Wall clock time and date at job start Sat Apr 11 2020 06:17:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47210 * 2 1 4 4 C 1.53001 * 109.47210 * 179.97438 * 3 2 1 5 5 O 1.45196 * 109.47128 * 179.97438 * 4 3 2 6 6 C 1.34225 * 117.00374 * 180.02562 * 5 4 3 7 7 O 1.20833 * 119.99772 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.00469 * 179.97438 * 6 5 4 9 9 N 1.46503 * 109.46897 * 179.97438 * 8 6 5 10 10 S 1.65600 * 119.99765 * 164.72835 * 9 8 6 11 11 O 1.42094 * 106.40512 * 178.53760 * 10 9 8 12 12 O 1.42106 * 106.40226 * 311.45618 * 10 9 8 13 13 C 1.76198 * 107.22067 * 64.99582 * 10 9 8 14 14 C 1.38640 * 119.75037 * 269.72949 * 13 10 9 15 15 C 1.37618 * 120.24754 * 179.72238 * 14 13 10 16 16 C 1.40708 * 119.74303 * 0.56852 * 15 14 13 17 17 C 1.41395 * 120.24350 * 179.68190 * 16 15 14 18 18 H 1.07999 * 120.00421 * 204.40366 * 17 16 15 19 19 C 1.39948 * 120.00045 * 24.41232 * 17 16 15 20 20 N 1.30828 * 119.99938 * 17.83864 * 19 17 16 21 21 Si 1.86804 * 120.00206 * 197.84763 * 19 17 16 22 22 H 1.48497 * 109.46953 * 59.99362 * 21 19 17 23 23 H 1.48494 * 109.47057 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46965 * 299.99721 * 21 19 17 25 25 C 1.40718 * 119.51587 * 359.70656 * 16 15 14 26 26 C 1.37623 * 119.74191 * 359.97438 * 25 16 15 27 27 H 1.08998 * 109.47494 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47083 * 300.00321 * 1 2 3 29 29 H 1.09006 * 109.47095 * 59.99990 * 1 2 3 30 30 H 1.08997 * 109.47083 * 239.99678 * 2 1 3 31 31 H 1.08995 * 109.46752 * 119.99662 * 2 1 3 32 32 H 1.09001 * 109.47127 * 59.99405 * 3 2 1 33 33 H 1.09006 * 109.47100 * 300.00007 * 3 2 1 34 34 H 1.08997 * 109.47083 * 59.99678 * 4 3 2 35 35 H 1.08995 * 109.46752 * 299.99662 * 4 3 2 36 36 H 1.08997 * 109.46842 * 60.00010 * 8 6 5 37 37 H 1.08999 * 109.47198 * 299.99734 * 8 6 5 38 38 H 0.96997 * 120.00372 * 344.99540 * 9 8 6 39 39 H 1.08001 * 119.87510 * 359.97438 * 14 13 10 40 40 H 1.07997 * 120.12712 * 180.27635 * 15 14 13 41 41 H 0.96994 * 120.00050 * 180.02562 * 20 19 17 42 42 H 1.07995 * 120.13001 * 179.97438 * 25 16 15 43 43 H 1.07999 * 119.87507 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0540 2.8114 0.0000 6 6 5.3847 2.9874 0.0000 7 8 6.1208 2.0291 0.0009 8 6 5.9607 4.3799 -0.0013 9 7 7.4237 4.3032 -0.0005 10 16 8.3232 5.6410 -0.3792 11 8 9.6856 5.2565 -0.2567 12 8 7.7698 6.1709 -1.5760 13 6 8.0297 6.8400 0.8781 14 6 6.9960 7.7522 0.7310 15 6 6.7540 8.6893 1.7093 16 6 7.5680 8.7271 2.8564 17 6 7.3331 9.6899 3.8650 18 1 8.1359 9.9911 4.5216 19 6 6.0601 10.2524 4.0125 20 7 5.0195 9.6646 3.4803 21 14 5.8468 11.8426 4.9692 22 1 6.6420 12.9184 4.3248 23 1 4.4122 12.2259 4.9787 24 1 6.3168 11.6477 6.3644 25 6 8.6179 7.8001 2.9924 26 6 8.8374 6.8674 2.0045 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6767 1.9564 -0.8900 34 1 3.9337 0.9285 -0.8891 35 1 3.9329 0.9289 0.8909 36 1 5.6247 4.9128 0.8882 37 1 5.6249 4.9113 -0.8917 38 1 7.8655 3.4678 0.2181 39 1 6.3758 7.7245 -0.1527 40 1 5.9455 9.3961 1.5948 41 1 4.1374 10.0546 3.5822 42 1 9.2490 7.8204 3.8685 43 1 9.6428 6.1552 2.1064 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001339856495.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:33 Heat of formation + Delta-G solvation = -166.657119 kcal Electronic energy + Delta-G solvation = -26697.174642 eV Core-core repulsion = 22640.353608 eV Total energy + Delta-G solvation = -4056.821034 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.60706 -37.61897 -37.21991 -36.56026 -35.30566 -35.19942 -34.59463 -34.07930 -30.30451 -30.06652 -29.50626 -27.44807 -25.86426 -23.94745 -21.58913 -21.54657 -21.23456 -21.07583 -19.20776 -17.87003 -17.64338 -17.22953 -17.08101 -16.77751 -16.08786 -15.69548 -15.52789 -15.28375 -14.42327 -14.22791 -14.12895 -14.03311 -13.48911 -13.29952 -13.25097 -13.06100 -12.44979 -12.38729 -12.22533 -12.12917 -11.85570 -11.70962 -11.59094 -11.50988 -11.44464 -11.41885 -11.32256 -11.26259 -11.14485 -10.93695 -10.69296 -10.60599 -10.47283 -9.85661 -9.73046 -9.53986 -9.22210 -8.01178 -7.74808 -7.19073 -4.84567 1.10509 2.06709 2.20617 2.46617 2.85508 2.86959 2.88807 2.92422 3.62809 3.63921 4.18773 4.31015 4.47916 4.50941 4.59471 4.78695 4.88892 5.04730 5.09610 5.14237 5.23365 5.34168 5.37706 5.40736 5.41693 5.52670 5.70351 5.81212 5.82818 5.91652 6.04421 6.08321 6.25472 6.64197 6.66787 6.86538 7.00544 7.19144 7.29958 7.38683 7.58457 7.60474 7.72929 7.92678 8.27290 8.46942 8.60613 9.72174 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009346 B = 0.002883 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2995.286635 B = 9710.028252 C =12127.055190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.122 4.122 3 C -0.122 4.122 4 C 0.066 3.934 5 O -0.353 6.353 6 C 0.466 3.534 7 O -0.505 6.505 8 C 0.131 3.869 9 N -1.120 6.120 10 S 2.697 3.303 11 O -0.978 6.978 12 O -0.981 6.981 13 C -0.790 4.790 14 C -0.019 4.019 15 C -0.182 4.182 16 C 0.139 3.861 17 C -0.433 4.433 18 H 0.088 0.912 19 C 0.072 3.928 20 N -0.764 5.764 21 Si 0.918 3.082 22 H -0.259 1.259 23 H -0.274 1.274 24 H -0.261 1.261 25 C -0.238 4.238 26 C 0.004 3.996 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.056 0.944 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.070 0.930 35 H 0.071 0.929 36 H 0.116 0.884 37 H 0.121 0.879 38 H 0.420 0.580 39 H 0.105 0.895 40 H 0.123 0.877 41 H 0.290 0.710 42 H 0.100 0.900 43 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.882 -11.319 -3.239 14.748 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.160 4.160 3 C -0.159 4.159 4 C -0.008 4.008 5 O -0.270 6.270 6 C 0.308 3.692 7 O -0.392 6.392 8 C 0.003 3.997 9 N -0.879 5.879 10 S 2.796 3.204 11 O -0.968 6.968 12 O -0.972 6.972 13 C -0.886 4.886 14 C -0.039 4.039 15 C -0.202 4.202 16 C 0.135 3.865 17 C -0.460 4.460 18 H 0.106 0.894 19 C -0.150 4.150 20 N -0.386 5.386 21 Si 0.741 3.259 22 H -0.183 1.183 23 H -0.199 1.199 24 H -0.186 1.186 25 C -0.259 4.259 26 C -0.017 4.017 27 H 0.075 0.925 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.083 0.917 31 H 0.084 0.916 32 H 0.095 0.905 33 H 0.094 0.906 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.133 0.867 37 H 0.139 0.861 38 H 0.255 0.745 39 H 0.123 0.877 40 H 0.141 0.859 41 H 0.101 0.899 42 H 0.118 0.882 43 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges -8.531 -11.451 -4.087 14.853 hybrid contribution -0.323 0.381 1.277 1.371 sum -8.854 -11.070 -2.810 14.451 Atomic orbital electron populations 1.21750 0.95094 1.01852 1.02214 1.21435 0.96468 0.95562 1.02506 1.21634 0.92279 0.97886 1.04123 1.23131 0.94987 0.79965 1.02736 1.86487 1.24055 1.32486 1.83928 1.23664 0.80757 0.92701 0.72102 1.90644 1.60371 1.42780 1.45428 1.20586 0.81302 0.91271 1.06508 1.55782 1.13152 1.29741 1.89271 1.01192 0.72296 0.72402 0.74489 1.93508 1.32370 1.83126 1.87837 1.93488 1.79698 1.78855 1.45115 1.29094 1.15586 1.23686 1.20257 1.20275 0.93309 0.93556 0.96781 1.21340 1.03327 1.01685 0.93839 1.17866 0.89189 0.88452 0.91003 1.19937 0.95840 1.17197 1.12991 0.89426 1.26141 0.95381 0.98434 0.95068 1.69797 1.00338 1.35609 1.32886 0.86184 0.78416 0.80875 0.80432 1.18326 1.19866 1.18556 1.21054 1.04433 1.00404 1.00014 1.20177 0.94202 0.95990 0.91289 0.92509 0.92440 0.92481 0.91651 0.91610 0.90477 0.90555 0.91135 0.91070 0.86672 0.86112 0.74464 0.87706 0.85887 0.89861 0.88162 0.87686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.85 9.91 37.16 0.37 -0.49 16 2 C -0.12 -0.76 5.93 -26.73 -0.16 -0.92 16 3 C -0.12 -0.93 5.59 -26.73 -0.15 -1.08 16 4 C 0.07 0.64 5.47 37.16 0.20 0.85 16 5 O -0.35 -4.30 10.22 -39.24 -0.40 -4.70 16 6 C 0.47 6.37 8.03 36.01 0.29 6.66 16 7 O -0.50 -7.88 15.48 -18.76 -0.29 -8.17 16 8 C 0.13 1.79 6.82 -5.19 -0.04 1.75 16 9 N -1.12 -17.30 5.93 -11.65 -0.07 -17.37 16 10 S 2.70 50.41 5.73 -107.50 -0.62 49.79 16 11 O -0.98 -20.41 17.26 -57.17 -0.99 -21.40 16 12 O -0.98 -20.00 16.72 -57.17 -0.96 -20.96 16 13 C -0.79 -16.63 5.97 -39.29 -0.23 -16.86 16 14 C -0.02 -0.41 9.49 -39.66 -0.38 -0.79 16 15 C -0.18 -4.34 8.70 -38.88 -0.34 -4.68 16 16 C 0.14 3.41 5.57 -106.83 -0.60 2.81 16 17 C -0.43 -10.30 9.05 -37.74 -0.34 -10.65 16 18 H 0.09 1.98 7.91 -52.49 -0.41 1.56 16 19 C 0.07 1.61 5.14 -17.34 -0.09 1.52 16 20 N -0.76 -17.42 10.95 55.55 0.61 -16.81 16 21 Si 0.92 16.55 29.60 -169.99 -5.03 11.52 16 22 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 23 H -0.27 -4.80 7.11 56.52 0.40 -4.40 16 24 H -0.26 -4.67 7.11 56.52 0.40 -4.26 16 25 C -0.24 -5.49 9.80 -38.87 -0.38 -5.87 16 26 C 0.00 0.08 9.49 -39.66 -0.38 -0.30 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.07 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.17 16 33 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.07 0.67 8.13 -51.93 -0.42 0.25 16 35 H 0.07 0.69 8.13 -51.93 -0.42 0.27 16 36 H 0.12 1.48 8.14 -51.93 -0.42 1.05 16 37 H 0.12 1.49 7.75 -51.93 -0.40 1.09 16 38 H 0.42 6.15 7.71 -34.47 -0.27 5.88 16 39 H 0.10 2.06 7.59 -52.49 -0.40 1.66 16 40 H 0.12 2.97 6.16 -52.49 -0.32 2.65 16 41 H 0.29 5.94 8.30 -40.82 -0.34 5.60 16 42 H 0.10 2.13 8.06 -52.49 -0.42 1.71 16 43 H 0.11 2.07 7.60 -52.49 -0.40 1.67 16 LS Contribution 380.64 15.07 5.74 5.74 Total: -1.00 -29.85 380.64 -10.21 -40.06 By element: Atomic # 1 Polarization: 16.33 SS G_CDS: -5.99 Total: 10.34 kcal Atomic # 6 Polarization: -25.82 SS G_CDS: -2.22 Total: -28.04 kcal Atomic # 7 Polarization: -34.72 SS G_CDS: 0.54 Total: -34.18 kcal Atomic # 8 Polarization: -52.59 SS G_CDS: -2.63 Total: -55.22 kcal Atomic # 14 Polarization: 16.55 SS G_CDS: -5.03 Total: 11.52 kcal Atomic # 16 Polarization: 50.41 SS G_CDS: -0.62 Total: 49.79 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -29.85 -10.21 -40.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339856495.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -126.602 kcal (2) G-P(sol) polarization free energy of solvation -29.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.448 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.209 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.055 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.657 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds