Wall clock time and date at job start Sat Apr 11 2020 06:15:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53004 * 109.99331 * 2 1 4 4 O 1.42902 * 109.46761 * 60.29562 * 3 2 1 5 5 C 1.54316 * 109.88489 * 121.09717 * 2 1 3 6 6 C 1.55154 * 102.94078 * 97.22845 * 5 2 1 7 7 H 1.09002 * 111.00237 * 277.38479 * 6 5 2 8 8 O 1.42904 * 111.00065 * 153.57721 * 6 5 2 9 9 C 1.54906 * 101.58132 * 35.50316 * 6 5 2 10 10 N 1.47024 * 109.88301 * 238.90959 * 2 1 3 11 11 S 1.65594 * 125.64815 * 59.47503 * 10 2 1 12 12 O 1.42108 * 106.39905 * 206.24322 * 11 10 2 13 13 O 1.42098 * 106.40843 * 339.16233 * 11 10 2 14 14 C 1.76199 * 107.22060 * 92.70648 * 11 10 2 15 15 C 1.37646 * 120.12882 * 245.98363 * 14 11 10 16 16 C 1.38604 * 120.24829 * 179.70126 * 15 14 11 17 17 C 1.38657 * 120.50234 * 0.58903 * 16 15 14 18 18 C 1.37594 * 120.24738 * 359.68942 * 17 16 15 19 19 C 1.40698 * 120.13025 * 66.25057 * 14 11 10 20 20 C 1.41392 * 120.24281 * 0.03020 * 19 14 11 21 21 H 1.07994 * 120.00187 * 28.66178 * 20 19 14 22 22 C 1.39949 * 120.00011 * 208.66676 * 20 19 14 23 23 N 1.30824 * 119.99963 * 11.64675 * 22 20 19 24 24 Si 1.86796 * 120.00097 * 191.64675 * 22 20 19 25 25 H 1.48506 * 109.47048 * 95.01708 * 24 22 20 26 26 H 1.48496 * 109.47319 * 215.01448 * 24 22 20 27 27 H 1.48501 * 109.47059 * 335.01555 * 24 22 20 28 28 H 1.08994 * 109.47165 * 300.35073 * 1 2 3 29 29 H 1.09000 * 109.47161 * 60.36078 * 1 2 3 30 30 H 1.08998 * 109.46517 * 180.35310 * 1 2 3 31 31 H 1.08994 * 109.47319 * 180.28979 * 3 2 1 32 32 H 1.08993 * 109.47623 * 300.29662 * 3 2 1 33 33 H 0.96708 * 113.99763 * 184.97873 * 4 3 2 34 34 H 1.09004 * 110.71965 * 338.86581 * 5 2 1 35 35 H 1.09003 * 110.71919 * 215.59145 * 5 2 1 36 36 H 0.96704 * 113.99778 * 179.97438 * 8 6 5 37 37 H 1.08998 * 110.36604 * 81.83468 * 9 6 5 38 38 H 1.09000 * 110.36177 * 204.15042 * 9 6 5 39 39 H 1.08004 * 119.86934 * 359.97438 * 15 14 11 40 40 H 1.08004 * 119.74925 * 180.30106 * 16 15 14 41 41 H 1.08000 * 119.87689 * 179.70215 * 17 16 15 42 42 H 1.07999 * 120.12650 * 180.02562 * 18 17 16 43 43 H 0.96996 * 120.00134 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0532 1.4378 0.0000 4 8 1.5887 2.1137 1.1703 5 6 2.0550 -0.7495 1.2426 6 6 2.3521 -2.1694 0.6922 7 1 1.4455 -2.7738 0.6609 8 8 3.3684 -2.8148 1.4621 9 6 2.8570 -1.8495 -0.7369 10 7 2.0301 -0.7140 -1.1840 11 16 1.7156 -0.3100 -2.7588 12 8 1.8294 -1.5102 -3.5112 13 8 0.5399 0.4878 -2.7414 14 6 3.0224 0.7414 -3.2986 15 6 2.7662 2.0570 -3.6117 16 6 3.7934 2.8879 -4.0306 17 6 5.0866 2.4024 -4.1511 18 6 5.3649 1.0892 -3.8489 19 6 4.3309 0.2379 -3.4167 20 6 4.6050 -1.1134 -3.1039 21 1 3.8362 -1.8622 -3.2244 22 6 5.8725 -1.4807 -2.6380 23 7 6.7282 -0.5600 -2.2753 24 14 6.3426 -3.2856 -2.5341 25 1 7.0720 -3.6788 -3.7665 26 1 7.2149 -3.5027 -1.3522 27 1 5.1147 -4.1100 -2.4012 28 1 -0.3633 0.5192 0.8868 29 1 -0.3633 0.5082 -0.8932 30 1 -0.3632 -1.0277 0.0063 31 1 3.1431 1.4279 -0.0052 32 1 1.6903 1.9566 -0.8872 33 1 1.8185 3.0526 1.1996 34 1 1.2919 -0.7891 2.0200 35 1 2.9658 -0.2831 1.6181 36 1 3.5878 -3.7054 1.1558 37 1 3.9093 -1.5665 -0.7129 38 1 2.7090 -2.7078 -1.3924 39 1 1.7616 2.4444 -3.5263 40 1 3.5841 3.9202 -4.2696 41 1 5.8785 3.0575 -4.4830 42 1 6.3729 0.7132 -3.9430 43 1 7.6068 -0.8145 -1.9527 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464116744.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:11 Heat of formation + Delta-G solvation = -172.316321 kcal Electronic energy + Delta-G solvation = -30474.342367 eV Core-core repulsion = 26417.275932 eV Total energy + Delta-G solvation = -4057.066435 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.66247 -39.40606 -38.31333 -37.65369 -36.76548 -36.48435 -35.69563 -32.37826 -31.96771 -31.38072 -30.81127 -27.65898 -27.31199 -25.97473 -23.49866 -22.96052 -22.70187 -21.56096 -19.63608 -19.46241 -18.53369 -18.38797 -18.09148 -17.69953 -17.16512 -16.64834 -16.12762 -16.07657 -15.71686 -15.43636 -15.20351 -14.93514 -14.81125 -14.50655 -14.43807 -14.27073 -13.72575 -13.66775 -13.42715 -13.26438 -13.12360 -13.03184 -12.95761 -12.85190 -12.80654 -12.66167 -12.36135 -12.15757 -12.14128 -11.82505 -11.66436 -11.38659 -11.21181 -11.06610 -10.96345 -10.90888 -10.00204 -9.78728 -9.45305 -8.81045 -6.64025 -0.31464 0.50929 0.95184 1.36689 1.47492 1.50380 2.08105 2.14340 2.59679 2.92201 3.18180 3.26098 3.34009 3.52697 3.74510 3.86434 3.95432 4.16446 4.23290 4.26959 4.34260 4.47092 4.48969 4.59503 4.68300 4.71102 4.84542 4.96002 4.96084 5.01960 5.08394 5.14548 5.20227 5.21250 5.26797 5.50898 5.51357 5.61216 5.70855 5.84657 5.98396 6.11113 6.49869 6.68064 6.80701 6.81585 6.87534 8.14063 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.009558 B = 0.007796 C = 0.005578 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2928.890756 B = 3590.786923 C = 5018.191455 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.181 3.819 3 C 0.072 3.928 4 O -0.565 6.565 5 C -0.094 4.094 6 C 0.100 3.900 7 H 0.097 0.903 8 O -0.566 6.566 9 C 0.087 3.913 10 N -0.989 5.989 11 S 2.729 3.271 12 O -0.997 6.997 13 O -0.991 6.991 14 C -0.797 4.797 15 C -0.014 4.014 16 C -0.249 4.249 17 C -0.076 4.076 18 C -0.185 4.185 19 C 0.165 3.835 20 C -0.491 4.491 21 H 0.105 0.895 22 C 0.052 3.948 23 N -0.797 5.797 24 Si 0.957 3.043 25 H -0.265 1.265 26 H -0.256 1.256 27 H -0.244 1.244 28 H 0.090 0.910 29 H 0.069 0.931 30 H 0.070 0.930 31 H 0.039 0.961 32 H 0.041 0.959 33 H 0.397 0.603 34 H 0.106 0.894 35 H 0.071 0.929 36 H 0.396 0.604 37 H 0.069 0.931 38 H 0.079 0.921 39 H 0.121 0.879 40 H 0.127 0.873 41 H 0.121 0.879 42 H 0.114 0.886 43 H 0.295 0.705 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.237 -1.427 7.694 8.898 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.094 3.906 3 C -0.008 4.008 4 O -0.372 6.372 5 C -0.133 4.133 6 C 0.039 3.961 7 H 0.115 0.885 8 O -0.373 6.373 9 C -0.039 4.039 10 N -0.827 5.827 11 S 2.829 3.171 12 O -0.988 6.988 13 O -0.982 6.982 14 C -0.891 4.891 15 C -0.034 4.034 16 C -0.269 4.269 17 C -0.095 4.095 18 C -0.205 4.205 19 C 0.161 3.839 20 C -0.519 4.519 21 H 0.122 0.878 22 C -0.168 4.168 23 N -0.421 5.421 24 Si 0.777 3.223 25 H -0.190 1.190 26 H -0.179 1.179 27 H -0.167 1.167 28 H 0.108 0.892 29 H 0.088 0.912 30 H 0.089 0.911 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.247 0.753 34 H 0.124 0.876 35 H 0.090 0.910 36 H 0.247 0.753 37 H 0.087 0.913 38 H 0.097 0.903 39 H 0.139 0.861 40 H 0.145 0.855 41 H 0.139 0.861 42 H 0.132 0.868 43 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges -5.011 -1.700 7.716 9.356 hybrid contribution 1.680 0.157 -0.951 1.937 sum -3.330 -1.543 6.766 7.697 Atomic orbital electron populations 1.22465 0.92539 1.03361 1.04557 1.20615 0.95019 0.90300 0.84688 1.22409 0.97201 0.93007 0.88151 1.86314 1.81128 1.28246 1.41486 1.22528 1.02248 0.92833 0.95698 1.23000 0.90819 0.94298 0.87970 0.88530 1.86465 1.58828 1.35285 1.56771 1.22930 0.95662 0.88187 0.97073 1.58265 1.64416 1.39329 1.20683 1.00129 0.72907 0.72802 0.71301 1.93428 1.87800 1.47957 1.69634 1.93398 1.46811 1.71401 1.86606 1.30166 1.15377 1.10390 1.33212 1.20516 0.98508 0.91525 0.92876 1.20870 0.93157 0.99920 1.12988 1.21241 0.96597 0.95287 0.96380 1.21588 0.99774 0.94581 1.04575 1.17324 0.89465 0.93235 0.83915 1.20553 0.99506 0.94153 1.37649 0.87774 1.26654 0.94752 1.04037 0.91348 1.69807 1.07216 1.37335 1.27704 0.85529 0.80204 0.77093 0.79486 1.19032 1.17942 1.16683 0.89156 0.91212 0.91117 0.94276 0.94101 0.75318 0.87552 0.90996 0.75345 0.91254 0.90288 0.86150 0.85540 0.86113 0.86843 0.89339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -5.00 8.20 71.98 0.59 -4.41 16 2 C 0.18 5.83 0.70 3.95 0.00 5.83 16 3 C 0.07 2.37 5.88 71.98 0.42 2.80 16 4 O -0.56 -14.99 12.71 -148.98 -1.89 -16.89 16 5 C -0.09 -2.65 5.45 31.78 0.17 -2.48 16 6 C 0.10 2.69 4.43 31.98 0.14 2.83 16 7 H 0.10 2.12 8.14 -2.39 -0.02 2.10 16 8 O -0.57 -14.36 13.47 -148.98 -2.01 -16.37 16 9 C 0.09 3.03 5.16 86.86 0.45 3.48 16 10 N -0.99 -36.98 3.11 -463.06 -1.44 -38.42 16 11 S 2.73 120.32 4.87 -56.49 -0.28 120.05 16 12 O -1.00 -48.90 14.95 -128.00 -1.91 -50.82 16 13 O -0.99 -43.38 13.62 -128.00 -1.74 -45.13 16 14 C -0.80 -37.94 5.97 22.73 0.14 -37.80 16 15 C -0.01 -0.64 9.54 22.22 0.21 -0.43 16 16 C -0.25 -10.34 10.05 22.46 0.23 -10.11 16 17 C -0.08 -3.31 10.02 22.22 0.22 -3.09 16 18 C -0.19 -9.14 8.66 22.73 0.20 -8.94 16 19 C 0.17 8.39 5.55 -21.29 -0.12 8.27 16 20 C -0.49 -24.20 6.08 23.46 0.14 -24.06 16 21 H 0.10 5.23 4.67 -2.91 -0.01 5.21 16 22 C 0.05 2.34 4.89 85.26 0.42 2.76 16 23 N -0.80 -37.08 10.89 21.83 0.24 -36.84 16 24 Si 0.96 34.39 29.57 68.60 2.03 36.42 16 25 H -0.27 -9.55 7.11 99.48 0.71 -8.85 16 26 H -0.26 -8.48 7.11 99.48 0.71 -7.77 16 27 H -0.24 -8.39 7.11 99.48 0.71 -7.68 16 28 H 0.09 2.29 7.72 -2.39 -0.02 2.27 16 29 H 0.07 2.35 5.66 -2.39 -0.01 2.34 16 30 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 31 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.04 1.44 7.60 -2.39 -0.02 1.42 16 33 H 0.40 7.16 9.12 -74.05 -0.68 6.49 16 34 H 0.11 2.49 7.83 -2.39 -0.02 2.47 16 35 H 0.07 2.22 7.85 -2.39 -0.02 2.20 16 36 H 0.40 6.67 9.12 -74.05 -0.68 5.99 16 37 H 0.07 2.73 6.72 -2.39 -0.02 2.71 16 38 H 0.08 2.72 7.61 -2.39 -0.02 2.70 16 39 H 0.12 4.85 7.32 -2.91 -0.02 4.83 16 40 H 0.13 4.36 8.06 -2.91 -0.02 4.34 16 41 H 0.12 4.45 8.06 -2.91 -0.02 4.43 16 42 H 0.11 5.72 6.25 -2.91 -0.02 5.70 16 43 H 0.30 12.37 8.30 -92.71 -0.77 11.60 16 Total: -1.00 -63.56 351.37 -4.07 -67.63 By element: Atomic # 1 Polarization: 45.99 SS G_CDS: -0.28 Total: 45.72 kcal Atomic # 6 Polarization: -68.57 SS G_CDS: 3.21 Total: -65.36 kcal Atomic # 7 Polarization: -74.06 SS G_CDS: -1.20 Total: -75.26 kcal Atomic # 8 Polarization: -121.64 SS G_CDS: -7.56 Total: -129.20 kcal Atomic # 14 Polarization: 34.39 SS G_CDS: 2.03 Total: 36.42 kcal Atomic # 16 Polarization: 120.32 SS G_CDS: -0.28 Total: 120.05 kcal Total: -63.56 -4.07 -67.63 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464116744.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.684 kcal (2) G-P(sol) polarization free energy of solvation -63.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -168.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.071 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds