Wall clock time and date at job start Sat Apr 11 2020 06:15:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52999 * 109.99610 * 2 1 4 4 O 1.42903 * 109.46939 * 301.09116 * 3 2 1 5 5 C 1.54335 * 109.99175 * 238.95944 * 2 1 3 6 6 C 1.55161 * 103.02082 * 218.66215 * 5 2 1 7 7 H 1.08992 * 111.00541 * 277.23749 * 6 5 2 8 8 O 1.42895 * 111.03647 * 153.39416 * 6 5 2 9 9 C 1.54911 * 101.57857 * 35.30905 * 6 5 2 10 10 N 1.47022 * 109.88247 * 121.09160 * 2 1 3 11 11 S 1.65601 * 125.65214 * 298.39407 * 10 2 1 12 12 O 1.42098 * 106.40702 * 162.75248 * 11 10 2 13 13 O 1.42108 * 106.39790 * 29.83507 * 11 10 2 14 14 C 1.76198 * 107.21995 * 276.29752 * 11 10 2 15 15 C 1.37646 * 120.12534 * 114.37907 * 14 11 10 16 16 C 1.38617 * 120.24582 * 180.02562 * 15 14 11 17 17 C 1.38661 * 120.49975 * 0.02562 * 16 15 14 18 18 C 1.37596 * 120.24884 * 359.97438 * 17 16 15 19 19 C 1.40698 * 120.12894 * 294.38055 * 14 11 10 20 20 C 1.41394 * 120.24225 * 0.02562 * 19 14 11 21 21 H 1.08002 * 119.99575 * 329.34144 * 20 19 14 22 22 C 1.39946 * 120.00249 * 149.34681 * 20 19 14 23 23 N 1.30818 * 119.99728 * 349.96375 * 22 20 19 24 24 Si 1.86795 * 120.00237 * 169.96284 * 22 20 19 25 25 H 1.48505 * 109.47235 * 89.99932 * 24 22 20 26 26 H 1.48495 * 109.47390 * 210.00342 * 24 22 20 27 27 H 1.48507 * 109.46930 * 330.00145 * 24 22 20 28 28 H 1.09000 * 109.47444 * 298.90458 * 1 2 3 29 29 H 1.08997 * 109.47201 * 58.90827 * 1 2 3 30 30 H 1.09004 * 109.47215 * 178.90949 * 1 2 3 31 31 H 1.08994 * 109.47802 * 61.09252 * 3 2 1 32 32 H 1.09003 * 109.46910 * 181.10014 * 3 2 1 33 33 H 0.96700 * 113.99863 * 179.97438 * 4 3 2 34 34 H 1.09001 * 110.84884 * 100.19743 * 5 2 1 35 35 H 1.08996 * 110.66586 * 337.04740 * 5 2 1 36 36 H 0.96700 * 114.00180 * 186.33492 * 8 6 5 37 37 H 1.09000 * 110.36308 * 204.15039 * 9 6 5 38 38 H 1.08999 * 110.46243 * 81.87739 * 9 6 5 39 39 H 1.07998 * 119.87645 * 359.97438 * 15 14 11 40 40 H 1.07992 * 119.75117 * 180.02562 * 16 15 14 41 41 H 1.08002 * 119.87536 * 180.02562 * 17 16 15 42 42 H 1.07997 * 120.12489 * 179.72506 * 18 17 16 43 43 H 0.97000 * 120.00162 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0531 1.4378 0.0000 4 8 1.5622 2.1233 -1.1538 5 6 2.0576 -0.7479 -1.2427 6 6 3.2864 -1.5183 -0.6914 7 1 4.1669 -0.8768 -0.6578 8 8 3.5420 -2.6946 -1.4614 9 6 2.8099 -1.8824 0.7369 10 7 2.0300 -0.7140 1.1840 11 16 1.7565 -0.2814 2.7589 12 8 2.0549 -1.4255 3.5470 13 8 0.4941 0.3708 2.7824 14 6 2.9551 0.9394 3.1802 15 6 2.5593 2.2263 3.4666 16 6 3.5001 3.1888 3.7978 17 6 4.8484 2.8684 3.8441 18 6 5.2668 1.5884 3.5615 19 6 4.3204 0.6027 3.2251 20 6 4.7388 -0.7158 2.9322 21 1 4.0897 -1.5500 3.1540 22 6 5.9938 -0.9398 2.3551 23 7 6.6968 0.0682 1.9067 24 14 6.6652 -2.6781 2.2251 25 1 6.2407 -3.2775 0.9344 26 1 8.1483 -2.6421 2.2901 27 1 6.1403 -3.4967 3.3474 28 1 -0.3634 0.4967 0.8996 29 1 -0.3633 0.5307 -0.8800 30 1 -0.3634 -1.0275 -0.0196 31 1 1.7106 1.9491 0.8995 32 1 3.1429 1.4278 -0.0197 33 1 1.8545 3.0427 -1.2190 34 1 2.3597 -0.0451 -2.0192 35 1 1.3066 -1.4406 -1.6224 36 1 4.2385 -3.2587 -1.0984 37 1 3.6656 -2.0411 1.3933 38 1 2.1807 -2.7721 0.7135 39 1 1.5118 2.4871 3.4324 40 1 3.1807 4.1959 4.0215 41 1 5.5728 3.6262 4.1038 42 1 6.3178 1.3422 3.5939 43 1 7.5669 -0.0870 1.5070 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464116740.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:08 Heat of formation + Delta-G solvation = -148.119311 kcal Electronic energy + Delta-G solvation = -30671.835086 eV Core-core repulsion = 26615.817912 eV Total energy + Delta-G solvation = -4056.017174 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -39.37489 -37.71936 -36.76712 -36.25515 -35.26849 -34.98535 -34.02512 -30.97783 -30.34138 -29.69167 -29.54022 -26.28948 -25.65543 -24.65416 -21.84775 -21.36056 -21.26591 -20.20107 -18.00066 -17.77525 -17.18910 -17.11920 -16.66995 -16.06594 -15.64852 -15.25744 -14.62635 -14.43200 -14.34305 -14.10695 -13.52832 -13.49769 -13.45455 -13.12772 -12.86613 -12.80840 -12.37006 -12.08578 -11.97513 -11.77146 -11.64923 -11.45899 -11.35343 -11.31937 -11.25065 -11.15197 -10.92456 -10.72238 -10.65669 -10.35185 -10.15236 -9.99041 -9.82742 -9.58773 -9.57516 -9.31971 -8.52276 -8.11852 -7.70152 -7.16765 -4.91350 1.33032 2.21342 2.58331 2.85027 2.90724 2.96533 3.58926 3.63416 4.25820 4.37764 4.51986 4.62366 4.74235 4.93221 5.21184 5.29011 5.35419 5.47644 5.51309 5.64213 5.86305 5.91835 5.94575 6.01258 6.12290 6.14717 6.19489 6.24290 6.28153 6.33627 6.45276 6.59030 6.65813 6.80046 6.82689 6.90482 7.07499 7.21746 7.39442 7.57712 7.68875 7.78653 7.81218 7.81942 8.22267 8.38529 8.52902 9.76230 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009426 B = 0.008174 C = 0.005875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2969.793974 B = 3424.624897 C = 4764.569091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.190 3.810 3 C 0.064 3.936 4 O -0.568 6.568 5 C -0.104 4.104 6 C 0.091 3.909 7 H 0.078 0.922 8 O -0.562 6.562 9 C 0.087 3.913 10 N -0.988 5.988 11 S 2.715 3.285 12 O -0.969 6.969 13 O -0.986 6.986 14 C -0.776 4.776 15 C -0.005 4.005 16 C -0.244 4.244 17 C -0.077 4.077 18 C -0.155 4.155 19 C 0.195 3.805 20 C -0.479 4.479 21 H 0.114 0.886 22 C 0.080 3.920 23 N -0.778 5.778 24 Si 0.901 3.099 25 H -0.261 1.261 26 H -0.271 1.271 27 H -0.251 1.251 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.061 0.939 33 H 0.379 0.621 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.379 0.621 37 H 0.100 0.900 38 H 0.066 0.934 39 H 0.108 0.892 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.124 0.876 43 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.855 -0.300 -5.730 6.030 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.102 3.898 3 C -0.016 4.016 4 O -0.373 6.373 5 C -0.143 4.143 6 C 0.030 3.970 7 H 0.096 0.904 8 O -0.367 6.367 9 C -0.039 4.039 10 N -0.824 5.824 11 S 2.815 3.185 12 O -0.960 6.960 13 O -0.977 6.977 14 C -0.871 4.871 15 C -0.025 4.025 16 C -0.265 4.265 17 C -0.096 4.096 18 C -0.174 4.174 19 C 0.190 3.810 20 C -0.507 4.507 21 H 0.132 0.868 22 C -0.141 4.141 23 N -0.401 5.401 24 Si 0.724 3.276 25 H -0.186 1.186 26 H -0.196 1.196 27 H -0.174 1.174 28 H 0.107 0.893 29 H 0.089 0.911 30 H 0.074 0.926 31 H 0.072 0.928 32 H 0.079 0.921 33 H 0.225 0.775 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.226 0.774 37 H 0.118 0.882 38 H 0.084 0.916 39 H 0.126 0.874 40 H 0.114 0.886 41 H 0.112 0.888 42 H 0.142 0.858 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -3.086 -0.941 -5.729 6.575 hybrid contribution 1.971 0.320 0.402 2.037 sum -1.115 -0.621 -5.326 5.477 Atomic orbital electron populations 1.22441 0.93495 1.02398 1.04560 1.20387 0.94389 0.90188 0.84884 1.22633 0.98403 0.92367 0.88157 1.86346 1.76559 1.28907 1.45481 1.22614 0.96642 0.98473 0.96522 1.23058 0.97852 0.86570 0.89480 0.90374 1.86429 1.60930 1.36306 1.53043 1.22879 0.96409 0.87835 0.96749 1.58504 1.66486 1.36198 1.21253 1.00737 0.73224 0.73795 0.70763 1.93477 1.85689 1.50488 1.66323 1.93419 1.40961 1.77327 1.85978 1.29926 1.11911 1.12110 1.33145 1.20240 0.97811 0.91464 0.93005 1.20516 0.93489 0.98119 1.14344 1.20929 0.94937 0.96254 0.97435 1.21530 1.00144 0.92806 1.02957 1.16995 0.88459 0.92881 0.82637 1.20459 1.01644 0.94262 1.34318 0.86809 1.25984 0.95745 0.99635 0.92740 1.69770 1.11535 1.32963 1.25844 0.86386 0.78888 0.81714 0.80636 1.18581 1.19614 1.17425 0.89272 0.91071 0.92582 0.92782 0.92111 0.77465 0.89410 0.89995 0.77411 0.88168 0.91566 0.87428 0.88647 0.88768 0.85794 0.90150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.77 8.22 37.15 0.31 -2.46 16 2 C 0.19 3.21 0.75 -130.84 -0.10 3.11 16 3 C 0.06 1.06 5.70 37.16 0.21 1.28 16 4 O -0.57 -8.08 12.25 -35.23 -0.43 -8.51 16 5 C -0.10 -1.60 5.65 -24.89 -0.14 -1.74 16 6 C 0.09 1.44 4.43 -24.58 -0.11 1.33 16 7 H 0.08 1.32 8.14 -51.93 -0.42 0.89 16 8 O -0.56 -8.14 13.47 -35.23 -0.47 -8.61 16 9 C 0.09 1.52 6.40 -2.53 -0.02 1.50 16 10 N -0.99 -18.62 3.06 -97.70 -0.30 -18.92 16 11 S 2.71 59.00 4.74 -107.50 -0.51 58.49 16 12 O -0.97 -23.27 15.15 -57.17 -0.87 -24.13 16 13 O -0.99 -21.72 14.10 -57.17 -0.81 -22.53 16 14 C -0.78 -17.68 5.33 -38.87 -0.21 -17.88 16 15 C -0.01 -0.11 8.81 -39.66 -0.35 -0.46 16 16 C -0.24 -5.04 10.05 -39.29 -0.39 -5.43 16 17 C -0.08 -1.62 10.02 -39.66 -0.40 -2.02 16 18 C -0.15 -3.61 8.65 -38.88 -0.34 -3.95 16 19 C 0.19 4.67 5.53 -106.83 -0.59 4.08 16 20 C -0.48 -11.16 6.28 -37.74 -0.24 -11.39 16 21 H 0.11 2.71 4.41 -52.49 -0.23 2.48 16 22 C 0.08 1.72 5.17 -17.34 -0.09 1.63 16 23 N -0.78 -17.03 10.92 55.55 0.61 -16.42 16 24 Si 0.90 16.19 29.06 -169.99 -4.94 11.25 16 25 H -0.26 -4.23 7.11 56.52 0.40 -3.83 16 26 H -0.27 -4.82 7.11 56.52 0.40 -4.42 16 27 H -0.25 -4.69 7.11 56.52 0.40 -4.29 16 28 H 0.09 1.60 5.71 -51.93 -0.30 1.30 16 29 H 0.07 1.05 7.66 -51.93 -0.40 0.65 16 30 H 0.06 0.85 8.13 -51.93 -0.42 0.42 16 31 H 0.05 0.96 6.73 -51.93 -0.35 0.61 16 32 H 0.06 1.08 8.14 -51.93 -0.42 0.66 16 33 H 0.38 3.82 9.12 45.56 0.42 4.23 16 34 H 0.09 1.31 7.33 -51.93 -0.38 0.93 16 35 H 0.08 1.20 7.84 -51.93 -0.41 0.79 16 36 H 0.38 4.23 9.11 45.56 0.42 4.64 16 37 H 0.10 1.87 4.37 -51.93 -0.23 1.64 16 38 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 39 H 0.11 2.15 7.32 -52.49 -0.38 1.77 16 40 H 0.10 1.71 8.06 -52.49 -0.42 1.29 16 41 H 0.09 1.74 8.06 -52.49 -0.42 1.32 16 42 H 0.12 2.93 6.33 -52.49 -0.33 2.60 16 43 H 0.29 5.72 8.30 -40.82 -0.34 5.38 16 LS Contribution 347.97 15.07 5.24 5.24 Total: -1.00 -28.05 347.97 -8.77 -36.82 By element: Atomic # 1 Polarization: 23.58 SS G_CDS: -3.85 Total: 19.73 kcal Atomic # 6 Polarization: -29.96 SS G_CDS: -2.45 Total: -32.41 kcal Atomic # 7 Polarization: -35.65 SS G_CDS: 0.31 Total: -35.34 kcal Atomic # 8 Polarization: -61.21 SS G_CDS: -2.58 Total: -63.79 kcal Atomic # 14 Polarization: 16.19 SS G_CDS: -4.94 Total: 11.25 kcal Atomic # 16 Polarization: 59.00 SS G_CDS: -0.51 Total: 58.49 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -28.05 -8.77 -36.82 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464116740.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -111.302 kcal (2) G-P(sol) polarization free energy of solvation -28.045 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.347 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.772 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.817 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.119 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds