Wall clock time and date at job start Sat Apr 11 2020 06:15:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.99545 * 2 1 4 4 O 1.42903 * 109.46986 * 59.64565 * 3 2 1 5 5 C 1.54321 * 109.87837 * 121.09743 * 2 1 3 6 6 C 1.55160 * 103.09902 * 141.70001 * 5 2 1 7 7 H 1.08999 * 111.00341 * 82.48095 * 6 5 2 8 8 O 1.42901 * 111.00105 * 206.29531 * 6 5 2 9 9 C 1.54901 * 101.57951 * 324.40543 * 6 5 2 10 10 N 1.47422 * 104.83611 * 37.01493 * 9 6 5 11 11 S 1.65593 * 125.65372 * 155.92905 * 10 9 6 12 12 O 1.42097 * 106.40542 * 203.51302 * 11 10 9 13 13 O 1.42102 * 106.40413 * 336.42900 * 11 10 9 14 14 C 1.76198 * 107.22062 * 89.97045 * 11 10 9 15 15 C 1.37640 * 120.12621 * 114.73050 * 14 11 10 16 16 C 1.38621 * 120.24524 * 179.72603 * 15 14 11 17 17 C 1.38648 * 120.50227 * 0.54514 * 16 15 14 18 18 C 1.37600 * 120.25113 * 359.73359 * 17 16 15 19 19 C 1.40694 * 120.12966 * 295.00290 * 14 11 10 20 20 C 1.41399 * 120.24189 * 359.97438 * 19 14 11 21 21 H 1.07998 * 119.99858 * 329.03029 * 20 19 14 22 22 C 1.39949 * 119.99783 * 149.03025 * 20 19 14 23 23 N 1.30823 * 119.99943 * 162.82640 * 22 20 19 24 24 Si 1.86800 * 119.99746 * 342.82386 * 22 20 19 25 25 H 1.48498 * 109.47208 * 95.36048 * 24 22 20 26 26 H 1.48505 * 109.46863 * 215.35679 * 24 22 20 27 27 H 1.48500 * 109.47538 * 335.35568 * 24 22 20 28 28 H 1.09005 * 109.46933 * 300.35997 * 1 2 3 29 29 H 1.08995 * 109.47018 * 60.35270 * 1 2 3 30 30 H 1.08996 * 109.47141 * 180.36043 * 1 2 3 31 31 H 1.09002 * 109.46372 * 179.63641 * 3 2 1 32 32 H 1.08993 * 109.47610 * 299.63929 * 3 2 1 33 33 H 0.96702 * 113.99565 * 179.97438 * 4 3 2 34 34 H 1.08993 * 110.72542 * 23.24382 * 5 2 1 35 35 H 1.09002 * 110.71628 * 260.14798 * 5 2 1 36 36 H 0.96700 * 113.99772 * 180.02562 * 8 6 5 37 37 H 1.09004 * 110.36501 * 155.84949 * 9 6 5 38 38 H 1.08999 * 110.36936 * 278.06238 * 9 6 5 39 39 H 1.08005 * 119.87700 * 359.96977 * 15 14 11 40 40 H 1.07999 * 119.74795 * 180.25342 * 16 15 14 41 41 H 1.08001 * 119.88082 * 179.74732 * 17 16 15 42 42 H 1.07992 * 120.13022 * 180.02562 * 18 17 16 43 43 H 0.96994 * 119.99732 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0533 1.4378 0.0000 4 8 1.5763 2.1182 1.1626 5 6 2.0548 -0.7496 1.2427 6 6 3.2897 -1.5141 0.6968 7 1 4.1668 -0.8678 0.6652 8 8 3.5489 -2.6873 1.4705 9 6 2.8201 -1.8831 -0.7324 10 7 2.0353 -0.7197 -1.1841 11 16 1.7642 -0.2914 -2.7605 12 8 1.4762 1.1000 -2.7545 13 8 2.8212 -0.8629 -3.5191 14 6 0.2873 -1.1030 -3.2750 15 6 -0.8296 -0.3661 -3.5972 16 6 -1.9910 -1.0017 -4.0077 17 6 -2.0457 -2.3848 -4.0878 18 6 -0.9430 -3.1420 -3.7651 19 6 0.2434 -2.5072 -3.3525 20 6 1.3830 -3.2748 -3.0189 21 1 2.3719 -2.8748 -3.1876 22 6 1.2295 -4.5530 -2.4701 23 7 2.2346 -5.3904 -2.4711 24 14 -0.4107 -5.0634 -1.7361 25 1 -1.2008 -5.8008 -2.7545 26 1 -0.1756 -5.9410 -0.5613 27 1 -1.1595 -3.8544 -1.3087 28 1 -0.3633 0.5194 0.8868 29 1 -0.3633 0.5083 -0.8931 30 1 -0.3633 -1.0276 0.0065 31 1 3.1432 1.4277 0.0065 32 1 1.7000 1.9530 -0.8931 33 1 1.8700 3.0372 1.2287 34 1 1.3051 -1.4459 1.6182 35 1 2.3500 -0.0461 2.0212 36 1 4.3120 -3.1978 1.1671 37 1 3.6788 -2.0380 -1.3857 38 1 2.1968 -2.7769 -0.7081 39 1 -0.7997 0.7117 -3.5338 40 1 -2.8614 -0.4154 -4.2626 41 1 -2.9570 -2.8698 -4.4050 42 1 -0.9876 -4.2191 -3.8286 43 1 2.1283 -6.2761 -2.0904 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001464116749.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:15 Heat of formation + Delta-G solvation = -146.765029 kcal Electronic energy + Delta-G solvation = -30494.112794 eV Core-core repulsion = 26438.154346 eV Total energy + Delta-G solvation = -4055.958448 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -39.38363 -37.91109 -36.83185 -36.30000 -35.30597 -35.04533 -33.92800 -31.04456 -30.73072 -30.15404 -29.57443 -26.28894 -25.50886 -24.67971 -22.11547 -21.43062 -21.22854 -20.19987 -18.07193 -17.79170 -17.25216 -17.20583 -16.87373 -16.28319 -15.46178 -15.38705 -14.78585 -14.44893 -14.28529 -14.10910 -13.71784 -13.66653 -13.51844 -13.18861 -12.94646 -12.75899 -12.44585 -12.29310 -11.99739 -11.86338 -11.77775 -11.51145 -11.40825 -11.34761 -11.30343 -11.02866 -10.97437 -10.74549 -10.57457 -10.44259 -10.32134 -10.04550 -9.77177 -9.64844 -9.51074 -9.33353 -8.54216 -8.25105 -7.87264 -7.25593 -4.92384 1.27641 2.03568 2.48641 2.91437 3.02354 3.11995 3.54331 3.73700 4.17973 4.31334 4.42631 4.60490 4.69106 4.89157 5.06223 5.19041 5.30953 5.36328 5.39477 5.59699 5.71670 5.79077 5.87604 5.90102 6.05749 6.12212 6.13818 6.17277 6.20264 6.35399 6.40481 6.56323 6.58328 6.60463 6.68593 6.89095 6.95977 7.05476 7.23535 7.39760 7.52400 7.70291 7.78780 7.80444 8.09239 8.26968 8.47808 9.71694 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010913 B = 0.007301 C = 0.005583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.155911 B = 3833.922533 C = 5013.763309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.189 3.811 3 C 0.051 3.949 4 O -0.568 6.568 5 C -0.105 4.105 6 C 0.088 3.912 7 H 0.067 0.933 8 O -0.558 6.558 9 C 0.097 3.903 10 N -0.992 5.992 11 S 2.717 3.283 12 O -0.989 6.989 13 O -0.964 6.964 14 C -0.767 4.767 15 C 0.018 3.982 16 C -0.257 4.257 17 C -0.044 4.044 18 C -0.233 4.233 19 C 0.166 3.834 20 C -0.459 4.459 21 H 0.128 0.872 22 C 0.093 3.907 23 N -0.774 5.774 24 Si 0.901 3.099 25 H -0.267 1.267 26 H -0.283 1.283 27 H -0.240 1.240 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.066 0.934 31 H 0.044 0.956 32 H 0.085 0.915 33 H 0.377 0.623 34 H 0.085 0.915 35 H 0.087 0.913 36 H 0.380 0.620 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.113 0.887 40 H 0.101 0.899 41 H 0.099 0.901 42 H 0.106 0.894 43 H 0.292 0.708 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.202 6.073 7.114 9.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.101 3.899 3 C -0.028 4.028 4 O -0.373 6.373 5 C -0.144 4.144 6 C 0.028 3.972 7 H 0.084 0.916 8 O -0.362 6.362 9 C -0.029 4.029 10 N -0.829 5.829 11 S 2.817 3.183 12 O -0.980 6.980 13 O -0.954 6.954 14 C -0.862 4.862 15 C -0.002 4.002 16 C -0.277 4.277 17 C -0.063 4.063 18 C -0.252 4.252 19 C 0.161 3.839 20 C -0.486 4.486 21 H 0.146 0.854 22 C -0.131 4.131 23 N -0.395 5.395 24 Si 0.727 3.273 25 H -0.193 1.193 26 H -0.210 1.210 27 H -0.163 1.163 28 H 0.093 0.907 29 H 0.081 0.919 30 H 0.085 0.915 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.224 0.776 34 H 0.103 0.897 35 H 0.105 0.895 36 H 0.228 0.772 37 H 0.101 0.899 38 H 0.111 0.889 39 H 0.131 0.869 40 H 0.119 0.881 41 H 0.117 0.883 42 H 0.123 0.877 43 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.161 6.042 7.039 9.278 hybrid contribution -0.610 -0.696 -0.317 0.978 sum -0.449 5.346 6.722 8.600 Atomic orbital electron populations 1.22214 0.93551 1.03014 1.03086 1.20466 0.94590 0.89891 0.84971 1.22946 0.97396 0.93137 0.89322 1.86378 1.77118 1.28915 1.44870 1.22606 0.96864 0.98506 0.96389 1.23036 0.97168 0.86598 0.90442 0.91553 1.86473 1.53813 1.39062 1.56884 1.22805 0.96087 0.89330 0.94646 1.58598 1.65679 1.37620 1.21038 1.00646 0.74501 0.72309 0.70885 1.93401 1.86778 1.31635 1.86197 1.93509 1.55149 1.79081 1.67709 1.29844 1.19344 1.04967 1.32058 1.20362 0.91453 0.97788 0.90599 1.20494 0.98169 0.94203 1.14879 1.20842 0.96422 0.94193 0.94803 1.21218 0.95535 0.98376 1.10080 1.17067 0.92012 0.89575 0.85291 1.20356 0.96204 0.98496 1.33545 0.85440 1.26183 0.98661 0.94854 0.93413 1.69671 1.33108 1.06229 1.30465 0.86452 0.81800 0.80361 0.78735 1.19307 1.20982 1.16267 0.90723 0.91883 0.91454 0.93729 0.89694 0.77607 0.89665 0.89463 0.77239 0.89942 0.88907 0.86945 0.88111 0.88295 0.87657 0.89720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.64 8.35 37.16 0.31 -2.33 16 2 C 0.19 3.06 0.73 -130.58 -0.10 2.97 16 3 C 0.05 0.75 5.84 37.16 0.22 0.97 16 4 O -0.57 -7.09 12.26 -35.23 -0.43 -7.52 16 5 C -0.10 -1.56 5.64 -24.90 -0.14 -1.70 16 6 C 0.09 1.30 4.43 -24.59 -0.11 1.19 16 7 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 8 O -0.56 -7.95 13.47 -35.23 -0.47 -8.42 16 9 C 0.10 1.73 5.21 -2.54 -0.01 1.72 16 10 N -0.99 -18.40 3.10 -97.41 -0.30 -18.70 16 11 S 2.72 58.13 4.87 -107.50 -0.52 57.61 16 12 O -0.99 -20.77 13.85 -57.18 -0.79 -21.57 16 13 O -0.96 -23.36 15.01 -57.18 -0.86 -24.22 16 14 C -0.77 -17.44 5.96 -38.87 -0.23 -17.68 16 15 C 0.02 0.38 9.45 -39.66 -0.37 0.00 16 16 C -0.26 -5.16 10.05 -39.29 -0.39 -5.55 16 17 C -0.04 -0.90 10.02 -39.66 -0.40 -1.30 16 18 C -0.23 -5.32 7.15 -38.87 -0.28 -5.60 16 19 C 0.17 3.99 5.08 -106.82 -0.54 3.45 16 20 C -0.46 -11.34 6.56 -37.74 -0.25 -11.59 16 21 H 0.13 3.36 5.13 -52.49 -0.27 3.10 16 22 C 0.09 2.19 4.88 -17.34 -0.08 2.10 16 23 N -0.77 -18.24 13.93 55.55 0.77 -17.47 16 24 Si 0.90 19.01 24.52 -169.99 -4.17 14.85 16 25 H -0.27 -5.51 6.73 56.52 0.38 -5.13 16 26 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 27 H -0.24 -5.21 6.84 56.52 0.39 -4.82 16 28 H 0.07 1.10 7.70 -51.93 -0.40 0.70 16 29 H 0.06 1.08 7.73 -51.93 -0.40 0.68 16 30 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 31 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 1.38 5.68 -51.93 -0.29 1.08 16 33 H 0.38 2.96 9.12 45.56 0.42 3.37 16 34 H 0.08 1.31 7.85 -51.93 -0.41 0.90 16 35 H 0.09 1.18 7.30 -51.93 -0.38 0.80 16 36 H 0.38 3.98 9.12 45.56 0.42 4.40 16 37 H 0.08 1.50 7.75 -51.93 -0.40 1.10 16 38 H 0.09 1.85 6.42 -51.93 -0.33 1.51 16 39 H 0.11 2.16 7.32 -52.48 -0.38 1.78 16 40 H 0.10 1.73 8.06 -52.49 -0.42 1.31 16 41 H 0.10 1.72 8.06 -52.49 -0.42 1.30 16 42 H 0.11 2.36 4.82 -52.49 -0.25 2.10 16 43 H 0.29 6.21 8.30 -40.82 -0.34 5.87 16 LS Contribution 345.80 15.07 5.21 5.21 Total: -1.00 -29.62 345.80 -7.93 -37.55 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: -3.98 Total: 16.03 kcal Atomic # 6 Polarization: -30.96 SS G_CDS: -2.38 Total: -33.35 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: 0.47 Total: -36.17 kcal Atomic # 8 Polarization: -59.17 SS G_CDS: -2.56 Total: -61.72 kcal Atomic # 14 Polarization: 19.01 SS G_CDS: -4.17 Total: 14.85 kcal Atomic # 16 Polarization: 58.13 SS G_CDS: -0.52 Total: 57.61 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -29.62 -7.93 -37.55 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464116749.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.217 kcal (2) G-P(sol) polarization free energy of solvation -29.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -138.839 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.926 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -146.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds