Wall clock time and date at job start Sat Apr 11 2020 06:15:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52999 * 109.47337 * 2 1 4 4 N 1.46500 * 109.47334 * 174.67785 * 3 2 1 5 5 C 1.46493 * 120.00358 * 86.42763 * 4 3 2 6 6 H 1.09000 * 109.47663 * 185.31529 * 5 4 3 7 7 C 1.53002 * 109.47148 * 305.31440 * 5 4 3 8 8 C 1.50703 * 109.47088 * 65.31017 * 5 4 3 9 9 O 1.20828 * 119.99970 * 0.02562 * 8 5 4 10 10 O 1.34229 * 119.99997 * 180.02562 * 8 5 4 11 11 S 1.65601 * 119.99539 * 266.42993 * 4 3 2 12 12 O 1.42097 * 106.40705 * 23.53986 * 11 4 3 13 13 O 1.42104 * 106.39982 * 156.46023 * 11 4 3 14 14 C 1.76199 * 107.21682 * 269.99777 * 11 4 3 15 15 C 1.38664 * 119.87498 * 269.73077 * 14 11 4 16 16 C 1.38617 * 120.49966 * 179.72045 * 15 14 11 17 17 C 1.37639 * 120.24578 * 0.55360 * 16 15 14 18 18 C 1.40694 * 119.74917 * 359.72349 * 17 16 15 19 19 C 1.41394 * 120.24736 * 180.02562 * 18 17 16 20 20 H 1.08003 * 119.99810 * 203.85459 * 19 18 17 21 21 C 1.39940 * 119.99900 * 23.85214 * 19 18 17 22 22 N 1.30826 * 120.00158 * 16.78269 * 21 19 18 23 23 Si 1.86797 * 119.99975 * 196.77727 * 21 19 18 24 24 H 1.48503 * 109.47333 * 0.02562 * 23 21 19 25 25 H 1.48505 * 109.47192 * 120.00289 * 23 21 19 26 26 H 1.48500 * 109.47240 * 240.00375 * 23 21 19 27 27 C 1.37599 * 119.87661 * 90.00350 * 14 11 4 28 28 H 1.09002 * 109.47294 * 179.97438 * 1 2 3 29 29 H 1.08997 * 109.47738 * 299.99914 * 1 2 3 30 30 H 1.08999 * 109.47149 * 60.00548 * 1 2 3 31 31 H 1.09006 * 109.47578 * 239.99978 * 2 1 3 32 32 H 1.09004 * 109.46993 * 120.00159 * 2 1 3 33 33 H 1.09005 * 109.47033 * 54.67434 * 3 2 1 34 34 H 1.08999 * 109.46751 * 294.67767 * 3 2 1 35 35 H 1.08992 * 109.47369 * 186.71906 * 7 5 4 36 36 H 1.09007 * 109.47077 * 306.72126 * 7 5 4 37 37 H 1.09003 * 109.47332 * 66.71440 * 7 5 4 38 38 H 0.96703 * 116.99908 * 180.02562 * 10 8 5 39 39 H 1.07998 * 119.74803 * 0.02562 * 15 14 11 40 40 H 1.07998 * 119.87834 * 180.25298 * 16 15 14 41 41 H 1.08004 * 120.12714 * 179.74640 * 17 16 15 42 42 H 0.97000 * 120.00170 * 179.97438 * 22 21 19 43 43 H 1.07998 * 120.12407 * 359.97438 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 3.4994 1.4445 0.1281 5 6 4.3397 1.3273 -1.0661 6 1 5.3856 1.2523 -0.7685 7 6 3.9413 0.0747 -1.8492 8 6 4.1505 2.5441 -1.9348 9 8 3.3919 3.4196 -1.5913 10 8 4.8248 2.6553 -3.0901 11 16 4.1990 1.5791 1.6230 12 8 3.2323 1.1264 2.5609 13 8 5.4976 1.0129 1.5107 14 6 4.4309 3.2972 1.9375 15 6 5.6138 3.9149 1.5607 16 6 5.8076 5.2670 1.7966 17 6 4.8298 6.0093 2.4190 18 6 3.6278 5.3920 2.8109 19 6 2.6161 6.1446 3.4505 20 1 1.8925 5.6500 4.0816 21 6 2.5524 7.5303 3.2659 22 7 3.1946 8.0881 2.2719 23 14 1.5503 8.5837 4.4388 24 1 0.9252 7.7179 5.4707 25 1 2.4394 9.5745 5.0969 26 1 0.4901 9.2962 3.6814 27 6 3.4397 4.0198 2.5611 28 1 -0.3634 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8900 31 1 1.8934 -0.5139 -0.8900 32 1 1.8932 -0.5139 0.8900 33 1 1.6008 1.9831 0.8385 34 1 1.7565 1.9280 -0.9338 35 1 4.6414 -0.0785 -2.6703 36 1 3.9635 -0.7905 -1.1865 37 1 2.9349 0.2006 -2.2485 38 1 4.6708 3.4540 -3.6131 39 1 6.3879 3.3392 1.0753 40 1 6.7311 5.7388 1.4952 41 1 4.9845 7.0618 2.6055 42 1 3.1502 9.0485 2.1438 43 1 2.5208 3.5358 2.8573 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573750412.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:21 Heat of formation + Delta-G solvation = -171.609315 kcal Electronic energy + Delta-G solvation = -29062.237639 eV Core-core repulsion = 25005.201862 eV Total energy + Delta-G solvation = -4057.035777 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.44664 -39.47522 -38.50522 -38.38117 -37.02976 -36.90264 -35.70826 -34.29552 -31.95759 -31.69944 -31.49919 -27.42402 -27.22709 -25.56616 -23.70331 -22.89528 -22.50765 -22.25250 -20.34229 -19.65319 -19.04729 -18.63484 -17.91380 -17.75849 -17.17764 -16.81431 -16.59641 -16.51710 -16.09539 -15.39880 -15.22313 -15.14423 -14.66213 -14.42276 -14.34887 -14.20910 -13.74556 -13.51946 -13.38797 -13.31421 -13.16072 -13.10090 -13.07354 -12.93413 -12.83753 -12.68329 -12.66358 -12.54533 -12.42039 -12.24418 -12.03725 -11.64479 -11.57181 -11.43035 -11.26204 -11.18841 -10.27728 -9.85418 -9.59757 -8.75068 -6.48838 -0.67081 0.37142 0.80369 1.20705 1.34511 1.41910 1.50424 1.72550 2.15025 2.16285 2.52028 2.66080 3.23765 3.44433 3.57501 3.93582 3.95122 4.12327 4.18628 4.24424 4.30618 4.35881 4.45844 4.72218 4.74068 4.78253 4.82531 4.86399 4.98556 5.01248 5.01585 5.15057 5.15808 5.25168 5.32999 5.37761 5.45859 5.50760 5.53237 5.64169 5.84099 5.90522 6.06743 6.49194 6.76447 6.81279 7.00165 8.22465 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012658 B = 0.004159 C = 0.003942 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2211.576063 B = 6730.408634 C = 7101.702228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.146 4.146 3 C 0.121 3.879 4 N -0.972 5.972 5 C 0.148 3.852 6 H 0.143 0.857 7 C -0.149 4.149 8 C 0.464 3.536 9 O -0.531 6.531 10 O -0.504 6.504 11 S 2.708 3.292 12 O -0.976 6.976 13 O -0.973 6.973 14 C -0.642 4.642 15 C -0.153 4.153 16 C -0.123 4.123 17 C -0.143 4.143 18 C 0.062 3.938 19 C -0.496 4.496 20 H 0.078 0.922 21 C 0.036 3.964 22 N -0.823 5.823 23 Si 0.986 3.014 24 H -0.259 1.259 25 H -0.260 1.260 26 H -0.264 1.264 27 C -0.142 4.142 28 H 0.074 0.926 29 H 0.044 0.956 30 H 0.063 0.937 31 H 0.098 0.902 32 H 0.059 0.941 33 H 0.063 0.937 34 H 0.088 0.912 35 H 0.105 0.895 36 H 0.090 0.910 37 H 0.078 0.922 38 H 0.426 0.574 39 H 0.130 0.870 40 H 0.126 0.874 41 H 0.116 0.884 42 H 0.292 0.708 43 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.249 -12.005 -11.334 16.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.185 4.185 3 C -0.004 4.004 4 N -0.809 5.809 5 C 0.040 3.960 6 H 0.161 0.839 7 C -0.207 4.207 8 C 0.305 3.695 9 O -0.420 6.420 10 O -0.317 6.317 11 S 2.802 3.198 12 O -0.967 6.967 13 O -0.964 6.964 14 C -0.730 4.730 15 C -0.173 4.173 16 C -0.142 4.142 17 C -0.162 4.162 18 C 0.059 3.941 19 C -0.525 4.525 20 H 0.097 0.903 21 C -0.180 4.180 22 N -0.449 5.449 23 Si 0.806 3.194 24 H -0.182 1.182 25 H -0.185 1.185 26 H -0.188 1.188 27 C -0.163 4.163 28 H 0.093 0.907 29 H 0.064 0.936 30 H 0.082 0.918 31 H 0.117 0.883 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.106 0.894 35 H 0.124 0.876 36 H 0.109 0.891 37 H 0.096 0.904 38 H 0.287 0.713 39 H 0.148 0.852 40 H 0.144 0.856 41 H 0.134 0.866 42 H 0.102 0.898 43 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.137 -12.576 -10.594 16.444 hybrid contribution -0.527 2.494 0.185 2.556 sum -0.664 -10.082 -10.410 14.507 Atomic orbital electron populations 1.21710 0.94216 1.02851 1.02001 1.22214 0.97229 0.95272 1.03809 1.21505 0.76602 0.98625 1.03639 1.57449 1.14961 1.87441 1.21012 1.20742 0.97955 0.92580 0.84734 0.83943 1.22257 1.03986 0.93630 1.00836 1.24200 0.76710 0.88110 0.80522 1.90821 1.36860 1.42068 1.72238 1.84449 1.64913 1.49537 1.32811 1.01340 0.72464 0.73534 0.72455 1.93509 1.62222 1.80457 1.60473 1.93487 1.39729 1.76918 1.86252 1.30360 1.02949 1.25223 1.14492 1.20412 0.96198 0.95263 1.05458 1.21134 0.98941 0.94262 0.99894 1.21679 0.93057 1.00099 1.01412 1.18069 0.93107 0.91936 0.91030 1.19890 1.12577 0.93197 1.26805 0.90342 1.26799 0.96153 0.99292 0.95724 1.69830 1.36077 1.13816 1.25174 0.85098 0.78248 0.77669 0.78366 1.18203 1.18487 1.18818 1.20802 0.97396 0.95367 1.02717 0.90705 0.93634 0.91772 0.88345 0.92209 0.91843 0.89395 0.87595 0.89095 0.90359 0.71258 0.85239 0.85601 0.86621 0.89751 0.87481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.86 9.91 71.98 0.71 -2.14 16 2 C -0.15 -3.16 5.82 30.59 0.18 -2.99 16 3 C 0.12 3.42 4.36 86.38 0.38 3.80 16 4 N -0.97 -29.30 2.45 -497.29 -1.22 -30.51 16 5 C 0.15 3.53 3.18 44.25 0.14 3.67 16 6 H 0.14 3.26 6.84 -2.39 -0.02 3.25 16 7 C -0.15 -2.19 7.66 71.98 0.55 -1.64 16 8 C 0.46 12.19 7.39 71.24 0.53 12.72 16 9 O -0.53 -19.03 15.65 21.96 0.34 -18.68 16 10 O -0.50 -9.28 13.35 -51.40 -0.69 -9.97 16 11 S 2.71 103.15 5.64 -56.49 -0.32 102.83 16 12 O -0.98 -41.00 16.17 -128.00 -2.07 -43.07 16 13 O -0.97 -37.06 15.78 -128.00 -2.02 -39.08 16 14 C -0.64 -29.71 5.97 22.22 0.13 -29.58 16 15 C -0.15 -6.86 9.53 22.46 0.21 -6.65 16 16 C -0.12 -5.80 10.02 22.22 0.22 -5.58 16 17 C -0.14 -7.63 8.70 22.73 0.20 -7.43 16 18 C 0.06 3.46 5.59 -21.29 -0.12 3.34 16 19 C -0.50 -27.32 9.06 23.46 0.21 -27.11 16 20 H 0.08 4.20 7.90 -2.91 -0.02 4.18 16 21 C 0.04 1.80 5.17 85.26 0.44 2.24 16 22 N -0.82 -42.92 10.85 21.83 0.24 -42.69 16 23 Si 0.99 38.29 29.59 68.60 2.03 40.32 16 24 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 25 H -0.26 -9.60 7.11 99.48 0.71 -8.89 16 26 H -0.26 -9.75 7.11 99.48 0.71 -9.04 16 27 C -0.14 -7.38 9.26 22.73 0.21 -7.17 16 28 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 29 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 30 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 31 H 0.10 1.55 5.22 -2.38 -0.01 1.54 16 32 H 0.06 1.45 8.05 -2.38 -0.02 1.43 16 33 H 0.06 2.10 7.66 -2.38 -0.02 2.08 16 34 H 0.09 2.39 6.67 -2.39 -0.02 2.37 16 35 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 36 H 0.09 1.19 7.76 -2.38 -0.02 1.18 16 37 H 0.08 1.03 6.65 -2.39 -0.02 1.02 16 38 H 0.43 4.93 9.10 -74.06 -0.67 4.26 16 39 H 0.13 5.00 7.59 -2.91 -0.02 4.98 16 40 H 0.13 5.03 8.06 -2.91 -0.02 5.01 16 41 H 0.12 6.31 6.07 -2.91 -0.02 6.29 16 42 H 0.29 13.58 8.30 -92.71 -0.77 12.81 16 43 H 0.11 5.43 7.60 -2.91 -0.02 5.41 16 Total: -1.00 -73.16 368.48 0.67 -72.48 By element: Atomic # 1 Polarization: 32.50 SS G_CDS: 0.37 Total: 32.88 kcal Atomic # 6 Polarization: -68.51 SS G_CDS: 4.00 Total: -64.51 kcal Atomic # 7 Polarization: -72.22 SS G_CDS: -0.98 Total: -73.20 kcal Atomic # 8 Polarization: -106.36 SS G_CDS: -4.43 Total: -110.80 kcal Atomic # 14 Polarization: 38.29 SS G_CDS: 2.03 Total: 40.32 kcal Atomic # 16 Polarization: 103.15 SS G_CDS: -0.32 Total: 102.83 kcal Total: -73.16 0.67 -72.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573750412.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -99.128 kcal (2) G-P(sol) polarization free energy of solvation -73.155 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.283 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -171.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds