Wall clock time and date at job start Sat Apr 11 2020 06:15:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47166 * 2 1 4 4 C 1.52999 * 109.47246 * 120.00245 * 2 1 3 5 5 H 1.09003 * 109.47068 * 60.00395 * 4 2 1 6 6 N 1.46506 * 109.46972 * 179.97438 * 4 2 1 7 7 S 1.65596 * 119.99651 * 215.00014 * 6 4 2 8 8 O 1.42102 * 106.40754 * 311.46052 * 7 6 4 9 9 O 1.42109 * 106.39910 * 178.54094 * 7 6 4 10 10 C 1.76199 * 107.22174 * 65.00135 * 7 6 4 11 11 C 1.38238 * 119.99900 * 89.99763 * 10 7 6 12 12 C 1.38235 * 120.00108 * 180.02562 * 11 10 7 13 13 C 1.38243 * 119.99617 * 0.02562 * 12 11 10 14 14 C 1.50706 * 119.99586 * 179.97438 * 13 12 11 15 15 C 1.50703 * 109.47001 * 89.99822 * 14 13 12 16 16 H 1.08005 * 119.99817 * 359.97438 * 15 14 13 17 17 C 1.37871 * 120.00081 * 179.97438 * 15 14 13 18 18 N 1.31520 * 119.99848 * 0.02562 * 17 15 14 19 19 Si 1.86798 * 120.00321 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46938 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.47198 * 120.00527 * 19 17 15 22 22 H 1.48498 * 109.47360 * 240.00281 * 19 17 15 23 23 C 1.38233 * 120.00248 * 0.25361 * 13 12 11 24 24 C 1.38234 * 120.00018 * 269.97659 * 10 7 6 25 25 C 1.50695 * 109.47368 * 300.00076 * 4 2 1 26 26 O 1.20825 * 120.00068 * 240.00181 * 25 4 2 27 27 O 1.34232 * 119.99901 * 59.99594 * 25 4 2 28 28 H 1.08994 * 109.46952 * 299.99139 * 1 2 3 29 29 H 1.08999 * 109.47504 * 60.00079 * 1 2 3 30 30 H 1.09007 * 109.47116 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47016 * 240.00203 * 2 1 3 32 32 H 1.08997 * 109.47329 * 300.00518 * 3 2 1 33 33 H 1.09002 * 109.46987 * 60.00186 * 3 2 1 34 34 H 1.09000 * 109.47654 * 179.97438 * 3 2 1 35 35 H 0.96996 * 120.00109 * 35.00181 * 6 4 2 36 36 H 1.08000 * 120.00578 * 359.97438 * 11 10 7 37 37 H 1.07999 * 120.00165 * 179.97438 * 12 11 10 38 38 H 1.09000 * 109.46646 * 209.99280 * 14 13 12 39 39 H 1.09000 * 109.47248 * 329.99998 * 14 13 12 40 40 H 0.96998 * 119.99944 * 179.97438 * 18 17 15 41 41 H 1.08004 * 119.99934 * 179.72684 * 23 13 12 42 42 H 1.07999 * 120.00024 * 0.02562 * 24 10 7 43 43 H 0.96701 * 116.99886 * 179.97438 * 27 25 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6768 -1.7490 1.2491 6 7 3.5051 -0.7218 1.2488 7 16 4.3327 -2.0218 1.8549 8 8 3.7519 -2.3137 3.1185 9 8 5.7136 -1.7344 1.6819 10 6 3.9768 -3.3981 0.8139 11 6 4.7768 -3.6606 -0.2825 12 6 4.4973 -4.7401 -1.0995 13 6 3.4175 -5.5568 -0.8204 14 6 3.1124 -6.7333 -1.7114 15 6 3.8425 -7.9502 -1.2042 16 1 4.4654 -7.8787 -0.3248 17 6 3.7152 -9.1548 -1.8627 18 7 2.9571 -9.2418 -2.9339 19 14 4.6207 -10.6630 -1.2344 20 1 5.4013 -10.3030 -0.0235 21 1 3.6388 -11.7233 -0.8928 22 1 5.5415 -11.1619 -2.2872 23 6 2.6141 -5.2910 0.2727 24 6 2.8979 -4.2157 1.0938 25 6 1.5377 -0.0110 2.4797 26 8 2.3229 0.4481 3.2750 27 8 0.2180 0.1116 2.6921 28 1 -0.3633 0.5137 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8900 32 1 1.6766 1.9563 -0.8899 33 1 1.6767 1.9563 0.8900 34 1 3.1300 1.4425 0.0005 35 1 3.9903 0.0393 0.8936 36 1 5.6197 -3.0218 -0.5014 37 1 5.1221 -4.9449 -1.9564 38 1 2.0394 -6.9248 -1.7057 39 1 3.4368 -6.5127 -2.7284 40 1 2.8678 -10.0891 -3.3974 41 1 1.7678 -5.9265 0.4882 42 1 2.2729 -4.0107 1.9504 43 1 -0.0561 0.5749 3.4954 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001588953748.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:40 Heat of formation + Delta-G solvation = -153.580056 kcal Electronic energy + Delta-G solvation = -27999.973815 eV Core-core repulsion = 23943.719845 eV Total energy + Delta-G solvation = -4056.253970 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.84584 -38.88273 -37.42474 -37.11057 -36.39522 -35.80742 -33.72911 -33.22961 -31.61299 -30.65463 -27.96480 -27.47956 -27.08439 -23.77967 -22.95486 -22.42682 -20.97734 -20.51247 -19.64816 -18.29146 -18.04733 -17.82690 -16.78248 -16.46971 -16.22966 -16.11119 -15.33722 -15.11076 -14.56513 -14.43019 -14.41675 -14.01952 -13.86465 -13.58660 -13.19644 -13.07097 -12.89002 -12.48885 -12.28101 -12.25629 -12.05565 -11.97578 -11.82110 -11.75098 -11.55335 -11.53225 -11.35121 -11.08822 -11.07705 -10.96724 -10.91524 -10.54776 -10.53922 -10.00923 -9.75619 -9.65755 -8.66304 -8.57345 -8.45342 -6.20328 -4.25400 0.35454 1.24207 1.71946 1.95905 2.59441 2.97215 3.21419 3.29716 3.34891 3.70568 4.02631 4.15011 4.32826 4.34104 4.35741 4.61726 4.76331 4.86486 5.10573 5.13668 5.15392 5.17461 5.24807 5.35769 5.53958 5.56224 5.65979 5.68929 5.74444 5.84634 5.86647 6.11123 6.17347 6.23921 6.25604 6.42954 6.60036 6.77161 6.85006 7.24100 7.37184 7.53923 7.64349 7.74976 8.09483 8.79693 9.39986 10.89691 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017552 B = 0.002904 C = 0.002740 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.837990 B = 9639.528322 C =10215.046667 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.096 4.096 3 C -0.155 4.155 4 C 0.171 3.829 5 H 0.126 0.874 6 N -1.099 6.099 7 S 2.694 3.306 8 O -0.955 6.955 9 O -0.958 6.958 10 C -0.706 4.706 11 C -0.019 4.019 12 C -0.144 4.144 13 C 0.029 3.971 14 C 0.039 3.961 15 C -0.518 4.518 16 H 0.060 0.940 17 C 0.061 3.939 18 N -0.891 5.891 19 Si 0.898 3.102 20 H -0.271 1.271 21 H -0.282 1.282 22 H -0.282 1.282 23 C -0.143 4.143 24 C -0.029 4.029 25 C 0.466 3.534 26 O -0.496 6.496 27 O -0.509 6.509 28 H 0.081 0.919 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.100 0.900 32 H 0.068 0.932 33 H 0.054 0.946 34 H 0.060 0.940 35 H 0.422 0.578 36 H 0.131 0.869 37 H 0.130 0.870 38 H 0.035 0.965 39 H 0.035 0.965 40 H 0.264 0.736 41 H 0.130 0.870 42 H 0.129 0.871 43 H 0.406 0.594 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.155 21.182 4.808 22.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.116 4.116 3 C -0.212 4.212 4 C 0.060 3.940 5 H 0.143 0.857 6 N -0.857 5.857 7 S 2.787 3.213 8 O -0.945 6.945 9 O -0.948 6.948 10 C -0.796 4.796 11 C -0.039 4.039 12 C -0.163 4.163 13 C 0.028 3.972 14 C 0.002 3.998 15 C -0.556 4.556 16 H 0.078 0.922 17 C -0.141 4.141 18 N -0.529 5.529 19 Si 0.726 3.274 20 H -0.196 1.196 21 H -0.208 1.208 22 H -0.208 1.208 23 C -0.162 4.162 24 C -0.048 4.048 25 C 0.305 3.695 26 O -0.382 6.382 27 O -0.321 6.321 28 H 0.100 0.900 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.118 0.882 32 H 0.087 0.913 33 H 0.073 0.927 34 H 0.079 0.921 35 H 0.258 0.742 36 H 0.149 0.851 37 H 0.148 0.852 38 H 0.054 0.946 39 H 0.053 0.947 40 H 0.073 0.927 41 H 0.148 0.852 42 H 0.147 0.853 43 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -5.410 20.855 5.380 22.207 hybrid contribution 0.260 -0.765 0.118 0.817 sum -5.150 20.090 5.498 21.456 Atomic orbital electron populations 1.22093 0.92924 1.03394 1.03444 1.21398 0.97638 0.96688 0.95899 1.21931 1.01398 0.95274 1.02601 1.20348 0.80638 1.01694 0.91294 0.85680 1.55623 1.13032 1.35992 1.81020 1.01816 0.72940 0.72786 0.73781 1.93585 1.78515 1.84293 1.38080 1.93579 1.30326 1.84316 1.86593 1.30291 1.09682 1.22556 1.17053 1.20780 0.95641 0.96343 0.91140 1.21268 0.98662 0.95412 1.00957 1.21147 0.90064 0.92878 0.93074 1.18557 0.98331 0.89123 0.93804 1.21006 1.29042 0.92876 1.12660 0.92217 1.25001 0.95261 0.99052 0.94812 1.69954 1.38338 1.26123 1.18512 0.86426 0.79609 0.82405 0.78998 1.19559 1.20783 1.20784 1.21253 1.01482 0.97741 0.95722 1.20791 0.93558 0.93499 0.96960 1.23933 0.80329 0.77588 0.87668 1.90732 1.56865 1.44809 1.45768 1.84630 1.25902 1.73612 1.47919 0.90001 0.91899 0.91768 0.88195 0.91283 0.92673 0.92125 0.74190 0.85127 0.85221 0.94640 0.94650 0.92659 0.85205 0.85325 0.73489 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.00 8.67 37.16 0.32 -0.68 16 2 C -0.10 -0.66 2.93 -90.62 -0.27 -0.93 16 3 C -0.15 -0.97 8.76 37.15 0.33 -0.64 16 4 C 0.17 1.58 2.54 -69.08 -0.18 1.40 16 5 H 0.13 1.07 7.23 -51.93 -0.38 0.70 16 6 N -1.10 -11.40 4.92 -5.88 -0.03 -11.43 16 7 S 2.69 38.04 5.65 -107.50 -0.61 37.44 16 8 O -0.95 -16.07 17.04 -57.17 -0.97 -17.05 16 9 O -0.96 -15.68 17.28 -57.17 -0.99 -16.66 16 10 C -0.71 -10.61 5.82 -39.58 -0.23 -10.84 16 11 C -0.02 -0.30 9.52 -39.58 -0.38 -0.68 16 12 C -0.14 -2.55 9.70 -39.58 -0.38 -2.94 16 13 C 0.03 0.57 5.07 -104.62 -0.53 0.04 16 14 C 0.04 0.91 5.11 -29.03 -0.15 0.77 16 15 C -0.52 -13.78 9.09 -34.44 -0.31 -14.09 16 16 H 0.06 1.60 7.74 -52.48 -0.41 1.19 16 17 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 18 N -0.89 -25.10 13.29 55.43 0.74 -24.36 16 19 Si 0.90 20.87 29.54 -169.99 -5.02 15.85 16 20 H -0.27 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 22 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 23 C -0.14 -2.51 9.70 -39.58 -0.38 -2.89 16 24 C -0.03 -0.44 8.90 -39.58 -0.35 -0.79 16 25 C 0.47 4.80 6.37 36.00 0.23 5.03 16 26 O -0.50 -6.81 17.19 -18.75 -0.32 -7.13 16 27 O -0.51 -3.56 10.34 -39.26 -0.41 -3.97 16 28 H 0.08 0.51 5.32 -51.93 -0.28 0.23 16 29 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 30 H 0.06 0.41 8.14 -51.92 -0.42 -0.01 16 31 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.38 7.22 -51.93 -0.37 0.00 16 34 H 0.06 0.36 6.51 -51.93 -0.34 0.02 16 35 H 0.42 3.51 7.03 -34.47 -0.24 3.26 16 36 H 0.13 1.74 7.62 -52.49 -0.40 1.34 16 37 H 0.13 2.18 8.06 -52.49 -0.42 1.76 16 38 H 0.04 0.87 8.08 -51.93 -0.42 0.45 16 39 H 0.04 0.87 8.09 -51.93 -0.42 0.45 16 40 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 41 H 0.13 2.15 8.06 -52.48 -0.42 1.73 16 42 H 0.13 1.67 7.62 -52.49 -0.40 1.27 16 43 H 0.41 1.34 9.10 45.56 0.41 1.75 16 LS Contribution 372.77 15.07 5.62 5.62 Total: -1.00 -35.24 372.77 -9.28 -44.52 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -4.91 Total: 2.86 kcal Atomic # 6 Polarization: -23.30 SS G_CDS: -2.38 Total: -25.68 kcal Atomic # 7 Polarization: -36.50 SS G_CDS: 0.71 Total: -35.79 kcal Atomic # 8 Polarization: -42.12 SS G_CDS: -2.69 Total: -44.81 kcal Atomic # 14 Polarization: 20.87 SS G_CDS: -5.02 Total: 15.85 kcal Atomic # 16 Polarization: 38.04 SS G_CDS: -0.61 Total: 37.44 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -35.24 -9.28 -44.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001588953748.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.057 kcal (2) G-P(sol) polarization free energy of solvation -35.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.523 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds