Wall clock time and date at job start Sat Apr 11 2020 06:17:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47210 * 2 1 4 4 C 1.53001 * 109.47210 * 179.97438 * 3 2 1 5 5 O 1.45196 * 109.47128 * 179.97438 * 4 3 2 6 6 C 1.34225 * 117.00374 * 180.02562 * 5 4 3 7 7 O 1.20833 * 119.99772 * 359.97438 * 6 5 4 8 8 C 1.50700 * 120.00469 * 179.97438 * 6 5 4 9 9 N 1.46503 * 109.46897 * 179.97438 * 8 6 5 10 10 S 1.65600 * 119.99765 * 164.72835 * 9 8 6 11 11 O 1.42094 * 106.40512 * 178.53760 * 10 9 8 12 12 O 1.42106 * 106.40226 * 311.45618 * 10 9 8 13 13 C 1.76198 * 107.22067 * 64.99582 * 10 9 8 14 14 C 1.38640 * 119.75037 * 269.72949 * 13 10 9 15 15 C 1.37618 * 120.24754 * 179.72238 * 14 13 10 16 16 C 1.40708 * 119.74303 * 0.56852 * 15 14 13 17 17 C 1.41395 * 120.24350 * 179.68190 * 16 15 14 18 18 H 1.07999 * 120.00421 * 204.40366 * 17 16 15 19 19 C 1.39948 * 120.00045 * 24.41232 * 17 16 15 20 20 N 1.30828 * 119.99938 * 17.83864 * 19 17 16 21 21 Si 1.86804 * 120.00206 * 197.84763 * 19 17 16 22 22 H 1.48497 * 109.46953 * 59.99362 * 21 19 17 23 23 H 1.48494 * 109.47057 * 179.97438 * 21 19 17 24 24 H 1.48499 * 109.46965 * 299.99721 * 21 19 17 25 25 C 1.40718 * 119.51587 * 359.70656 * 16 15 14 26 26 C 1.37623 * 119.74191 * 359.97438 * 25 16 15 27 27 H 1.08998 * 109.47494 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47083 * 300.00321 * 1 2 3 29 29 H 1.09006 * 109.47095 * 59.99990 * 1 2 3 30 30 H 1.08997 * 109.47083 * 239.99678 * 2 1 3 31 31 H 1.08995 * 109.46752 * 119.99662 * 2 1 3 32 32 H 1.09001 * 109.47127 * 59.99405 * 3 2 1 33 33 H 1.09006 * 109.47100 * 300.00007 * 3 2 1 34 34 H 1.08997 * 109.47083 * 59.99678 * 4 3 2 35 35 H 1.08995 * 109.46752 * 299.99662 * 4 3 2 36 36 H 1.08997 * 109.46842 * 60.00010 * 8 6 5 37 37 H 1.08999 * 109.47198 * 299.99734 * 8 6 5 38 38 H 0.96997 * 120.00372 * 344.99540 * 9 8 6 39 39 H 1.08001 * 119.87510 * 359.97438 * 14 13 10 40 40 H 1.07997 * 120.12712 * 180.27635 * 15 14 13 41 41 H 0.96994 * 120.00050 * 180.02562 * 20 19 17 42 42 H 1.07995 * 120.13001 * 179.97438 * 25 16 15 43 43 H 1.07999 * 119.87507 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 8 4.0540 2.8114 0.0000 6 6 5.3847 2.9874 0.0000 7 8 6.1208 2.0291 0.0009 8 6 5.9607 4.3799 -0.0013 9 7 7.4237 4.3032 -0.0005 10 16 8.3232 5.6410 -0.3792 11 8 9.6856 5.2565 -0.2567 12 8 7.7698 6.1709 -1.5760 13 6 8.0297 6.8400 0.8781 14 6 6.9960 7.7522 0.7310 15 6 6.7540 8.6893 1.7093 16 6 7.5680 8.7271 2.8564 17 6 7.3331 9.6899 3.8650 18 1 8.1359 9.9911 4.5216 19 6 6.0601 10.2524 4.0125 20 7 5.0195 9.6646 3.4803 21 14 5.8468 11.8426 4.9692 22 1 6.6420 12.9184 4.3248 23 1 4.4122 12.2259 4.9787 24 1 6.3168 11.6477 6.3644 25 6 8.6179 7.8001 2.9924 26 6 8.8374 6.8674 2.0045 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5139 -0.8900 30 1 1.8933 -0.5139 -0.8899 31 1 1.8933 -0.5138 0.8900 32 1 1.6766 1.9564 0.8899 33 1 1.6767 1.9564 -0.8900 34 1 3.9337 0.9285 -0.8891 35 1 3.9329 0.9289 0.8909 36 1 5.6247 4.9128 0.8882 37 1 5.6249 4.9113 -0.8917 38 1 7.8655 3.4678 0.2181 39 1 6.3758 7.7245 -0.1527 40 1 5.9455 9.3961 1.5948 41 1 4.1374 10.0546 3.5822 42 1 9.2490 7.8204 3.8685 43 1 9.6428 6.1552 2.1064 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001339856495.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:32 Heat of formation + Delta-G solvation = -184.369090 kcal Electronic energy + Delta-G solvation = -26697.942691 eV Core-core repulsion = 22640.353608 eV Total energy + Delta-G solvation = -4057.589082 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.65591 -39.35641 -38.26260 -38.10721 -36.82114 -35.95119 -35.86825 -35.74754 -32.04502 -31.25866 -30.77012 -28.52502 -27.60186 -24.64818 -23.29694 -22.92739 -22.32663 -21.96428 -20.60195 -19.40450 -19.18781 -18.44897 -18.33186 -17.90977 -17.51171 -17.19585 -16.62518 -16.31016 -15.83016 -15.72146 -15.19085 -15.02530 -14.89333 -14.69129 -14.20039 -14.10420 -14.02611 -13.90343 -13.57230 -13.20472 -13.12849 -13.04183 -13.03301 -12.89274 -12.87648 -12.86341 -12.57027 -12.31937 -12.00975 -12.00373 -11.77390 -11.64533 -11.52578 -11.43440 -11.36985 -11.20165 -10.61248 -9.77331 -9.51861 -8.85589 -6.62745 -0.41644 0.50090 0.99178 1.09574 1.37809 1.43945 1.47995 1.51365 2.13005 2.21790 2.53580 2.90927 3.42220 3.53823 3.59210 3.87848 3.88973 4.12587 4.16440 4.28184 4.32068 4.33764 4.36745 4.37580 4.55886 4.58400 4.84935 4.89683 4.90810 4.96935 4.98458 5.13147 5.16636 5.26634 5.30820 5.33811 5.44747 5.55183 5.62408 5.78617 5.93833 5.98307 6.18394 6.51498 6.55455 6.70668 6.83503 8.09005 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009346 B = 0.002883 C = 0.002308 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2995.286635 B = 9710.028252 C =12127.055190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.120 4.120 3 C -0.116 4.116 4 C 0.059 3.941 5 O -0.354 6.354 6 C 0.473 3.527 7 O -0.527 6.527 8 C 0.122 3.878 9 N -1.111 6.111 10 S 2.735 3.265 11 O -0.996 6.996 12 O -0.994 6.994 13 C -0.796 4.796 14 C -0.018 4.018 15 C -0.206 4.206 16 C 0.110 3.890 17 C -0.465 4.465 18 H 0.089 0.911 19 C 0.037 3.963 20 N -0.790 5.790 21 Si 0.988 3.012 22 H -0.260 1.260 23 H -0.263 1.263 24 H -0.257 1.257 25 C -0.258 4.258 26 C -0.002 4.002 27 H 0.063 0.937 28 H 0.056 0.944 29 H 0.057 0.943 30 H 0.070 0.930 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.071 0.929 36 H 0.125 0.875 37 H 0.138 0.862 38 H 0.426 0.574 39 H 0.125 0.875 40 H 0.114 0.886 41 H 0.299 0.701 42 H 0.108 0.892 43 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.828 -11.769 -3.422 15.710 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.154 4.154 4 C -0.014 4.014 5 O -0.270 6.270 6 C 0.315 3.685 7 O -0.416 6.416 8 C -0.005 4.005 9 N -0.873 5.873 10 S 2.831 3.169 11 O -0.987 6.987 12 O -0.984 6.984 13 C -0.890 4.890 14 C -0.038 4.038 15 C -0.226 4.226 16 C 0.107 3.893 17 C -0.491 4.491 18 H 0.107 0.893 19 C -0.183 4.183 20 N -0.413 5.413 21 Si 0.808 3.192 22 H -0.184 1.184 23 H -0.187 1.187 24 H -0.181 1.181 25 C -0.278 4.278 26 C -0.022 4.022 27 H 0.082 0.918 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.088 0.912 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.092 0.908 35 H 0.090 0.910 36 H 0.143 0.857 37 H 0.155 0.845 38 H 0.263 0.737 39 H 0.143 0.857 40 H 0.132 0.868 41 H 0.111 0.889 42 H 0.126 0.874 43 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -9.491 -11.894 -4.254 15.800 hybrid contribution -0.061 0.371 1.253 1.308 sum -9.551 -11.523 -3.001 15.265 Atomic orbital electron populations 1.21754 0.94540 1.02374 1.02250 1.21435 0.96890 0.94554 1.02887 1.21639 0.90618 0.98933 1.04179 1.23402 0.96302 0.78773 1.02959 1.86482 1.23063 1.34016 1.83437 1.23549 0.81144 0.92255 0.71537 1.90637 1.60938 1.43381 1.46653 1.20821 0.79988 0.91857 1.07843 1.55375 1.14098 1.28810 1.89015 1.00095 0.71602 0.71943 0.73294 1.93480 1.33968 1.83361 1.87867 1.93472 1.79921 1.79537 1.45438 1.29518 1.14660 1.24377 1.20413 1.20515 0.93527 0.92861 0.96870 1.21372 1.03824 1.02703 0.94698 1.18222 0.90068 0.89341 0.91712 1.20200 0.96925 1.18385 1.13616 0.89280 1.26935 0.94501 1.01124 0.95780 1.69816 1.00991 1.36889 1.33565 0.85139 0.78736 0.76423 0.78932 1.18427 1.18678 1.18084 1.21259 1.04727 1.00799 1.01028 1.20458 0.94665 0.95881 0.91184 0.91775 0.92537 0.92342 0.91171 0.91385 0.90621 0.90303 0.90785 0.91042 0.85739 0.84486 0.73683 0.85695 0.86832 0.88934 0.87357 0.85838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 9.91 71.98 0.71 -0.76 16 2 C -0.12 -1.31 5.93 30.59 0.18 -1.12 16 3 C -0.12 -1.60 5.59 30.59 0.17 -1.43 16 4 C 0.06 1.08 5.47 71.98 0.39 1.47 16 5 O -0.35 -8.12 10.22 -51.37 -0.53 -8.64 16 6 C 0.47 12.23 8.03 71.24 0.57 12.80 16 7 O -0.53 -15.77 15.48 21.94 0.34 -15.43 16 8 C 0.12 3.11 6.82 85.63 0.58 3.69 16 9 N -1.11 -32.40 5.93 -190.79 -1.13 -33.53 16 10 S 2.73 97.85 5.73 -56.49 -0.32 97.53 16 11 O -1.00 -40.02 17.26 -128.00 -2.21 -42.23 16 12 O -0.99 -38.62 16.72 -128.00 -2.14 -40.76 16 13 C -0.80 -32.85 5.97 22.46 0.13 -32.72 16 14 C -0.02 -0.77 9.49 22.22 0.21 -0.56 16 15 C -0.21 -10.00 8.70 22.73 0.20 -9.81 16 16 C 0.11 5.53 5.57 -21.29 -0.12 5.41 16 17 C -0.46 -22.60 9.05 23.46 0.21 -22.39 16 18 H 0.09 4.12 7.91 -2.91 -0.02 4.10 16 19 C 0.04 1.64 5.14 85.26 0.44 2.08 16 20 N -0.79 -36.29 10.95 21.83 0.24 -36.06 16 21 Si 0.99 33.56 29.60 68.60 2.03 35.59 16 22 H -0.26 -8.80 7.11 99.48 0.71 -8.10 16 23 H -0.26 -8.36 7.11 99.48 0.71 -7.65 16 24 H -0.26 -8.47 7.11 99.48 0.71 -7.77 16 25 C -0.26 -12.03 9.80 22.73 0.22 -11.81 16 26 C 0.00 -0.09 9.49 22.22 0.21 0.12 16 27 H 0.06 0.53 8.14 -2.39 -0.02 0.51 16 28 H 0.06 0.56 8.14 -2.39 -0.02 0.54 16 29 H 0.06 0.55 8.14 -2.38 -0.02 0.53 16 30 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 31 H 0.07 0.71 8.14 -2.39 -0.02 0.70 16 32 H 0.08 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.08 1.05 8.14 -2.38 -0.02 1.04 16 34 H 0.07 1.31 8.13 -2.39 -0.02 1.29 16 35 H 0.07 1.30 8.13 -2.39 -0.02 1.29 16 36 H 0.12 2.99 8.14 -2.39 -0.02 2.97 16 37 H 0.14 3.08 7.75 -2.39 -0.02 3.06 16 38 H 0.43 11.77 7.71 -96.75 -0.75 11.02 16 39 H 0.13 4.78 7.59 -2.91 -0.02 4.76 16 40 H 0.11 5.63 6.16 -2.91 -0.02 5.61 16 41 H 0.30 12.21 8.30 -92.71 -0.77 11.44 16 42 H 0.11 4.70 8.06 -2.91 -0.02 4.67 16 43 H 0.12 4.76 7.60 -2.91 -0.02 4.73 16 Total: -1.00 -62.75 380.64 0.69 -62.07 By element: Atomic # 1 Polarization: 36.19 SS G_CDS: 0.28 Total: 36.47 kcal Atomic # 6 Polarization: -59.14 SS G_CDS: 4.12 Total: -55.01 kcal Atomic # 7 Polarization: -68.69 SS G_CDS: -0.89 Total: -69.58 kcal Atomic # 8 Polarization: -102.53 SS G_CDS: -4.53 Total: -107.06 kcal Atomic # 14 Polarization: 33.56 SS G_CDS: 2.03 Total: 35.59 kcal Atomic # 16 Polarization: 97.85 SS G_CDS: -0.32 Total: 97.53 kcal Total: -62.75 0.69 -62.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001339856495.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -122.303 kcal (2) G-P(sol) polarization free energy of solvation -62.754 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -185.056 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.687 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.067 kcal (6) G-S(sol) free energy of system = (1) + (5) -184.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds