Wall clock time and date at job start Sat Apr 11 2020 06:15:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.53002 * 109.99545 * 2 1 4 4 O 1.42903 * 109.46986 * 59.64565 * 3 2 1 5 5 C 1.54321 * 109.87837 * 121.09743 * 2 1 3 6 6 C 1.55160 * 103.09902 * 141.70001 * 5 2 1 7 7 H 1.08999 * 111.00341 * 82.48095 * 6 5 2 8 8 O 1.42901 * 111.00105 * 206.29531 * 6 5 2 9 9 C 1.54901 * 101.57951 * 324.40543 * 6 5 2 10 10 N 1.47422 * 104.83611 * 37.01493 * 9 6 5 11 11 S 1.65593 * 125.65372 * 155.92905 * 10 9 6 12 12 O 1.42097 * 106.40542 * 203.51302 * 11 10 9 13 13 O 1.42102 * 106.40413 * 336.42900 * 11 10 9 14 14 C 1.76198 * 107.22062 * 89.97045 * 11 10 9 15 15 C 1.37640 * 120.12621 * 114.73050 * 14 11 10 16 16 C 1.38621 * 120.24524 * 179.72603 * 15 14 11 17 17 C 1.38648 * 120.50227 * 0.54514 * 16 15 14 18 18 C 1.37600 * 120.25113 * 359.73359 * 17 16 15 19 19 C 1.40694 * 120.12966 * 295.00290 * 14 11 10 20 20 C 1.41399 * 120.24189 * 359.97438 * 19 14 11 21 21 H 1.07998 * 119.99858 * 329.03029 * 20 19 14 22 22 C 1.39949 * 119.99783 * 149.03025 * 20 19 14 23 23 N 1.30823 * 119.99943 * 162.82640 * 22 20 19 24 24 Si 1.86800 * 119.99746 * 342.82386 * 22 20 19 25 25 H 1.48498 * 109.47208 * 95.36048 * 24 22 20 26 26 H 1.48505 * 109.46863 * 215.35679 * 24 22 20 27 27 H 1.48500 * 109.47538 * 335.35568 * 24 22 20 28 28 H 1.09005 * 109.46933 * 300.35997 * 1 2 3 29 29 H 1.08995 * 109.47018 * 60.35270 * 1 2 3 30 30 H 1.08996 * 109.47141 * 180.36043 * 1 2 3 31 31 H 1.09002 * 109.46372 * 179.63641 * 3 2 1 32 32 H 1.08993 * 109.47610 * 299.63929 * 3 2 1 33 33 H 0.96702 * 113.99565 * 179.97438 * 4 3 2 34 34 H 1.08993 * 110.72542 * 23.24382 * 5 2 1 35 35 H 1.09002 * 110.71628 * 260.14798 * 5 2 1 36 36 H 0.96700 * 113.99772 * 180.02562 * 8 6 5 37 37 H 1.09004 * 110.36501 * 155.84949 * 9 6 5 38 38 H 1.08999 * 110.36936 * 278.06238 * 9 6 5 39 39 H 1.08005 * 119.87700 * 359.96977 * 15 14 11 40 40 H 1.07999 * 119.74795 * 180.25342 * 16 15 14 41 41 H 1.08001 * 119.88082 * 179.74732 * 17 16 15 42 42 H 1.07992 * 120.13022 * 180.02562 * 18 17 16 43 43 H 0.96994 * 119.99732 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0533 1.4378 0.0000 4 8 1.5763 2.1182 1.1626 5 6 2.0548 -0.7496 1.2427 6 6 3.2897 -1.5141 0.6968 7 1 4.1668 -0.8678 0.6652 8 8 3.5489 -2.6873 1.4705 9 6 2.8201 -1.8831 -0.7324 10 7 2.0353 -0.7197 -1.1841 11 16 1.7642 -0.2914 -2.7605 12 8 1.4762 1.1000 -2.7545 13 8 2.8212 -0.8629 -3.5191 14 6 0.2873 -1.1030 -3.2750 15 6 -0.8296 -0.3661 -3.5972 16 6 -1.9910 -1.0017 -4.0077 17 6 -2.0457 -2.3848 -4.0878 18 6 -0.9430 -3.1420 -3.7651 19 6 0.2434 -2.5072 -3.3525 20 6 1.3830 -3.2748 -3.0189 21 1 2.3719 -2.8748 -3.1876 22 6 1.2295 -4.5530 -2.4701 23 7 2.2346 -5.3904 -2.4711 24 14 -0.4107 -5.0634 -1.7361 25 1 -1.2008 -5.8008 -2.7545 26 1 -0.1756 -5.9410 -0.5613 27 1 -1.1595 -3.8544 -1.3087 28 1 -0.3633 0.5194 0.8868 29 1 -0.3633 0.5083 -0.8931 30 1 -0.3633 -1.0276 0.0065 31 1 3.1432 1.4277 0.0065 32 1 1.7000 1.9530 -0.8931 33 1 1.8700 3.0372 1.2287 34 1 1.3051 -1.4459 1.6182 35 1 2.3500 -0.0461 2.0212 36 1 4.3120 -3.1978 1.1671 37 1 3.6788 -2.0380 -1.3857 38 1 2.1968 -2.7769 -0.7081 39 1 -0.7997 0.7117 -3.5338 40 1 -2.8614 -0.4154 -4.2626 41 1 -2.9570 -2.8698 -4.4050 42 1 -0.9876 -4.2191 -3.8286 43 1 2.1283 -6.2761 -2.0904 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001464116749.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:14 Heat of formation + Delta-G solvation = -172.034709 kcal Electronic energy + Delta-G solvation = -30495.208570 eV Core-core repulsion = 26438.154346 eV Total energy + Delta-G solvation = -4057.054224 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.65157 -39.60649 -38.34306 -37.59665 -36.80269 -36.46037 -35.67071 -32.57169 -32.26334 -31.82704 -30.85347 -27.52310 -27.23986 -25.97865 -23.79109 -22.95176 -22.71974 -21.54812 -19.65660 -19.55102 -18.60334 -18.35600 -18.20583 -17.83922 -17.15861 -16.86171 -16.20548 -15.95825 -15.64804 -15.49905 -15.31585 -15.21579 -14.86444 -14.65174 -14.51130 -14.20564 -13.97405 -13.67288 -13.60356 -13.26424 -13.18057 -13.08842 -13.03884 -12.96981 -12.73489 -12.70842 -12.45978 -12.32245 -12.17446 -11.80350 -11.71892 -11.53668 -11.24577 -11.07482 -10.98039 -10.71157 -10.06498 -9.87216 -9.60094 -9.01652 -6.72891 -0.36410 0.32873 0.76901 1.21000 1.33881 1.42045 2.01567 2.05216 2.46786 2.85271 3.11784 3.25266 3.38578 3.41881 3.64555 3.84638 4.04672 4.12324 4.17353 4.20259 4.29300 4.37358 4.44238 4.59620 4.67849 4.71445 4.77595 4.79869 4.88279 4.93125 4.98092 5.11126 5.15320 5.20308 5.30194 5.31494 5.37227 5.49991 5.62681 5.71334 5.82184 6.06557 6.26894 6.51726 6.68528 6.83189 6.93728 8.01429 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.010913 B = 0.007301 C = 0.005583 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2565.155911 B = 3833.922533 C = 5013.763309 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.179 3.821 3 C 0.059 3.941 4 O -0.570 6.570 5 C -0.099 4.099 6 C 0.100 3.900 7 H 0.092 0.908 8 O -0.566 6.566 9 C 0.096 3.904 10 N -0.990 5.990 11 S 2.727 3.273 12 O -0.988 6.988 13 O -1.000 7.000 14 C -0.782 4.782 15 C 0.005 3.995 16 C -0.248 4.248 17 C -0.041 4.041 18 C -0.258 4.258 19 C 0.148 3.852 20 C -0.482 4.482 21 H 0.100 0.900 22 C 0.071 3.929 23 N -0.803 5.803 24 Si 0.942 3.058 25 H -0.258 1.258 26 H -0.272 1.272 27 H -0.252 1.252 28 H 0.093 0.907 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.059 0.941 32 H 0.067 0.933 33 H 0.399 0.601 34 H 0.077 0.923 35 H 0.108 0.892 36 H 0.396 0.604 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.130 0.870 40 H 0.138 0.862 41 H 0.136 0.864 42 H 0.106 0.894 43 H 0.301 0.699 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.269 7.247 8.420 11.181 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.092 3.908 3 C -0.021 4.021 4 O -0.378 6.378 5 C -0.138 4.138 6 C 0.040 3.960 7 H 0.110 0.890 8 O -0.373 6.373 9 C -0.030 4.030 10 N -0.828 5.828 11 S 2.827 3.173 12 O -0.979 6.979 13 O -0.991 6.991 14 C -0.876 4.876 15 C -0.015 4.015 16 C -0.268 4.268 17 C -0.060 4.060 18 C -0.278 4.278 19 C 0.144 3.856 20 C -0.510 4.510 21 H 0.117 0.883 22 C -0.150 4.150 23 N -0.426 5.426 24 Si 0.765 3.235 25 H -0.183 1.183 26 H -0.198 1.198 27 H -0.175 1.175 28 H 0.112 0.888 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.085 0.915 33 H 0.250 0.750 34 H 0.096 0.904 35 H 0.126 0.874 36 H 0.246 0.754 37 H 0.087 0.913 38 H 0.086 0.914 39 H 0.147 0.853 40 H 0.156 0.844 41 H 0.154 0.846 42 H 0.123 0.877 43 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -1.304 7.224 8.334 11.106 hybrid contribution -0.218 -0.916 -0.742 1.199 sum -1.522 6.308 7.593 9.988 Atomic orbital electron populations 1.22201 0.93902 1.02142 1.03423 1.20739 0.94521 0.91115 0.84451 1.22687 0.98054 0.91885 0.89450 1.86326 1.77259 1.30697 1.43471 1.22594 0.96589 0.98597 0.95989 1.22979 0.98056 0.87046 0.87966 0.89006 1.86437 1.54991 1.39259 1.56635 1.22786 0.95066 0.88407 0.96757 1.58331 1.65685 1.38046 1.20758 1.00152 0.73796 0.72051 0.71321 1.93397 1.86629 1.31290 1.86552 1.93464 1.56433 1.79723 1.69437 1.30144 1.20402 1.04862 1.32217 1.20708 0.91497 0.98765 0.90528 1.20987 0.98838 0.94444 1.12567 1.21287 0.96981 0.94552 0.93161 1.21371 0.96136 0.98809 1.11469 1.17281 0.92502 0.90293 0.85569 1.20190 0.95338 0.99587 1.35842 0.88258 1.26595 1.00671 0.94482 0.93228 1.69672 1.34260 1.06929 1.31744 0.85833 0.79232 0.79713 0.78696 1.18328 1.19799 1.17511 0.88800 0.93001 0.92933 0.92317 0.91479 0.75033 0.90385 0.87360 0.75401 0.91286 0.91431 0.85259 0.84412 0.84607 0.87675 0.88800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -5.06 8.35 71.98 0.60 -4.46 16 2 C 0.18 5.61 0.73 3.87 0.00 5.61 16 3 C 0.06 1.61 5.84 71.98 0.42 2.03 16 4 O -0.57 -12.45 12.26 -148.98 -1.83 -14.28 16 5 C -0.10 -2.75 5.64 31.78 0.18 -2.58 16 6 C 0.10 2.83 4.43 31.98 0.14 2.97 16 7 H 0.09 2.16 8.14 -2.39 -0.02 2.14 16 8 O -0.57 -15.43 13.47 -148.98 -2.01 -17.44 16 9 C 0.10 3.51 5.21 86.85 0.45 3.96 16 10 N -0.99 -37.05 3.10 -462.10 -1.43 -38.48 16 11 S 2.73 119.04 4.87 -56.49 -0.28 118.77 16 12 O -0.99 -41.36 13.85 -128.00 -1.77 -43.13 16 13 O -1.00 -50.64 15.01 -128.00 -1.92 -52.56 16 14 C -0.78 -35.86 5.96 22.73 0.14 -35.72 16 15 C 0.00 0.19 9.45 22.22 0.21 0.40 16 16 C -0.25 -9.25 10.05 22.46 0.23 -9.03 16 17 C -0.04 -1.60 10.02 22.22 0.22 -1.38 16 18 C -0.26 -11.68 7.15 22.73 0.16 -11.52 16 19 C 0.15 7.28 5.08 -21.29 -0.11 7.17 16 20 C -0.48 -24.84 6.56 23.46 0.15 -24.68 16 21 H 0.10 5.59 5.13 -2.91 -0.01 5.58 16 22 C 0.07 3.46 4.88 85.26 0.42 3.88 16 23 N -0.80 -39.17 13.93 21.83 0.30 -38.86 16 24 Si 0.94 39.24 24.52 68.60 1.68 40.92 16 25 H -0.26 -10.24 6.73 99.48 0.67 -9.58 16 26 H -0.27 -10.66 7.11 99.48 0.71 -9.95 16 27 H -0.25 -10.84 6.84 99.48 0.68 -10.16 16 28 H 0.09 2.59 7.70 -2.38 -0.02 2.57 16 29 H 0.05 1.74 7.73 -2.39 -0.02 1.73 16 30 H 0.05 1.80 8.14 -2.39 -0.02 1.78 16 31 H 0.06 1.43 8.14 -2.39 -0.02 1.41 16 32 H 0.07 2.08 5.68 -2.39 -0.01 2.07 16 33 H 0.40 4.91 9.12 -74.06 -0.68 4.24 16 34 H 0.08 2.29 7.85 -2.39 -0.02 2.27 16 35 H 0.11 2.58 7.30 -2.39 -0.02 2.57 16 36 H 0.40 7.90 9.12 -74.06 -0.68 7.22 16 37 H 0.07 2.66 7.75 -2.39 -0.02 2.64 16 38 H 0.07 2.82 6.42 -2.39 -0.02 2.80 16 39 H 0.13 4.76 7.32 -2.91 -0.02 4.73 16 40 H 0.14 4.10 8.06 -2.91 -0.02 4.07 16 41 H 0.14 4.19 8.06 -2.91 -0.02 4.17 16 42 H 0.11 4.66 4.82 -2.91 -0.01 4.65 16 43 H 0.30 13.09 8.30 -92.71 -0.77 12.33 16 Total: -1.00 -64.77 345.80 -4.37 -69.14 By element: Atomic # 1 Polarization: 39.62 SS G_CDS: -0.34 Total: 39.28 kcal Atomic # 6 Polarization: -66.57 SS G_CDS: 3.22 Total: -63.35 kcal Atomic # 7 Polarization: -76.22 SS G_CDS: -1.13 Total: -77.35 kcal Atomic # 8 Polarization: -119.88 SS G_CDS: -7.53 Total: -127.41 kcal Atomic # 14 Polarization: 39.24 SS G_CDS: 1.68 Total: 40.92 kcal Atomic # 16 Polarization: 119.04 SS G_CDS: -0.28 Total: 118.77 kcal Total: -64.77 -4.37 -69.14 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001464116749.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.894 kcal (2) G-P(sol) polarization free energy of solvation -64.767 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.374 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.141 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.035 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds