Wall clock time and date at job start Sat Apr 11 2020 06:15:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53003 * 109.47620 * 2 1 4 4 H 1.09000 * 109.46844 * 54.99908 * 3 2 1 5 5 C 1.53006 * 109.46918 * 295.00304 * 3 2 1 6 6 C 1.52991 * 109.47478 * 174.99953 * 3 2 1 7 7 H 1.09000 * 109.47383 * 304.99913 * 6 3 2 8 8 N 1.46504 * 109.47350 * 184.99850 * 6 3 2 9 9 S 1.65604 * 119.99915 * 141.27700 * 8 6 3 10 10 O 1.42097 * 106.40059 * 312.82601 * 9 8 6 11 11 O 1.42102 * 106.39706 * 179.90725 * 9 8 6 12 12 C 1.76195 * 107.21819 * 66.36605 * 9 8 6 13 13 C 1.37641 * 120.13007 * 244.99649 * 12 9 8 14 14 C 1.38610 * 120.24802 * 180.31717 * 13 12 9 15 15 C 1.38657 * 120.50256 * 359.68006 * 14 13 12 16 16 C 1.37594 * 120.24644 * 359.97438 * 15 14 13 17 17 C 1.40701 * 120.12784 * 64.69211 * 12 9 8 18 18 C 1.41393 * 120.24292 * 359.97438 * 17 12 9 19 19 H 1.08001 * 120.00046 * 28.60324 * 18 17 12 20 20 C 1.39949 * 120.00016 * 208.60531 * 18 17 12 21 21 N 1.30821 * 119.99950 * 191.87513 * 20 18 17 22 22 Si 1.86796 * 119.99812 * 11.87881 * 20 18 17 23 23 H 1.48499 * 109.47000 * 266.48267 * 22 20 18 24 24 H 1.48496 * 109.47367 * 26.48470 * 22 20 18 25 25 H 1.48504 * 109.47018 * 146.48759 * 22 20 18 26 26 C 1.50705 * 109.47085 * 65.00487 * 6 3 2 27 27 O 1.20818 * 120.00200 * 120.00057 * 26 6 3 28 28 O 1.34233 * 119.99441 * 299.99566 * 26 6 3 29 29 H 1.08995 * 109.47206 * 59.99747 * 1 2 3 30 30 H 1.08997 * 109.47269 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46765 * 300.00165 * 1 2 3 32 32 H 1.09004 * 109.47072 * 240.00217 * 2 1 3 33 33 H 1.09004 * 109.47398 * 120.00074 * 2 1 3 34 34 H 1.08997 * 109.46800 * 179.97438 * 5 3 2 35 35 H 1.09000 * 109.47040 * 299.99484 * 5 3 2 36 36 H 1.08997 * 109.47069 * 59.99511 * 5 3 2 37 37 H 0.97005 * 119.99935 * 321.28454 * 8 6 3 38 38 H 1.08007 * 119.87301 * 0.02562 * 13 12 9 39 39 H 1.08000 * 119.74658 * 179.69260 * 14 13 12 40 40 H 1.07998 * 119.87387 * 180.02562 * 15 14 13 41 41 H 1.08005 * 120.12848 * 180.02562 * 16 15 14 42 42 H 0.97005 * 120.00149 * 179.97438 * 21 20 18 43 43 H 0.96703 * 116.99885 * 180.02562 * 28 26 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1266 -1.3074 6 6 3.5648 1.4443 0.1257 7 1 3.8571 0.8800 1.0113 8 7 4.0434 2.8237 0.2458 9 16 5.2938 3.1801 1.2713 10 8 4.9984 2.5361 2.5031 11 8 5.5181 4.5788 1.1597 12 6 6.7341 2.3926 0.6310 13 6 7.3448 1.3851 1.3427 14 6 8.4818 0.7684 0.8444 15 6 9.0130 1.1530 -0.3773 16 6 8.4150 2.1530 -1.1091 17 6 7.2606 2.7868 -0.6128 18 6 6.6377 3.8157 -1.3560 19 1 6.0903 4.5946 -0.8460 20 6 6.7305 3.8249 -2.7523 21 7 6.3619 4.8843 -3.4255 22 14 7.3805 2.3242 -3.6550 23 1 8.8405 2.4755 -3.8796 24 1 7.1284 1.1086 -2.8401 25 1 6.6892 2.1954 -4.9630 26 6 4.1706 0.8073 -1.0984 27 8 4.9245 1.4406 -1.7986 28 8 3.8724 -0.4637 -1.4108 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8900 32 1 1.8933 -0.5138 -0.8900 33 1 1.8933 -0.5139 0.8900 34 1 1.9983 3.1543 -1.3072 35 1 2.0699 1.5875 -2.1492 36 1 0.5490 2.1253 -1.3969 37 1 3.6277 3.5284 -0.2754 38 1 6.9393 1.0772 2.2952 39 1 8.9573 -0.0179 1.4119 40 1 9.8990 0.6653 -0.7561 41 1 8.8301 2.4508 -2.0607 42 1 6.4266 4.8908 -4.3933 43 1 4.2856 -0.8290 -2.2051 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001573943364.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:24 Heat of formation + Delta-G solvation = -173.391057 kcal Electronic energy + Delta-G solvation = -30281.144339 eV Core-core repulsion = 26224.031299 eV Total energy + Delta-G solvation = -4057.113039 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.37146 -39.56362 -38.28047 -37.98415 -36.92950 -36.77286 -35.59001 -34.64976 -32.44163 -31.82364 -30.41835 -28.38920 -27.13178 -24.90256 -23.80828 -22.92416 -22.83076 -20.77229 -20.44511 -19.50900 -18.95145 -18.63368 -18.26074 -17.75855 -17.05323 -16.79752 -16.66328 -15.97638 -15.86879 -15.54914 -15.44041 -15.23842 -14.89589 -14.55050 -14.38883 -14.06064 -13.81418 -13.57079 -13.28881 -13.14005 -13.09199 -12.95150 -12.85122 -12.73266 -12.66299 -12.55717 -12.38723 -12.25546 -12.10525 -11.90076 -11.66496 -11.55556 -11.47624 -11.27447 -11.14895 -11.01828 -10.43290 -9.90493 -9.52491 -8.94975 -6.66082 -0.27017 0.37689 0.84272 1.22875 1.36807 1.48905 1.51562 1.96301 2.13192 2.41381 2.57048 2.92609 3.39129 3.58122 3.73397 3.83434 3.99034 4.19313 4.25108 4.29658 4.34456 4.57315 4.62381 4.64528 4.68620 4.78609 4.82488 4.91351 4.98562 5.07803 5.19592 5.23810 5.25278 5.35204 5.41405 5.55981 5.57298 5.67642 5.71978 5.84151 5.85753 6.02743 6.12369 6.34008 6.57525 6.77379 7.23522 8.08000 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011321 B = 0.006442 C = 0.005637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2472.641471 B = 4345.170882 C = 4966.277451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.124 4.124 3 C -0.083 4.083 4 H 0.105 0.895 5 C -0.154 4.154 6 C 0.167 3.833 7 H 0.132 0.868 8 N -1.083 6.083 9 S 2.718 3.282 10 O -0.994 6.994 11 O -1.002 7.002 12 C -0.786 4.786 13 C 0.003 3.997 14 C -0.252 4.252 15 C -0.042 4.042 16 C -0.261 4.261 17 C 0.171 3.829 18 C -0.453 4.453 19 H 0.091 0.909 20 C 0.072 3.928 21 N -0.827 5.827 22 Si 0.972 3.028 23 H -0.280 1.280 24 H -0.229 1.229 25 H -0.294 1.294 26 C 0.447 3.553 27 O -0.496 6.496 28 O -0.507 6.507 29 H 0.057 0.943 30 H 0.062 0.938 31 H 0.057 0.943 32 H 0.082 0.918 33 H 0.071 0.929 34 H 0.047 0.953 35 H 0.044 0.956 36 H 0.086 0.914 37 H 0.423 0.577 38 H 0.133 0.867 39 H 0.137 0.863 40 H 0.132 0.868 41 H 0.097 0.903 42 H 0.295 0.705 43 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.499 -12.678 2.119 15.983 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.162 4.162 3 C -0.103 4.103 4 H 0.123 0.877 5 C -0.211 4.211 6 C 0.057 3.943 7 H 0.149 0.851 8 N -0.841 5.841 9 S 2.814 3.186 10 O -0.984 6.984 11 O -0.992 6.992 12 C -0.880 4.880 13 C -0.016 4.016 14 C -0.272 4.272 15 C -0.060 4.060 16 C -0.281 4.281 17 C 0.166 3.834 18 C -0.480 4.480 19 H 0.109 0.891 20 C -0.147 4.147 21 N -0.451 5.451 22 Si 0.799 3.201 23 H -0.207 1.207 24 H -0.152 1.152 25 H -0.222 1.222 26 C 0.285 3.715 27 O -0.382 6.382 28 O -0.320 6.320 29 H 0.076 0.924 30 H 0.081 0.919 31 H 0.076 0.924 32 H 0.101 0.899 33 H 0.090 0.910 34 H 0.066 0.934 35 H 0.063 0.937 36 H 0.105 0.895 37 H 0.259 0.741 38 H 0.150 0.850 39 H 0.155 0.845 40 H 0.149 0.851 41 H 0.114 0.886 42 H 0.105 0.895 43 H 0.276 0.724 Dipole moment (debyes) X Y Z Total from point charges -9.561 -11.727 2.935 15.413 hybrid contribution 1.174 -0.104 -2.114 2.420 sum -8.387 -11.831 0.821 14.525 Atomic orbital electron populations 1.21782 0.94442 1.02224 1.02124 1.21724 0.96824 0.93636 1.04057 1.21455 0.88838 0.99597 1.00429 0.87734 1.21961 1.03052 1.00017 0.96082 1.20569 0.97157 0.81731 0.94831 0.85062 1.55188 1.51605 1.14448 1.62846 1.00502 0.73184 0.72567 0.72315 1.93450 1.84996 1.77672 1.42324 1.93491 1.85823 1.32951 1.86978 1.29977 1.25696 1.20393 1.11928 1.20744 0.93705 0.90527 0.96650 1.20917 1.00948 1.06536 0.98833 1.21206 0.97440 0.93295 0.94062 1.21267 1.00058 1.04699 1.02064 1.17042 0.88986 0.87980 0.89381 1.20036 1.28174 1.07408 0.92401 0.89119 1.26680 0.91274 0.98405 0.98352 1.69686 1.35646 1.29247 1.10476 0.85459 0.76330 0.81992 0.76302 1.20711 1.15248 1.22200 1.24292 0.78977 0.80439 0.87758 1.90885 1.32897 1.63562 1.50861 1.84516 1.69050 1.28404 1.49988 0.92425 0.91879 0.92354 0.89909 0.90984 0.93372 0.93669 0.89508 0.74100 0.84954 0.84528 0.85055 0.88571 0.89472 0.72445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.67 71.98 0.70 -1.37 16 2 C -0.12 -2.16 4.88 30.59 0.15 -2.01 16 3 C -0.08 -1.78 2.36 -10.79 -0.03 -1.81 16 4 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 5 C -0.15 -3.41 8.50 71.98 0.61 -2.79 16 6 C 0.17 4.78 2.65 44.24 0.12 4.90 16 7 H 0.13 3.52 7.45 -2.39 -0.02 3.50 16 8 N -1.08 -38.11 4.80 -172.52 -0.83 -38.94 16 9 S 2.72 115.79 5.05 -56.49 -0.29 115.50 16 10 O -0.99 -41.13 16.26 -128.00 -2.08 -43.21 16 11 O -1.00 -50.70 15.71 -128.00 -2.01 -52.71 16 12 C -0.79 -35.74 5.81 22.73 0.13 -35.61 16 13 C 0.00 0.14 9.53 22.22 0.21 0.35 16 14 C -0.25 -9.41 10.05 22.46 0.23 -9.18 16 15 C -0.04 -1.65 10.02 22.22 0.22 -1.43 16 16 C -0.26 -12.23 6.92 22.73 0.16 -12.07 16 17 C 0.17 8.55 4.09 -21.29 -0.09 8.46 16 18 C -0.45 -24.51 7.80 23.46 0.18 -24.33 16 19 H 0.09 5.36 5.63 -2.91 -0.02 5.34 16 20 C 0.07 3.76 5.32 85.26 0.45 4.22 16 21 N -0.83 -44.41 13.93 21.83 0.30 -44.10 16 22 Si 0.97 43.81 22.43 68.60 1.54 45.34 16 23 H -0.28 -12.20 6.71 99.48 0.67 -11.53 16 24 H -0.23 -10.26 5.87 99.48 0.58 -9.67 16 25 H -0.29 -12.79 7.11 99.48 0.71 -12.09 16 26 C 0.45 13.78 6.17 71.24 0.44 14.22 16 27 O -0.50 -19.69 11.96 21.99 0.26 -19.43 16 28 O -0.51 -11.43 10.65 -51.44 -0.55 -11.98 16 29 H 0.06 0.78 6.56 -2.39 -0.02 0.77 16 30 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 31 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.08 1.50 5.77 -2.38 -0.01 1.49 16 33 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 34 H 0.05 1.20 6.74 -2.39 -0.02 1.18 16 35 H 0.04 1.09 7.07 -2.39 -0.02 1.07 16 36 H 0.09 1.50 6.56 -2.39 -0.02 1.49 16 37 H 0.42 14.58 7.36 -96.74 -0.71 13.87 16 38 H 0.13 4.71 7.33 -2.91 -0.02 4.68 16 39 H 0.14 4.06 8.06 -2.91 -0.02 4.04 16 40 H 0.13 4.22 8.06 -2.91 -0.02 4.20 16 41 H 0.10 4.52 4.09 -2.91 -0.01 4.51 16 42 H 0.29 14.34 8.30 -92.70 -0.77 13.57 16 43 H 0.42 6.86 9.10 -74.06 -0.67 6.19 16 Total: -1.00 -70.10 344.91 -0.63 -70.73 By element: Atomic # 1 Polarization: 37.74 SS G_CDS: -0.47 Total: 37.27 kcal Atomic # 6 Polarization: -61.95 SS G_CDS: 3.49 Total: -58.46 kcal Atomic # 7 Polarization: -82.52 SS G_CDS: -0.52 Total: -83.04 kcal Atomic # 8 Polarization: -122.96 SS G_CDS: -4.38 Total: -127.34 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.54 Total: 45.34 kcal Atomic # 16 Polarization: 115.79 SS G_CDS: -0.29 Total: 115.50 kcal Total: -70.10 -0.63 -70.73 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001573943364.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -102.664 kcal (2) G-P(sol) polarization free energy of solvation -70.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -172.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -173.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds