Wall clock time and date at job start Sat Apr 11 2020 06:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53004 * 109.99331 * 2 1 4 4 O 1.42902 * 109.46761 * 60.29562 * 3 2 1 5 5 C 1.54316 * 109.88489 * 121.09717 * 2 1 3 6 6 C 1.55154 * 102.94078 * 97.22845 * 5 2 1 7 7 H 1.09002 * 111.00237 * 277.38479 * 6 5 2 8 8 O 1.42904 * 111.00065 * 153.57721 * 6 5 2 9 9 C 1.54906 * 101.58132 * 35.50316 * 6 5 2 10 10 N 1.47024 * 109.88301 * 238.90959 * 2 1 3 11 11 S 1.65594 * 125.64815 * 59.47503 * 10 2 1 12 12 O 1.42108 * 106.39905 * 206.24322 * 11 10 2 13 13 O 1.42098 * 106.40843 * 339.16233 * 11 10 2 14 14 C 1.76199 * 107.22060 * 92.70648 * 11 10 2 15 15 C 1.37646 * 120.12882 * 245.98363 * 14 11 10 16 16 C 1.38604 * 120.24829 * 179.70126 * 15 14 11 17 17 C 1.38657 * 120.50234 * 0.58903 * 16 15 14 18 18 C 1.37594 * 120.24738 * 359.68942 * 17 16 15 19 19 C 1.40698 * 120.13025 * 66.25057 * 14 11 10 20 20 C 1.41392 * 120.24281 * 0.03020 * 19 14 11 21 21 H 1.07994 * 120.00187 * 28.66178 * 20 19 14 22 22 C 1.39949 * 120.00011 * 208.66676 * 20 19 14 23 23 N 1.30824 * 119.99963 * 11.64675 * 22 20 19 24 24 Si 1.86796 * 120.00097 * 191.64675 * 22 20 19 25 25 H 1.48506 * 109.47048 * 95.01708 * 24 22 20 26 26 H 1.48496 * 109.47319 * 215.01448 * 24 22 20 27 27 H 1.48501 * 109.47059 * 335.01555 * 24 22 20 28 28 H 1.08994 * 109.47165 * 300.35073 * 1 2 3 29 29 H 1.09000 * 109.47161 * 60.36078 * 1 2 3 30 30 H 1.08998 * 109.46517 * 180.35310 * 1 2 3 31 31 H 1.08994 * 109.47319 * 180.28979 * 3 2 1 32 32 H 1.08993 * 109.47623 * 300.29662 * 3 2 1 33 33 H 0.96708 * 113.99763 * 184.97873 * 4 3 2 34 34 H 1.09004 * 110.71965 * 338.86581 * 5 2 1 35 35 H 1.09003 * 110.71919 * 215.59145 * 5 2 1 36 36 H 0.96704 * 113.99778 * 179.97438 * 8 6 5 37 37 H 1.08998 * 110.36604 * 81.83468 * 9 6 5 38 38 H 1.09000 * 110.36177 * 204.15042 * 9 6 5 39 39 H 1.08004 * 119.86934 * 359.97438 * 15 14 11 40 40 H 1.08004 * 119.74925 * 180.30106 * 16 15 14 41 41 H 1.08000 * 119.87689 * 179.70215 * 17 16 15 42 42 H 1.07999 * 120.12650 * 180.02562 * 18 17 16 43 43 H 0.96996 * 120.00134 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0532 1.4378 0.0000 4 8 1.5887 2.1137 1.1703 5 6 2.0550 -0.7495 1.2426 6 6 2.3521 -2.1694 0.6922 7 1 1.4455 -2.7738 0.6609 8 8 3.3684 -2.8148 1.4621 9 6 2.8570 -1.8495 -0.7369 10 7 2.0301 -0.7140 -1.1840 11 16 1.7156 -0.3100 -2.7588 12 8 1.8294 -1.5102 -3.5112 13 8 0.5399 0.4878 -2.7414 14 6 3.0224 0.7414 -3.2986 15 6 2.7662 2.0570 -3.6117 16 6 3.7934 2.8879 -4.0306 17 6 5.0866 2.4024 -4.1511 18 6 5.3649 1.0892 -3.8489 19 6 4.3309 0.2379 -3.4167 20 6 4.6050 -1.1134 -3.1039 21 1 3.8362 -1.8622 -3.2244 22 6 5.8725 -1.4807 -2.6380 23 7 6.7282 -0.5600 -2.2753 24 14 6.3426 -3.2856 -2.5341 25 1 7.0720 -3.6788 -3.7665 26 1 7.2149 -3.5027 -1.3522 27 1 5.1147 -4.1100 -2.4012 28 1 -0.3633 0.5192 0.8868 29 1 -0.3633 0.5082 -0.8932 30 1 -0.3632 -1.0277 0.0063 31 1 3.1431 1.4279 -0.0052 32 1 1.6903 1.9566 -0.8872 33 1 1.8185 3.0526 1.1996 34 1 1.2919 -0.7891 2.0200 35 1 2.9658 -0.2831 1.6181 36 1 3.5878 -3.7054 1.1558 37 1 3.9093 -1.5665 -0.7129 38 1 2.7090 -2.7078 -1.3924 39 1 1.7616 2.4444 -3.5263 40 1 3.5841 3.9202 -4.2696 41 1 5.8785 3.0575 -4.4830 42 1 6.3729 0.7132 -3.9430 43 1 7.6068 -0.8145 -1.9527 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464116744.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:12 Heat of formation + Delta-G solvation = -148.817274 kcal Electronic energy + Delta-G solvation = -30473.323372 eV Core-core repulsion = 26417.275932 eV Total energy + Delta-G solvation = -4056.047440 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -39.37756 -37.67065 -36.79817 -36.26836 -35.30329 -34.98026 -33.98339 -30.99249 -30.28136 -29.63802 -29.54094 -26.34912 -25.62144 -24.63539 -21.77607 -21.43231 -21.21489 -20.17984 -17.98605 -17.77982 -17.26706 -17.13317 -16.67846 -16.04565 -15.50231 -15.13571 -14.76696 -14.47271 -14.33080 -14.09628 -13.51270 -13.48642 -13.36571 -13.11649 -12.85027 -12.82265 -12.37991 -12.09288 -11.99199 -11.85520 -11.61641 -11.34945 -11.32879 -11.26803 -11.23066 -11.19481 -10.92506 -10.65002 -10.57257 -10.51297 -10.10965 -9.96749 -9.78387 -9.71410 -9.52290 -9.29201 -8.48406 -8.08260 -7.67774 -7.12486 -4.85831 1.34579 2.26303 2.64861 2.91322 2.96010 3.03077 3.59934 3.69254 4.30188 4.30853 4.52728 4.64607 4.71073 4.97512 5.16871 5.23724 5.37270 5.40178 5.44924 5.59575 5.81277 5.90292 5.97001 5.99693 6.10907 6.13508 6.16279 6.24392 6.32526 6.38921 6.51129 6.55476 6.69421 6.80014 6.86004 6.94784 7.09742 7.26488 7.43865 7.62300 7.73894 7.75727 7.79892 7.86958 8.28304 8.43458 8.58231 9.80073 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009558 B = 0.007796 C = 0.005578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2928.890756 B = 3590.786923 C = 5018.191455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.190 3.810 3 C 0.064 3.936 4 O -0.568 6.568 5 C -0.099 4.099 6 C 0.086 3.914 7 H 0.069 0.931 8 O -0.557 6.557 9 C 0.093 3.907 10 N -0.990 5.990 11 S 2.715 3.285 12 O -0.970 6.970 13 O -0.987 6.987 14 C -0.779 4.779 15 C -0.004 4.004 16 C -0.247 4.247 17 C -0.077 4.077 18 C -0.156 4.156 19 C 0.191 3.809 20 C -0.473 4.473 21 H 0.114 0.886 22 C 0.080 3.920 23 N -0.774 5.774 24 Si 0.906 3.094 25 H -0.264 1.264 26 H -0.271 1.271 27 H -0.251 1.251 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.054 0.946 31 H 0.060 0.940 32 H 0.054 0.946 33 H 0.378 0.622 34 H 0.082 0.918 35 H 0.085 0.915 36 H 0.378 0.622 37 H 0.093 0.907 38 H 0.080 0.920 39 H 0.107 0.893 40 H 0.095 0.905 41 H 0.094 0.906 42 H 0.125 0.875 43 H 0.288 0.712 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.639 -1.023 6.212 7.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.102 3.898 3 C -0.015 4.015 4 O -0.372 6.372 5 C -0.137 4.137 6 C 0.026 3.974 7 H 0.087 0.913 8 O -0.362 6.362 9 C -0.033 4.033 10 N -0.827 5.827 11 S 2.816 3.184 12 O -0.961 6.961 13 O -0.978 6.978 14 C -0.874 4.874 15 C -0.024 4.024 16 C -0.268 4.268 17 C -0.096 4.096 18 C -0.176 4.176 19 C 0.186 3.814 20 C -0.501 4.501 21 H 0.131 0.869 22 C -0.141 4.141 23 N -0.397 5.397 24 Si 0.729 3.271 25 H -0.189 1.189 26 H -0.196 1.196 27 H -0.174 1.174 28 H 0.090 0.910 29 H 0.109 0.891 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.073 0.927 33 H 0.225 0.775 34 H 0.101 0.899 35 H 0.103 0.897 36 H 0.225 0.775 37 H 0.111 0.889 38 H 0.099 0.901 39 H 0.125 0.875 40 H 0.113 0.887 41 H 0.112 0.888 42 H 0.143 0.857 43 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -4.424 -1.327 6.242 7.765 hybrid contribution 1.498 -0.083 -0.519 1.587 sum -2.926 -1.410 5.722 6.580 Atomic orbital electron populations 1.22495 0.93655 1.02343 1.04754 1.20351 0.94165 0.90347 0.84939 1.22645 0.98539 0.92518 0.87793 1.86356 1.81396 1.26608 1.42878 1.22542 1.02206 0.92868 0.96129 1.23078 0.89924 0.93999 0.90404 0.91289 1.86500 1.58879 1.33779 1.57031 1.22841 0.96842 0.88798 0.94797 1.58516 1.64327 1.38741 1.21099 1.00683 0.73378 0.73542 0.70810 1.93472 1.87515 1.46948 1.68116 1.93407 1.46840 1.71392 1.86151 1.29840 1.15293 1.09482 1.32821 1.20213 0.97454 0.91651 0.93079 1.20491 0.93714 0.98483 1.14091 1.20912 0.95387 0.95748 0.97565 1.21545 1.00160 0.93298 1.02585 1.17015 0.88677 0.92488 0.83184 1.20523 0.98692 0.94417 1.36474 0.86860 1.26007 0.95395 1.00480 0.92233 1.69783 1.06732 1.35634 1.27594 0.86293 0.80118 0.81559 0.79155 1.18882 1.19573 1.17445 0.90979 0.89132 0.92669 0.92218 0.92731 0.77506 0.89935 0.89651 0.77516 0.88930 0.90143 0.87526 0.88721 0.88822 0.85744 0.90120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.72 8.20 37.16 0.30 -2.42 16 2 C 0.19 3.17 0.70 -130.84 -0.09 3.08 16 3 C 0.06 1.07 5.88 37.16 0.22 1.29 16 4 O -0.57 -8.01 12.71 -35.23 -0.45 -8.46 16 5 C -0.10 -1.49 5.45 -24.90 -0.14 -1.63 16 6 C 0.09 1.26 4.43 -24.59 -0.11 1.15 16 7 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 8 O -0.56 -7.75 13.47 -35.23 -0.47 -8.22 16 9 C 0.09 1.63 5.16 -2.54 -0.01 1.62 16 10 N -0.99 -18.60 3.11 -97.71 -0.30 -18.90 16 11 S 2.72 59.08 4.87 -107.50 -0.52 58.56 16 12 O -0.97 -23.28 14.95 -57.17 -0.85 -24.14 16 13 O -0.99 -21.55 13.62 -57.17 -0.78 -22.33 16 14 C -0.78 -18.16 5.97 -38.87 -0.23 -18.39 16 15 C 0.00 -0.09 9.54 -39.66 -0.38 -0.47 16 16 C -0.25 -5.25 10.05 -39.29 -0.39 -5.64 16 17 C -0.08 -1.69 10.02 -39.66 -0.40 -2.08 16 18 C -0.16 -3.76 8.66 -38.88 -0.34 -4.09 16 19 C 0.19 4.71 5.55 -106.83 -0.59 4.12 16 20 C -0.47 -11.33 6.08 -37.74 -0.23 -11.56 16 21 H 0.11 2.75 4.67 -52.49 -0.24 2.51 16 22 C 0.08 1.80 4.89 -17.34 -0.08 1.71 16 23 N -0.77 -17.66 10.89 55.55 0.60 -17.06 16 24 Si 0.91 16.92 29.57 -169.99 -5.03 11.89 16 25 H -0.26 -4.97 7.11 56.52 0.40 -4.57 16 26 H -0.27 -4.87 7.11 56.52 0.40 -4.47 16 27 H -0.25 -4.55 7.11 56.52 0.40 -4.15 16 28 H 0.07 1.02 7.72 -51.93 -0.40 0.62 16 29 H 0.09 1.58 5.66 -51.93 -0.29 1.29 16 30 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.05 0.96 7.60 -51.93 -0.39 0.56 16 33 H 0.38 3.73 9.12 45.56 0.42 4.15 16 34 H 0.08 1.11 7.83 -51.93 -0.41 0.71 16 35 H 0.08 1.37 7.85 -51.93 -0.41 0.96 16 36 H 0.38 3.68 9.12 45.56 0.42 4.10 16 37 H 0.09 1.79 6.72 -51.93 -0.35 1.44 16 38 H 0.08 1.39 7.61 -51.93 -0.40 0.99 16 39 H 0.11 2.17 7.32 -52.48 -0.38 1.78 16 40 H 0.09 1.74 8.06 -52.48 -0.42 1.32 16 41 H 0.09 1.79 8.06 -52.49 -0.42 1.36 16 42 H 0.12 3.03 6.25 -52.49 -0.33 2.70 16 43 H 0.29 5.96 8.30 -40.82 -0.34 5.62 16 LS Contribution 351.37 15.07 5.30 5.30 Total: -1.00 -29.28 351.37 -9.00 -38.29 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: -4.02 Total: 18.38 kcal Atomic # 6 Polarization: -30.84 SS G_CDS: -2.47 Total: -33.31 kcal Atomic # 7 Polarization: -36.26 SS G_CDS: 0.30 Total: -35.96 kcal Atomic # 8 Polarization: -60.58 SS G_CDS: -2.56 Total: -63.14 kcal Atomic # 14 Polarization: 16.92 SS G_CDS: -5.03 Total: 11.89 kcal Atomic # 16 Polarization: 59.08 SS G_CDS: -0.52 Total: 58.56 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -29.28 -9.00 -38.29 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464116744.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -110.532 kcal (2) G-P(sol) polarization free energy of solvation -29.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.004 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.285 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.817 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds