Wall clock time and date at job start Sat Apr 11 2020 06:17:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17405 * 1 3 3 C 1.47203 * 179.97438 * 2 1 4 4 N 1.46498 * 109.47110 * 226.21234 * 3 2 1 5 5 C 1.37092 * 120.00192 * 264.14666 * 4 3 2 6 6 H 1.08002 * 119.99857 * 197.43858 * 5 4 3 7 7 C 1.38954 * 120.00024 * 17.43082 * 5 4 3 8 8 N 1.31407 * 120.00064 * 21.52494 * 7 5 4 9 9 Si 1.86807 * 119.99861 * 201.52790 * 7 5 4 10 10 H 1.48497 * 109.46955 * 89.99923 * 9 7 5 11 11 H 1.48501 * 109.46890 * 210.00163 * 9 7 5 12 12 H 1.48500 * 109.46851 * 330.00011 * 9 7 5 13 13 C 1.34782 * 119.99520 * 84.14152 * 4 3 2 14 14 O 1.21288 * 119.99422 * 180.02562 * 13 4 3 15 15 C 1.50699 * 120.00140 * 0.02562 * 13 4 3 16 16 N 1.46500 * 109.46771 * 179.97438 * 15 13 4 17 17 N 1.39994 * 126.02990 * 89.97564 * 16 15 13 18 18 C 1.30736 * 108.21484 * 180.02562 * 17 16 15 19 19 C 1.50701 * 125.88176 * 180.02562 * 18 17 16 20 20 F 1.39907 * 109.47194 * 5.02137 * 19 18 17 21 21 F 1.39897 * 109.47249 * 125.02346 * 19 18 17 22 22 F 1.39906 * 109.46962 * 245.02616 * 19 18 17 23 23 C 1.40169 * 108.24053 * 0.26377 * 18 17 16 24 24 C 1.35136 * 107.86033 * 359.56287 * 23 18 17 25 25 C 1.51318 * 110.30922 * 180.24797 * 24 23 18 26 26 C 1.54441 * 104.99083 * 17.20256 * 25 24 23 27 27 C 1.51368 * 141.89231 * 180.59346 * 23 18 17 28 28 H 4.40644 * 5.51381 * 179.97438 * 4 1 2 29 29 H 1.09003 * 109.46512 * 106.21572 * 3 2 1 30 30 H 1.09000 * 109.47106 * 346.21936 * 3 2 1 31 31 H 0.96999 * 119.99742 * 179.97438 * 8 7 5 32 32 H 1.09000 * 109.47109 * 60.00093 * 15 13 4 33 33 H 1.09000 * 109.46775 * 299.99921 * 15 13 4 34 34 H 1.09004 * 110.33777 * 136.07337 * 25 24 23 35 35 H 1.09000 * 110.34188 * 258.21796 * 25 24 23 36 36 H 1.08996 * 110.92915 * 92.44882 * 26 25 24 37 37 H 1.09000 * 110.92978 * 216.10468 * 26 25 24 38 38 H 1.09001 * 110.48889 * 43.43125 * 27 23 18 39 39 H 1.08996 * 110.19759 * 281.29136 * 27 23 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6461 0.0007 0.0000 4 7 3.1340 0.9567 0.9971 5 6 3.4761 2.2287 0.6173 6 1 4.0883 2.8392 1.2644 7 6 3.0352 2.7325 -0.6004 8 7 1.9841 2.2058 -1.1875 9 14 3.9367 4.1584 -1.4027 10 1 5.0052 3.6322 -2.2897 11 1 2.9787 4.9614 -2.2043 12 1 4.5428 5.0149 -0.3519 13 6 3.2464 0.5855 2.2879 14 8 3.6499 1.3771 3.1135 15 6 2.8708 -0.8130 2.7053 16 7 3.0815 -0.9654 4.1471 17 7 2.1381 -0.7082 5.1489 18 6 2.6924 -0.9583 6.3062 19 6 2.0301 -0.8147 7.6523 20 9 0.6834 -0.4790 7.4760 21 9 2.1218 -2.0247 8.3485 22 9 2.6703 0.1929 8.3818 23 6 4.0106 -1.3776 6.0798 24 6 4.2217 -1.3787 4.7450 25 6 5.6326 -1.8307 4.4368 26 6 6.1207 -2.5246 5.7273 27 6 5.2552 -1.8392 6.8072 28 1 -1.0501 -0.0001 -0.0003 29 1 3.0092 0.2878 -0.9868 30 1 3.0099 -0.9973 0.2448 31 1 1.6762 2.5577 -2.0373 32 1 3.4918 -1.5311 2.1698 33 1 1.8218 -0.9929 2.4700 34 1 5.6315 -2.5353 3.6051 35 1 6.2631 -0.9725 4.2046 36 1 5.9229 -3.5959 5.6921 37 1 7.1799 -2.3311 5.8967 38 1 4.9968 -2.5494 7.5926 39 1 5.7832 -0.9842 7.2295 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001338994873.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:29 Heat of formation + Delta-G solvation = -42.075392 kcal Electronic energy + Delta-G solvation = -29912.869436 eV Core-core repulsion = 25216.442730 eV Total energy + Delta-G solvation = -4696.426705 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 341.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -51.28505 -48.80504 -48.78554 -42.93644 -40.58328 -37.45688 -37.13533 -34.88174 -33.99524 -33.12325 -30.40715 -29.43883 -28.64523 -28.32145 -27.11016 -25.66913 -22.73787 -22.05236 -21.32775 -20.67358 -19.79255 -19.68428 -19.28706 -18.67154 -18.56234 -18.23324 -17.31569 -16.84404 -16.46969 -16.25453 -15.83225 -15.66529 -15.61458 -15.21689 -15.18150 -14.93827 -14.93235 -14.81351 -14.39770 -14.35776 -14.02605 -13.86199 -13.72457 -13.66872 -13.56507 -13.36839 -12.82863 -12.66504 -12.52454 -12.20965 -12.04190 -11.99996 -11.71861 -11.27714 -11.26045 -11.01271 -10.69830 -10.32647 -9.94111 -9.42361 -8.39580 -6.01266 0.38520 0.78934 1.21142 1.31310 1.41386 1.51337 1.60545 1.72828 2.04684 2.27214 2.32764 2.51299 2.86419 2.94814 2.98851 3.19394 3.25245 3.58379 3.63089 3.74880 3.88580 4.00015 4.15605 4.21604 4.28519 4.55316 4.64202 4.69379 4.82228 4.91875 4.94341 5.07681 5.14623 5.31023 5.36716 5.40427 5.41396 5.73811 5.96658 6.24723 6.33732 7.03860 7.08185 7.27445 7.80824 8.58121 Molecular weight = 341.11amu Principal moments of inertia in cm(-1) A = 0.014629 B = 0.003323 C = 0.003143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1913.584133 B = 8423.271650 C = 8905.570688 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.160 4.160 3 C 0.228 3.772 4 N -0.438 5.438 5 C -0.353 4.353 6 H 0.073 0.927 7 C 0.009 3.991 8 N -0.866 5.866 9 Si 0.984 3.016 10 H -0.258 1.258 11 H -0.279 1.279 12 H -0.282 1.282 13 C 0.422 3.578 14 O -0.620 6.620 15 C 0.125 3.875 16 N -0.318 5.318 17 N -0.271 5.271 18 C -0.020 4.020 19 C 0.563 3.437 20 F -0.176 7.176 21 F -0.157 7.157 22 F -0.168 7.168 23 C -0.242 4.242 24 C 0.068 3.932 25 C -0.049 4.049 26 C -0.096 4.096 27 C -0.046 4.046 28 H 0.229 0.771 29 H 0.101 0.899 30 H 0.110 0.890 31 H 0.275 0.725 32 H 0.160 0.840 33 H 0.120 0.880 34 H 0.108 0.892 35 H 0.089 0.911 36 H 0.097 0.903 37 H 0.112 0.888 38 H 0.088 0.912 39 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.325 -14.537 8.083 17.795 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.260 4.260 2 C -0.161 4.161 3 C 0.106 3.894 4 N -0.155 5.155 5 C -0.480 4.480 6 H 0.091 0.909 7 C -0.195 4.195 8 N -0.502 5.502 9 Si 0.808 3.192 10 H -0.183 1.183 11 H -0.204 1.204 12 H -0.207 1.207 13 C 0.210 3.790 14 O -0.506 6.506 15 C 0.001 3.999 16 N -0.098 5.098 17 N -0.095 5.095 18 C -0.185 4.185 19 C 0.507 3.493 20 F -0.157 7.157 21 F -0.139 7.139 22 F -0.150 7.150 23 C -0.253 4.253 24 C -0.060 4.060 25 C -0.088 4.088 26 C -0.134 4.134 27 C -0.084 4.084 28 H 0.246 0.754 29 H 0.119 0.881 30 H 0.128 0.872 31 H 0.085 0.915 32 H 0.178 0.822 33 H 0.137 0.863 34 H 0.126 0.874 35 H 0.107 0.893 36 H 0.116 0.884 37 H 0.130 0.870 38 H 0.107 0.893 39 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges 5.313 -13.712 7.553 16.532 hybrid contribution -0.208 1.410 -0.081 1.428 sum 5.105 -12.302 7.472 15.272 Atomic orbital electron populations 1.25181 0.96478 1.02945 1.01374 1.23462 0.95072 0.98061 0.99549 1.18508 0.84363 0.91828 0.94692 1.43874 1.55002 1.11605 1.05057 1.19519 1.31879 0.92344 1.04246 0.90914 1.25948 0.95233 1.00982 0.97364 1.70165 1.19397 1.42970 1.17692 0.85086 0.78393 0.77740 0.78007 1.18290 1.20439 1.20696 1.20814 0.84999 0.90631 0.82548 1.90562 1.52809 1.55688 1.51575 1.21768 1.06280 0.96552 0.75346 1.47633 1.08109 1.48630 1.05477 1.77298 1.15870 1.21335 0.95020 1.21742 0.95826 1.08109 0.92794 1.16768 0.75546 0.74280 0.82745 1.93209 1.34629 1.92401 1.95497 1.93218 1.95912 1.44451 1.80281 1.93223 1.81781 1.61121 1.78830 1.21087 0.95032 1.13207 0.95977 1.22733 0.92244 0.97796 0.93212 1.21085 0.84339 1.01483 1.01922 1.22407 1.00680 1.00331 0.89967 1.20661 0.89050 1.00533 0.98142 0.75393 0.88118 0.87220 0.91526 0.82244 0.86254 0.87409 0.89299 0.88439 0.86995 0.89301 0.90255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.24 -9.20 19.25 74.32 1.43 -7.76 16 2 C -0.16 -6.56 10.88 31.13 0.34 -6.22 16 3 C 0.23 8.97 4.91 84.58 0.42 9.38 16 4 N -0.44 -20.98 2.60 -645.41 -1.68 -22.65 16 5 C -0.35 -19.09 9.33 84.04 0.78 -18.31 16 6 H 0.07 4.33 7.39 -2.91 -0.02 4.31 16 7 C 0.01 0.47 4.87 84.93 0.41 0.88 16 8 N -0.87 -43.11 9.48 21.66 0.21 -42.91 16 9 Si 0.98 40.53 29.60 68.60 2.03 42.56 16 10 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 11 H -0.28 -11.23 7.11 99.48 0.71 -10.52 16 12 H -0.28 -12.12 7.11 99.48 0.71 -11.42 16 13 C 0.42 19.91 7.63 87.66 0.67 20.58 16 14 O -0.62 -35.48 16.08 -3.06 -0.05 -35.53 16 15 C 0.12 4.38 5.53 85.63 0.47 4.85 16 16 N -0.32 -11.83 3.11 -337.65 -1.05 -12.88 16 17 N -0.27 -11.17 12.34 -47.25 -0.58 -11.75 16 18 C -0.02 -0.71 6.51 43.19 0.28 -0.43 16 19 C 0.56 17.73 3.51 71.24 0.25 17.98 16 20 F -0.18 -5.92 17.14 44.97 0.77 -5.15 16 21 F -0.16 -4.24 17.30 44.97 0.78 -3.46 16 22 F -0.17 -5.23 17.30 44.97 0.78 -4.45 16 23 C -0.24 -7.35 6.83 -19.90 -0.14 -7.49 16 24 C 0.07 2.11 7.57 41.52 0.31 2.43 16 25 C -0.05 -0.98 6.79 30.53 0.21 -0.77 16 26 C -0.10 -1.29 7.13 31.57 0.22 -1.07 16 27 C -0.05 -0.91 6.78 30.55 0.21 -0.70 16 28 H 0.23 6.91 7.80 -4.41 -0.03 6.87 16 29 H 0.10 4.22 6.44 -2.39 -0.02 4.21 16 30 H 0.11 3.12 6.69 -2.39 -0.02 3.11 16 31 H 0.27 12.96 8.31 -92.71 -0.77 12.19 16 32 H 0.16 3.90 7.42 -2.39 -0.02 3.88 16 33 H 0.12 4.11 7.51 -2.39 -0.02 4.09 16 34 H 0.11 1.56 8.14 -2.38 -0.02 1.54 16 35 H 0.09 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 37 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 38 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 39 H 0.08 1.55 8.14 -2.39 -0.02 1.53 16 Total: -1.00 -75.21 354.17 8.19 -67.02 By element: Atomic # 1 Polarization: 14.73 SS G_CDS: 1.11 Total: 15.84 kcal Atomic # 6 Polarization: 7.48 SS G_CDS: 5.87 Total: 13.35 kcal Atomic # 7 Polarization: -87.09 SS G_CDS: -3.10 Total: -90.19 kcal Atomic # 8 Polarization: -35.48 SS G_CDS: -0.05 Total: -35.53 kcal Atomic # 9 Polarization: -15.39 SS G_CDS: 2.33 Total: -13.06 kcal Atomic # 14 Polarization: 40.53 SS G_CDS: 2.03 Total: 42.56 kcal Total: -75.21 8.19 -67.02 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001338994873.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.946 kcal (2) G-P(sol) polarization free energy of solvation -75.209 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 8.188 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds