84.67 5.11 -56.49 -0.29 84.38 16 15 O -0.96 -32.53 18.08 -127.65 -2.31 -34.84 16 16 O -0.97 -38.83 17.04 -120.71 -2.06 -40.89 16 17 C -0.58 -22.03 5.82 71.98 0.42 -21.61 16 18 C -0.01 -0.66 4.05 29.85 0.12 -0.54 16 19 C -0.53 -30.82 9.66 25.60 0.25 -30.57 16 20 H 0.05 2.88 7.99 -2.91 -0.02 2.86 16 21 C 0.01 0.86 5.47 84.65 0.46 1.32 16 22 N -0.94 -58.52 13.96 21.45 0.30 -58.22 16 23 Si 0.93 44.20 27.47 68.60 1.88 46.08 16 24 H -0.26 -12.28 7.11 99.48 0.71 -11.57 16 25 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 26 H -0.24 -10.83 6.54 99.48 0.65 -10.18 16 27 H 0.11 0.68 8.14 -2.39 -0.02 0.66 16 28 H 0.12 0.50 7.43 -2.39 -0.02 0.48 16 29 H 0.07 0.93 8.14 -2.38 -0.02 0.91 16 30 H 0.07 1.19 4.68 -2.39 -0.01 1.18 16 31 H 0.11 0.68 7.37 -2.39 -0.02 0.66 16 32 H 0.11 0.83 8.13 -2.39 -0.02 0.81 16 33 H 0.14 2.73 8.06 -2.91 -0.02 2.71 16 34 H 0.16 2.05 8.06 -2.91 -0.02 2.03 16 35 H 0.15 2.27 8.06 -2.91 -0.02 2.24 16 36 H 0.13 2.94 8.06 -2.91 -0.02 2.92 16 37 H 0.12 3.26 3.78 -2.91 -0.01 3.24 16 38 H 0.45 5.00 7.49 -96.75 -0.72 4.28 16 39 H 0.13 5.10 7.19 -2.39 -0.02 5.08 16 40 H 0.15 4.87 8.14 -2.39 -0.02 4.85 16 41 H 0.04 1.99 7.20 -2.39 -0.02 1.97 16 42 H 0.03 1.32 7.57 -2.38 -0.02 1.31 16 43 H 0.27 15.67 8.31 -92.71 -0.77 14.90 16 Total: -1.00 -84.72 361.58 0.44 -84.29 By element: Atomic # 1 Polarization: 19.51 SS G_CDS: 0.26 Total: 19.78 kcal Atomic # 6 Polarization: -55.93 SS G_CDS: 3.98 Total: -51.95 kcal Atomic # 7 Polarization: -80.74 SS G_CDS: -0.62 Total: -81.36 kcal Atomic # 8 Polarization: -96.43 SS G_CDS: -4.78 Total: -101.21 kcal Atomic # 14 Polarization: 44.20 SS G_CDS: 1.88 Total: 46.08 kcal Atomic # 16 Polarization: 84.67 SS G_CDS: -0.29 Total: 84.38 kcal Total: -84.72 0.44 -84.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320639952.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.237 kcal (2) G-P(sol) polarization free energy of solvation -84.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.436 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.526 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds