Wall clock time and date at job start Sat Apr 11 2020 06:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47620 * 2 1 4 4 H 1.09000 * 109.46844 * 54.99908 * 3 2 1 5 5 C 1.53006 * 109.46918 * 295.00304 * 3 2 1 6 6 C 1.52991 * 109.47478 * 174.99953 * 3 2 1 7 7 H 1.09000 * 109.47383 * 304.99913 * 6 3 2 8 8 N 1.46504 * 109.47350 * 184.99850 * 6 3 2 9 9 S 1.65604 * 119.99915 * 141.27700 * 8 6 3 10 10 O 1.42097 * 106.40059 * 312.82601 * 9 8 6 11 11 O 1.42102 * 106.39706 * 179.90725 * 9 8 6 12 12 C 1.76195 * 107.21819 * 66.36605 * 9 8 6 13 13 C 1.37641 * 120.13007 * 244.99649 * 12 9 8 14 14 C 1.38610 * 120.24802 * 180.31717 * 13 12 9 15 15 C 1.38657 * 120.50256 * 359.68006 * 14 13 12 16 16 C 1.37594 * 120.24644 * 359.97438 * 15 14 13 17 17 C 1.40701 * 120.12784 * 64.69211 * 12 9 8 18 18 C 1.41393 * 120.24292 * 359.97438 * 17 12 9 19 19 H 1.08001 * 120.00046 * 28.60324 * 18 17 12 20 20 C 1.39949 * 120.00016 * 208.60531 * 18 17 12 21 21 N 1.30821 * 119.99950 * 191.87513 * 20 18 17 22 22 Si 1.86796 * 119.99812 * 11.87881 * 20 18 17 23 23 H 1.48499 * 109.47000 * 266.48267 * 22 20 18 24 24 H 1.48496 * 109.47367 * 26.48470 * 22 20 18 25 25 H 1.48504 * 109.47018 * 146.48759 * 22 20 18 26 26 C 1.50705 * 109.47085 * 65.00487 * 6 3 2 27 27 O 1.20818 * 120.00200 * 120.00057 * 26 6 3 28 28 O 1.34233 * 119.99441 * 299.99566 * 26 6 3 29 29 H 1.08995 * 109.47206 * 59.99747 * 1 2 3 30 30 H 1.08997 * 109.47269 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46765 * 300.00165 * 1 2 3 32 32 H 1.09004 * 109.47072 * 240.00217 * 2 1 3 33 33 H 1.09004 * 109.47398 * 120.00074 * 2 1 3 34 34 H 1.08997 * 109.46800 * 179.97438 * 5 3 2 35 35 H 1.09000 * 109.47040 * 299.99484 * 5 3 2 36 36 H 1.08997 * 109.47069 * 59.99511 * 5 3 2 37 37 H 0.97005 * 119.99935 * 321.28454 * 8 6 3 38 38 H 1.08007 * 119.87301 * 0.02562 * 13 12 9 39 39 H 1.08000 * 119.74658 * 179.69260 * 14 13 12 40 40 H 1.07998 * 119.87387 * 180.02562 * 15 14 13 41 41 H 1.08005 * 120.12848 * 180.02562 * 16 15 14 42 42 H 0.97005 * 120.00149 * 179.97438 * 21 20 18 43 43 H 0.96703 * 116.99885 * 180.02562 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1266 -1.3074 6 6 3.5648 1.4443 0.1257 7 1 3.8571 0.8800 1.0113 8 7 4.0434 2.8237 0.2458 9 16 5.2938 3.1801 1.2713 10 8 4.9984 2.5361 2.5031 11 8 5.5181 4.5788 1.1597 12 6 6.7341 2.3926 0.6310 13 6 7.3448 1.3851 1.3427 14 6 8.4818 0.7684 0.8444 15 6 9.0130 1.1530 -0.3773 16 6 8.4150 2.1530 -1.1091 17 6 7.2606 2.7868 -0.6128 18 6 6.6377 3.8157 -1.3560 19 1 6.0903 4.5946 -0.8460 20 6 6.7305 3.8249 -2.7523 21 7 6.3619 4.8843 -3.4255 22 14 7.3805 2.3242 -3.6550 23 1 8.8405 2.4755 -3.8796 24 1 7.1284 1.1086 -2.8401 25 1 6.6892 2.1954 -4.9630 26 6 4.1706 0.8073 -1.0984 27 8 4.9245 1.4406 -1.7986 28 8 3.8724 -0.4637 -1.4108 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.9983 3.1543 -1.3072 35 1 2.0699 1.5875 -2.1492 36 1 0.5490 2.1253 -1.3969 37 1 3.6277 3.5284 -0.2754 38 1 6.9393 1.0772 2.2952 39 1 8.9573 -0.0179 1.4119 40 1 9.8990 0.6653 -0.7561 41 1 8.8301 2.4508 -2.0607 42 1 6.4266 4.8908 -4.3933 43 1 4.2856 -0.8290 -2.2051 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001573943364.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:24 Heat of formation + Delta-G solvation = -149.168591 kcal Electronic energy + Delta-G solvation = -30280.093974 eV Core-core repulsion = 26224.031299 eV Total energy + Delta-G solvation = -4056.062674 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -40.16959 -37.80578 -37.07718 -36.35874 -35.74132 -34.99568 -33.77918 -33.46600 -30.65063 -30.08748 -29.49557 -27.25900 -25.31464 -23.97374 -22.11662 -21.73265 -21.13334 -19.76350 -18.88695 -17.70420 -17.51197 -17.26979 -16.67248 -16.32580 -15.54464 -15.42201 -15.27604 -14.56243 -14.35437 -14.16546 -13.98755 -13.69672 -13.53105 -13.32404 -12.94330 -12.72596 -12.19896 -12.17665 -11.94540 -11.84733 -11.70230 -11.51350 -11.34364 -11.29793 -11.21473 -11.10747 -10.87748 -10.74448 -10.66529 -10.57904 -10.47187 -10.35339 -10.19557 -9.85468 -9.37632 -9.36481 -8.95590 -8.17254 -7.73980 -7.09039 -4.76894 1.38348 2.13739 2.61315 2.71868 3.04609 3.15587 3.24406 3.31395 3.80842 3.93926 4.34927 4.63081 4.63407 4.84817 4.89251 5.15465 5.25544 5.34271 5.42784 5.45164 5.54977 5.63683 5.70328 5.85314 5.90200 5.93315 5.95035 6.03498 6.08177 6.15918 6.25507 6.36212 6.43386 6.47676 6.73109 6.91866 7.02136 7.15626 7.27415 7.42150 7.50609 7.62557 7.91531 8.23924 8.37226 8.39739 8.64294 9.88131 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011321 B = 0.006442 C = 0.005637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.641471 B = 4345.170882 C = 4966.277451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.128 4.128 3 C -0.089 4.089 4 H 0.093 0.907 5 C -0.154 4.154 6 C 0.177 3.823 7 H 0.123 0.877 8 N -1.091 6.091 9 S 2.701 3.299 10 O -0.994 6.994 11 O -0.963 6.963 12 C -0.776 4.776 13 C 0.016 3.984 14 C -0.265 4.265 15 C -0.045 4.045 16 C -0.231 4.231 17 C 0.178 3.822 18 C -0.425 4.425 19 H 0.121 0.879 20 C 0.099 3.901 21 N -0.786 5.786 22 Si 0.927 3.073 23 H -0.283 1.283 24 H -0.228 1.228 25 H -0.297 1.297 26 C 0.442 3.558 27 O -0.453 6.453 28 O -0.523 6.523 29 H 0.055 0.945 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.086 0.914 33 H 0.066 0.934 34 H 0.062 0.938 35 H 0.055 0.945 36 H 0.063 0.937 37 H 0.420 0.580 38 H 0.111 0.889 39 H 0.098 0.902 40 H 0.096 0.904 41 H 0.101 0.899 42 H 0.289 0.711 43 H 0.400 0.600 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.225 -9.588 1.153 13.355 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.166 4.166 3 C -0.109 4.109 4 H 0.111 0.889 5 C -0.212 4.212 6 C 0.066 3.934 7 H 0.141 0.859 8 N -0.846 5.846 9 S 2.799 3.201 10 O -0.984 6.984 11 O -0.954 6.954 12 C -0.872 4.872 13 C -0.004 4.004 14 C -0.285 4.285 15 C -0.064 4.064 16 C -0.251 4.251 17 C 0.172 3.828 18 C -0.452 4.452 19 H 0.139 0.861 20 C -0.124 4.124 21 N -0.407 5.407 22 Si 0.756 3.244 23 H -0.211 1.211 24 H -0.151 1.151 25 H -0.226 1.226 26 C 0.279 3.721 27 O -0.336 6.336 28 O -0.335 6.335 29 H 0.074 0.926 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.074 0.926 36 H 0.082 0.918 37 H 0.255 0.745 38 H 0.129 0.871 39 H 0.116 0.884 40 H 0.114 0.886 41 H 0.119 0.881 42 H 0.099 0.901 43 H 0.258 0.742 Dipole moment (debyes) X Y Z Total from point charges -9.292 -8.604 1.963 12.815 hybrid contribution 1.100 -0.887 -2.001 2.450 sum -8.193 -9.491 -0.038 12.538 Atomic orbital electron populations 1.21799 0.95868 1.01406 1.01743 1.21735 0.95655 0.95190 1.03982 1.21407 0.91412 0.98054 1.00075 0.88916 1.21957 1.01679 1.01104 0.96438 1.20174 0.95012 0.83390 0.94794 0.85917 1.55517 1.52991 1.12837 1.63238 1.01116 0.73171 0.73669 0.72133 1.93461 1.84974 1.77917 1.42093 1.93541 1.85076 1.30420 1.86314 1.29615 1.24658 1.20328 1.12550 1.20348 0.93281 0.90925 0.95866 1.20403 1.02023 1.06811 0.99269 1.20763 0.96854 0.94512 0.94295 1.21134 0.99597 1.03032 1.01298 1.16908 0.88780 0.88238 0.88843 1.20220 1.26376 1.06715 0.91862 0.86122 1.26184 0.91305 0.96844 0.98096 1.69661 1.33181 1.27932 1.09940 0.86148 0.76763 0.84280 0.77226 1.21063 1.15115 1.22553 1.24167 0.79974 0.79902 0.88078 1.90886 1.30889 1.62398 1.49388 1.84557 1.69498 1.30207 1.49226 0.92636 0.92873 0.92875 0.89566 0.91492 0.91898 0.92588 0.91764 0.74457 0.87141 0.88386 0.88611 0.88137 0.90081 0.74232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 9.67 37.15 0.36 -0.91 16 2 C -0.13 -1.28 4.88 -26.73 -0.13 -1.41 16 3 C -0.09 -1.03 2.36 -90.62 -0.21 -1.25 16 4 H 0.09 0.99 8.14 -51.93 -0.42 0.57 16 5 C -0.15 -1.78 8.50 37.16 0.32 -1.47 16 6 C 0.18 2.63 2.65 -69.08 -0.18 2.45 16 7 H 0.12 1.76 7.45 -51.93 -0.39 1.37 16 8 N -1.09 -19.04 4.80 -5.88 -0.03 -19.07 16 9 S 2.70 57.26 5.05 -107.50 -0.54 56.72 16 10 O -0.99 -21.13 16.26 -57.17 -0.93 -22.06 16 11 O -0.96 -23.49 15.71 -57.17 -0.90 -24.39 16 12 C -0.78 -17.88 5.81 -38.87 -0.23 -18.10 16 13 C 0.02 0.34 9.53 -39.66 -0.38 -0.04 16 14 C -0.26 -5.47 10.05 -39.29 -0.39 -5.86 16 15 C -0.05 -0.97 10.02 -39.66 -0.40 -1.37 16 16 C -0.23 -5.52 6.92 -38.88 -0.27 -5.79 16 17 C 0.18 4.42 4.09 -106.83 -0.44 3.98 16 18 C -0.43 -11.09 7.80 -37.74 -0.29 -11.38 16 19 H 0.12 3.35 5.63 -52.49 -0.30 3.05 16 20 C 0.10 2.51 5.32 -17.34 -0.09 2.42 16 21 N -0.79 -20.18 13.93 55.55 0.77 -19.41 16 22 Si 0.93 21.01 22.43 -169.99 -3.81 17.20 16 23 H -0.28 -6.30 6.71 56.52 0.38 -5.93 16 24 H -0.23 -5.21 5.87 56.52 0.33 -4.87 16 25 H -0.30 -6.58 7.11 56.52 0.40 -6.18 16 26 C 0.44 7.05 6.17 36.01 0.22 7.27 16 27 O -0.45 -9.00 11.96 -18.74 -0.22 -9.22 16 28 O -0.52 -6.44 10.65 -39.26 -0.42 -6.86 16 29 H 0.05 0.45 6.56 -51.93 -0.34 0.11 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 31 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.09 0.89 5.77 -51.93 -0.30 0.59 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.06 0.78 6.74 -51.93 -0.35 0.43 16 35 H 0.06 0.69 7.07 -51.93 -0.37 0.33 16 36 H 0.06 0.62 6.56 -51.93 -0.34 0.27 16 37 H 0.42 6.96 7.36 -34.48 -0.25 6.70 16 38 H 0.11 2.15 7.33 -52.48 -0.38 1.76 16 39 H 0.10 1.74 8.06 -52.49 -0.42 1.32 16 40 H 0.10 1.76 8.06 -52.49 -0.42 1.33 16 41 H 0.10 2.39 4.09 -52.48 -0.21 2.17 16 42 H 0.29 6.73 8.30 -40.82 -0.34 6.39 16 43 H 0.40 3.73 9.10 45.56 0.41 4.15 16 LS Contribution 344.91 15.07 5.20 5.20 Total: -1.00 -31.98 344.91 -7.58 -39.57 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -4.58 Total: 13.80 kcal Atomic # 6 Polarization: -29.35 SS G_CDS: -2.12 Total: -31.47 kcal Atomic # 7 Polarization: -39.22 SS G_CDS: 0.75 Total: -38.48 kcal Atomic # 8 Polarization: -60.06 SS G_CDS: -2.47 Total: -62.53 kcal Atomic # 14 Polarization: 21.01 SS G_CDS: -3.81 Total: 17.20 kcal Atomic # 16 Polarization: 57.26 SS G_CDS: -0.54 Total: 56.72 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -31.98 -7.58 -39.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573943364.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.603 kcal (2) G-P(sol) polarization free energy of solvation -31.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.584 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.565 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds