Wall clock time and date at job start Sat Apr 11 2020 06:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47110 * 226.21234 * 3 2 1 5 5 C 1.37092 * 120.00192 * 264.14666 * 4 3 2 6 6 H 1.08002 * 119.99857 * 197.43858 * 5 4 3 7 7 C 1.38954 * 120.00024 * 17.43082 * 5 4 3 8 8 N 1.31407 * 120.00064 * 21.52494 * 7 5 4 9 9 Si 1.86807 * 119.99861 * 201.52790 * 7 5 4 10 10 H 1.48497 * 109.46955 * 89.99923 * 9 7 5 11 11 H 1.48501 * 109.46890 * 210.00163 * 9 7 5 12 12 H 1.48500 * 109.46851 * 330.00011 * 9 7 5 13 13 C 1.34782 * 119.99520 * 84.14152 * 4 3 2 14 14 O 1.21288 * 119.99422 * 180.02562 * 13 4 3 15 15 C 1.50699 * 120.00140 * 0.02562 * 13 4 3 16 16 N 1.46500 * 109.46771 * 179.97438 * 15 13 4 17 17 N 1.39994 * 126.02990 * 89.97564 * 16 15 13 18 18 C 1.30736 * 108.21484 * 180.02562 * 17 16 15 19 19 C 1.50701 * 125.88176 * 180.02562 * 18 17 16 20 20 F 1.39907 * 109.47194 * 5.02137 * 19 18 17 21 21 F 1.39897 * 109.47249 * 125.02346 * 19 18 17 22 22 F 1.39906 * 109.46962 * 245.02616 * 19 18 17 23 23 C 1.40169 * 108.24053 * 0.26377 * 18 17 16 24 24 C 1.35136 * 107.86033 * 359.56287 * 23 18 17 25 25 C 1.51318 * 110.30922 * 180.24797 * 24 23 18 26 26 C 1.54441 * 104.99083 * 17.20256 * 25 24 23 27 27 C 1.51368 * 141.89231 * 180.59346 * 23 18 17 28 28 H 4.40644 * 5.51381 * 179.97438 * 4 1 2 29 29 H 1.09003 * 109.46512 * 106.21572 * 3 2 1 30 30 H 1.09000 * 109.47106 * 346.21936 * 3 2 1 31 31 H 0.96999 * 119.99742 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.47109 * 60.00093 * 15 13 4 33 33 H 1.09000 * 109.46775 * 299.99921 * 15 13 4 34 34 H 1.09004 * 110.33777 * 136.07337 * 25 24 23 35 35 H 1.09000 * 110.34188 * 258.21796 * 25 24 23 36 36 H 1.08996 * 110.92915 * 92.44882 * 26 25 24 37 37 H 1.09000 * 110.92978 * 216.10468 * 26 25 24 38 38 H 1.09001 * 110.48889 * 43.43125 * 27 23 18 39 39 H 1.08996 * 110.19759 * 281.29136 * 27 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1340 0.9567 0.9971 5 6 3.4761 2.2287 0.6173 6 1 4.0883 2.8392 1.2644 7 6 3.0352 2.7325 -0.6004 8 7 1.9841 2.2058 -1.1875 9 14 3.9367 4.1584 -1.4027 10 1 5.0052 3.6322 -2.2897 11 1 2.9787 4.9614 -2.2043 12 1 4.5428 5.0149 -0.3519 13 6 3.2464 0.5855 2.2879 14 8 3.6499 1.3771 3.1135 15 6 2.8708 -0.8130 2.7053 16 7 3.0815 -0.9654 4.1471 17 7 2.1381 -0.7082 5.1489 18 6 2.6924 -0.9583 6.3062 19 6 2.0301 -0.8147 7.6523 20 9 0.6834 -0.4790 7.4760 21 9 2.1218 -2.0247 8.3485 22 9 2.6703 0.1929 8.3818 23 6 4.0106 -1.3776 6.0798 24 6 4.2217 -1.3787 4.7450 25 6 5.6326 -1.8307 4.4368 26 6 6.1207 -2.5246 5.7273 27 6 5.2552 -1.8392 6.8072 28 1 -1.0501 -0.0001 -0.0003 29 1 3.0092 0.2878 -0.9868 30 1 3.0099 -0.9973 0.2448 31 1 1.6762 2.5577 -2.0373 32 1 3.4918 -1.5311 2.1698 33 1 1.8218 -0.9929 2.4700 34 1 5.6315 -2.5353 3.6051 35 1 6.2631 -0.9725 4.2046 36 1 5.9229 -3.5959 5.6921 37 1 7.1799 -2.3311 5.8967 38 1 4.9968 -2.5494 7.5926 39 1 5.7832 -0.9842 7.2295 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001338994873.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:30 Heat of formation + Delta-G solvation = -23.053285 kcal Electronic energy + Delta-G solvation = -29912.044575 eV Core-core repulsion = 25216.442730 eV Total energy + Delta-G solvation = -4695.601845 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.109 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -50.03627 -47.57606 -47.52199 -41.70888 -38.83105 -36.39681 -35.40311 -33.45056 -32.23854 -31.41070 -29.06379 -28.33525 -27.63554 -26.66173 -25.57477 -24.08854 -21.71835 -20.74587 -20.07720 -19.20596 -18.44135 -18.13730 -17.96552 -17.42707 -16.97418 -16.59064 -15.98253 -15.59497 -14.89490 -14.61665 -14.45778 -14.36654 -14.14959 -13.97194 -13.83395 -13.68547 -13.68415 -13.54005 -13.02582 -12.98210 -12.82712 -12.63659 -12.52903 -12.34901 -11.93867 -11.71246 -11.50725 -11.26274 -11.15545 -11.12116 -10.65661 -10.61140 -10.45161 -9.69054 -9.48559 -9.43982 -9.07733 -8.68147 -8.18659 -8.07129 -6.49765 -4.03453 1.70882 2.04722 2.40295 2.85526 3.03014 3.17103 3.21380 3.42472 3.68807 3.76280 3.86834 4.04004 4.11014 4.22440 4.48825 4.53692 4.65439 4.78748 4.89827 4.95943 5.06584 5.22397 5.28478 5.35393 5.52169 5.57473 5.66458 5.72542 5.74668 5.87301 6.04279 6.08900 6.10513 6.38232 6.54147 6.86707 6.96644 7.41457 7.53431 7.81331 8.21957 8.64875 8.92622 9.12793 9.63357 10.50486 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.014629 B = 0.003323 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.584133 B = 8423.271650 C = 8905.570688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.127 4.127 3 C 0.228 3.772 4 N -0.429 5.429 5 C -0.317 4.317 6 H 0.106 0.894 7 C 0.035 3.965 8 N -0.857 5.857 9 Si 0.925 3.075 10 H -0.276 1.276 11 H -0.284 1.284 12 H -0.269 1.269 13 C 0.429 3.571 14 O -0.565 6.565 15 C 0.113 3.887 16 N -0.301 5.301 17 N -0.218 5.218 18 C -0.007 4.007 19 C 0.557 3.443 20 F -0.169 7.169 21 F -0.171 7.171 22 F -0.168 7.168 23 C -0.230 4.230 24 C 0.078 3.922 25 C -0.048 4.048 26 C -0.111 4.111 27 C -0.043 4.043 28 H 0.201 0.799 29 H 0.115 0.885 30 H 0.061 0.939 31 H 0.271 0.729 32 H 0.112 0.888 33 H 0.117 0.883 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.077 0.923 37 H 0.084 0.916 38 H 0.072 0.928 39 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.087 -12.533 8.533 15.992 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.264 4.264 2 C -0.128 4.128 3 C 0.105 3.895 4 N -0.148 5.148 5 C -0.444 4.444 6 H 0.124 0.876 7 C -0.171 4.171 8 N -0.494 5.494 9 Si 0.751 3.249 10 H -0.201 1.201 11 H -0.209 1.209 12 H -0.193 1.193 13 C 0.215 3.785 14 O -0.447 6.447 15 C -0.012 4.012 16 N -0.082 5.082 17 N -0.042 5.042 18 C -0.172 4.172 19 C 0.501 3.499 20 F -0.150 7.150 21 F -0.152 7.152 22 F -0.150 7.150 23 C -0.242 4.242 24 C -0.050 4.050 25 C -0.087 4.087 26 C -0.149 4.149 27 C -0.082 4.082 28 H 0.218 0.782 29 H 0.133 0.867 30 H 0.079 0.921 31 H 0.081 0.919 32 H 0.130 0.870 33 H 0.135 0.865 34 H 0.099 0.901 35 H 0.113 0.887 36 H 0.095 0.905 37 H 0.103 0.897 38 H 0.091 0.909 39 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 4.090 -11.669 8.023 14.740 hybrid contribution 0.226 0.768 -0.260 0.842 sum 4.316 -10.901 7.763 14.062 Atomic orbital electron populations 1.24362 0.95453 1.04051 1.02572 1.23079 0.94301 0.97010 0.98448 1.18332 0.84499 0.90457 0.96187 1.43706 1.55295 1.11810 1.04002 1.19691 1.30470 0.90773 1.03509 0.87610 1.25331 0.94992 0.99000 0.97746 1.70082 1.19317 1.42345 1.17690 0.85948 0.79135 0.80607 0.79228 1.20136 1.20935 1.19306 1.19955 0.86459 0.88814 0.83239 1.90609 1.50568 1.53433 1.50118 1.21825 1.05317 0.99293 0.74756 1.47551 1.07196 1.47833 1.05594 1.77409 1.13888 1.19075 0.93793 1.21342 0.94577 1.08533 0.92768 1.16916 0.75997 0.73911 0.83083 1.93228 1.34067 1.92274 1.95440 1.93199 1.96004 1.45321 1.80684 1.93227 1.81809 1.60989 1.78955 1.20410 0.94719 1.13997 0.95049 1.21752 0.91344 0.99050 0.92871 1.20793 0.87558 1.00942 0.99360 1.22349 0.99821 0.99795 0.92937 1.20449 0.90732 0.99852 0.97127 0.78181 0.86705 0.92089 0.91852 0.86991 0.86497 0.90088 0.88688 0.90477 0.89726 0.90891 0.90447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.25 -4.83 19.25 29.55 0.57 -4.26 16 2 C -0.13 -2.65 10.88 -37.12 -0.40 -3.06 16 3 C 0.23 4.58 4.91 -6.83 -0.03 4.55 16 4 N -0.43 -10.15 2.60 -117.93 -0.31 -10.46 16 5 C -0.32 -8.33 9.33 -14.93 -0.14 -8.47 16 6 H 0.11 2.97 7.39 -52.49 -0.39 2.58 16 7 C 0.03 0.86 4.87 -17.47 -0.08 0.78 16 8 N -0.86 -21.43 9.48 55.50 0.53 -20.90 16 9 Si 0.92 19.66 29.60 -169.99 -5.03 14.62 16 10 H -0.28 -5.67 7.11 56.52 0.40 -5.26 16 11 H -0.28 -6.05 7.11 56.52 0.40 -5.64 16 12 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 13 C 0.43 9.94 7.63 -10.98 -0.08 9.86 16 14 O -0.56 -15.48 16.08 5.55 0.09 -15.39 16 15 C 0.11 2.02 5.53 -5.19 -0.03 1.99 16 16 N -0.30 -5.64 3.11 -58.08 -0.18 -5.82 16 17 N -0.22 -4.39 12.34 33.72 0.42 -3.97 16 18 C -0.01 -0.12 6.51 -82.33 -0.54 -0.66 16 19 C 0.56 8.74 3.51 36.01 0.13 8.87 16 20 F -0.17 -2.78 17.14 2.25 0.04 -2.74 16 21 F -0.17 -2.37 17.30 2.25 0.04 -2.33 16 22 F -0.17 -2.61 17.30 2.25 0.04 -2.57 16 23 C -0.23 -3.61 6.83 -104.67 -0.72 -4.33 16 24 C 0.08 1.26 7.57 -81.90 -0.62 0.64 16 25 C -0.05 -0.54 6.79 -26.82 -0.18 -0.72 16 26 C -0.11 -0.97 7.13 -25.22 -0.18 -1.15 16 27 C -0.04 -0.48 6.78 -26.80 -0.18 -0.67 16 28 H 0.20 3.23 7.80 -54.09 -0.42 2.81 16 29 H 0.12 2.43 6.44 -51.93 -0.33 2.10 16 30 H 0.06 0.94 6.69 -51.93 -0.35 0.60 16 31 H 0.27 6.49 8.31 -40.82 -0.34 6.15 16 32 H 0.11 1.53 7.42 -51.93 -0.39 1.14 16 33 H 0.12 2.05 7.51 -51.93 -0.39 1.66 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 35 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.08 0.56 8.14 -51.93 -0.42 0.14 16 38 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 39 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 354.17 15.07 5.34 5.34 Total: -1.00 -32.69 354.17 -5.46 -38.15 By element: Atomic # 1 Polarization: 6.63 SS G_CDS: -3.94 Total: 2.69 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: -2.49 Total: 3.37 kcal Atomic # 7 Polarization: -41.60 SS G_CDS: 0.46 Total: -41.15 kcal Atomic # 8 Polarization: -15.48 SS G_CDS: 0.09 Total: -15.39 kcal Atomic # 9 Polarization: -7.76 SS G_CDS: 0.12 Total: -7.64 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.03 Total: 14.62 kcal Total LS contribution 5.34 Total: 5.34 kcal Total: -32.69 -5.46 -38.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338994873.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.100 kcal (2) G-P(sol) polarization free energy of solvation -32.689 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.465 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.053 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds