Wall clock time and date at job start Sat Apr 11 2020 06:15:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47619 * 2 1 4 4 C 1.50704 * 109.47125 * 239.99334 * 2 1 3 5 5 O 1.20820 * 120.00480 * 240.00226 * 4 2 1 6 6 O 1.34237 * 119.99428 * 60.00837 * 4 2 1 7 7 C 1.50704 * 109.47133 * 120.00080 * 2 1 3 8 8 C 1.38234 * 120.00277 * 180.02562 * 7 2 1 9 9 C 1.38230 * 119.99885 * 180.02562 * 8 7 2 10 10 C 1.38235 * 120.00326 * 359.97438 * 9 8 7 11 11 S 1.76199 * 120.00342 * 179.70391 * 10 9 8 12 12 O 1.42099 * 106.40466 * 203.54194 * 11 10 9 13 13 O 1.42098 * 106.40181 * 336.46004 * 11 10 9 14 14 N 1.65602 * 107.21888 * 89.99875 * 11 10 9 15 15 C 1.46500 * 119.99756 * 65.00258 * 14 11 10 16 16 C 1.52998 * 109.46901 * 164.99878 * 15 14 11 17 17 C 1.50692 * 109.47350 * 179.97438 * 16 15 14 18 18 H 1.08006 * 120.00253 * 0.02562 * 17 16 15 19 19 C 1.37881 * 120.00405 * 180.02562 * 17 16 15 20 20 N 1.31506 * 119.99836 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00222 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47067 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47172 * 119.99695 * 21 19 17 24 24 H 1.48498 * 109.47053 * 240.00038 * 21 19 17 25 25 C 1.38234 * 119.99814 * 359.97438 * 10 9 8 26 26 C 1.38235 * 119.99518 * 0.02562 * 7 2 1 27 27 H 1.09001 * 109.47229 * 300.00885 * 1 2 3 28 28 H 1.09007 * 109.46988 * 60.00153 * 1 2 3 29 29 H 1.08997 * 109.47601 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47416 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.46939 * 299.99714 * 3 2 1 32 32 H 1.08993 * 109.47194 * 59.99856 * 3 2 1 33 33 H 0.96705 * 116.99269 * 180.02562 * 6 4 2 34 34 H 1.07992 * 119.99701 * 359.97438 * 8 7 2 35 35 H 1.08000 * 120.00356 * 179.97438 * 9 8 7 36 36 H 0.97000 * 119.99945 * 245.00458 * 14 11 10 37 37 H 1.09000 * 109.47104 * 284.99861 * 15 14 11 38 38 H 1.08996 * 109.47400 * 45.00315 * 15 14 11 39 39 H 1.09000 * 109.47228 * 299.99907 * 16 15 14 40 40 H 1.09003 * 109.47349 * 59.99837 * 16 15 14 41 41 H 0.97000 * 120.00202 * 179.97438 * 20 19 17 42 42 H 1.08001 * 120.00299 * 179.97438 * 25 10 9 43 43 H 1.07997 * 120.00423 * 359.97438 * 26 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7106 -1.2304 5 8 2.7269 -1.6929 -1.1195 6 8 1.7081 -0.2519 -2.4496 7 6 2.0323 -0.7104 1.2305 8 6 3.3914 -0.8363 1.4496 9 6 3.8521 -1.4884 2.5779 10 6 2.9538 -2.0142 3.4876 11 16 3.5410 -2.8523 4.9220 12 8 2.4944 -3.7194 5.3368 13 8 4.8508 -3.3079 4.6124 14 7 3.7104 -1.7186 6.1172 15 6 2.5312 -1.0257 6.6420 16 6 2.8914 -0.3299 7.9561 17 6 1.6786 0.3834 8.4957 18 1 0.7441 0.3440 7.9557 19 6 1.7619 1.0864 9.6790 20 7 2.8995 1.1340 10.3368 21 14 0.2583 1.9700 10.3482 22 1 -0.8883 1.7627 9.4275 23 1 -0.0786 1.4276 11.6889 24 1 0.5465 3.4224 10.4599 25 6 1.5947 -1.8875 3.2691 26 6 1.1339 -1.2362 2.1401 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6768 1.9563 0.8899 33 1 2.0536 -0.7412 -3.2088 34 1 4.0931 -0.4259 0.7387 35 1 4.9138 -1.5872 2.7490 36 1 4.5905 -1.5134 6.4697 37 1 2.1938 -0.2836 5.9184 38 1 1.7346 -1.7480 6.8200 39 1 3.2288 -1.0720 8.6797 40 1 3.6881 0.3925 7.7783 41 1 2.9582 1.6288 11.1691 42 1 0.8928 -2.2986 3.9795 43 1 0.0722 -1.1375 1.9692 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001589644068.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:47 Heat of formation + Delta-G solvation = -152.788220 kcal Electronic energy + Delta-G solvation = -27445.587078 eV Core-core repulsion = 23389.367445 eV Total energy + Delta-G solvation = -4056.219633 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.29167 -39.36000 -37.00301 -36.53683 -35.93378 -35.59275 -35.38383 -32.75357 -31.36928 -30.36891 -29.14175 -27.93402 -25.13119 -24.50270 -23.55877 -22.70807 -21.15475 -20.37585 -19.30996 -18.29005 -18.02831 -17.29373 -16.94635 -16.32861 -16.17578 -15.75960 -15.61659 -15.05454 -14.85925 -14.53014 -14.24006 -14.00958 -13.86175 -13.77501 -13.38754 -13.21040 -12.93177 -12.61315 -12.53900 -12.50096 -12.04449 -11.91546 -11.88074 -11.80456 -11.73424 -11.68900 -11.29520 -11.19957 -11.14374 -10.81843 -10.70402 -10.61541 -10.44949 -9.60937 -9.39330 -9.26280 -9.11921 -8.92574 -8.42957 -6.09722 -4.13125 0.50024 0.77797 1.20969 1.77767 2.52552 3.22248 3.26756 3.34733 3.38088 3.51392 3.87835 3.99789 4.21560 4.39250 4.39613 4.47576 4.72627 4.77019 4.86549 5.10719 5.13239 5.22934 5.23805 5.27272 5.31285 5.38242 5.54618 5.64110 5.67877 5.76271 5.79950 5.98761 6.00209 6.05258 6.18000 6.19458 6.46426 6.68125 6.70928 7.40702 7.45925 7.54923 7.64059 7.89028 8.26533 8.92973 9.51571 11.01775 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012301 B = 0.002977 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.635380 B = 9403.932214 C =10954.736196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.016 4.016 3 C -0.141 4.141 4 C 0.486 3.514 5 O -0.500 6.500 6 O -0.513 6.513 7 C -0.029 4.029 8 C -0.112 4.112 9 C -0.018 4.018 10 C -0.666 4.666 11 S 2.692 3.308 12 O -0.959 6.959 13 O -0.970 6.970 14 N -1.110 6.110 15 C 0.118 3.882 16 C 0.017 3.983 17 C -0.523 4.523 18 H 0.060 0.940 19 C 0.059 3.941 20 N -0.892 5.892 21 Si 0.895 3.105 22 H -0.272 1.272 23 H -0.283 1.283 24 H -0.284 1.284 25 C -0.017 4.017 26 C -0.132 4.132 27 H 0.082 0.918 28 H 0.076 0.924 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.076 0.924 32 H 0.080 0.920 33 H 0.411 0.589 34 H 0.126 0.874 35 H 0.141 0.859 36 H 0.417 0.583 37 H 0.052 0.948 38 H 0.069 0.931 39 H 0.026 0.974 40 H 0.024 0.976 41 H 0.262 0.738 42 H 0.145 0.855 43 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.584 -0.254 -24.494 24.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.017 4.017 3 C -0.198 4.198 4 C 0.327 3.673 5 O -0.387 6.387 6 O -0.325 6.325 7 C -0.029 4.029 8 C -0.131 4.131 9 C -0.037 4.037 10 C -0.752 4.752 11 S 2.781 3.219 12 O -0.949 6.949 13 O -0.960 6.960 14 N -0.872 5.872 15 C -0.007 4.007 16 C -0.021 4.021 17 C -0.562 4.562 18 H 0.078 0.922 19 C -0.143 4.143 20 N -0.531 5.531 21 Si 0.723 3.277 22 H -0.196 1.196 23 H -0.209 1.209 24 H -0.210 1.210 25 C -0.036 4.036 26 C -0.151 4.151 27 H 0.101 0.899 28 H 0.095 0.905 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.095 0.905 32 H 0.099 0.901 33 H 0.270 0.730 34 H 0.144 0.856 35 H 0.159 0.841 36 H 0.252 0.748 37 H 0.070 0.930 38 H 0.087 0.913 39 H 0.045 0.955 40 H 0.042 0.958 41 H 0.071 0.929 42 H 0.163 0.837 43 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -2.487 -1.172 -23.990 24.147 hybrid contribution -0.306 0.906 -0.398 1.036 sum -2.793 -0.266 -24.388 24.549 Atomic orbital electron populations 1.22011 0.90642 1.03480 1.04308 1.19428 0.98385 0.96428 0.87433 1.21931 1.01942 0.91690 1.04252 1.23204 0.77080 0.82404 0.84578 1.90780 1.35172 1.25634 1.87089 1.84509 1.72345 1.58955 1.16656 1.19549 0.94030 0.95688 0.93655 1.20965 0.94785 0.99801 0.97535 1.20859 0.99484 0.91501 0.91855 1.31159 1.02607 1.19274 1.22135 1.01880 0.73361 0.73582 0.73110 1.93575 1.58353 1.62092 1.80880 1.93557 1.38287 1.79454 1.84731 1.55488 1.17223 1.61339 1.53134 1.21662 0.84936 0.95300 0.98771 1.19289 0.97661 0.95469 0.89715 1.21119 0.96475 1.31655 1.06977 0.92200 1.25005 0.96093 0.96457 0.96763 1.69963 1.24849 1.41957 1.16342 0.86483 0.82926 0.79301 0.78971 1.19612 1.20930 1.21011 1.20974 0.93621 0.92692 0.96329 1.21224 1.00062 0.99086 0.94685 0.89916 0.90517 0.91403 0.91593 0.90494 0.90105 0.73022 0.85601 0.84119 0.74796 0.92952 0.91293 0.95536 0.95774 0.92869 0.83745 0.84439 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 7.06 37.16 0.26 -0.67 16 2 C -0.02 -0.13 0.80 -156.81 -0.12 -0.25 16 3 C -0.14 -0.94 8.22 37.16 0.31 -0.63 16 4 C 0.49 4.42 6.79 36.01 0.24 4.66 16 5 O -0.50 -6.30 15.87 -18.74 -0.30 -6.60 16 6 O -0.51 -3.10 13.23 -39.28 -0.52 -3.62 16 7 C -0.03 -0.32 4.38 -104.62 -0.46 -0.77 16 8 C -0.11 -1.34 7.94 -39.59 -0.31 -1.65 16 9 C -0.02 -0.24 9.52 -39.59 -0.38 -0.61 16 10 C -0.67 -9.53 5.95 -39.58 -0.24 -9.77 16 11 S 2.69 43.28 5.74 -107.50 -0.62 42.66 16 12 O -0.96 -17.84 16.75 -57.17 -0.96 -18.80 16 13 O -0.97 -17.08 17.28 -57.17 -0.99 -18.07 16 14 N -1.11 -18.38 6.00 -10.62 -0.06 -18.44 16 15 C 0.12 2.27 6.16 -4.04 -0.02 2.25 16 16 C 0.02 0.42 5.11 -27.89 -0.14 0.28 16 17 C -0.52 -14.00 9.11 -34.44 -0.31 -14.32 16 18 H 0.06 1.53 7.74 -52.48 -0.41 1.13 16 19 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -25.83 13.29 55.43 0.74 -25.09 16 21 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 22 H -0.27 -6.13 7.11 56.52 0.40 -5.73 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 C -0.02 -0.22 9.52 -39.58 -0.38 -0.60 16 26 C -0.13 -1.48 8.98 -39.58 -0.36 -1.83 16 27 H 0.08 0.46 7.51 -51.93 -0.39 0.07 16 28 H 0.08 0.39 8.11 -51.92 -0.42 -0.03 16 29 H 0.07 0.43 7.51 -51.93 -0.39 0.04 16 30 H 0.07 0.44 7.39 -51.93 -0.38 0.06 16 31 H 0.08 0.41 8.11 -51.93 -0.42 -0.01 16 32 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.41 0.89 9.10 45.56 0.41 1.31 16 34 H 0.13 1.30 7.52 -52.49 -0.39 0.90 16 35 H 0.14 1.67 7.62 -52.49 -0.40 1.27 16 36 H 0.42 6.39 8.65 -34.47 -0.30 6.09 16 37 H 0.05 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.07 1.33 7.75 -51.93 -0.40 0.93 16 39 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 42 H 0.14 1.78 7.62 -52.49 -0.40 1.38 16 43 H 0.14 1.15 5.90 -52.49 -0.31 0.84 16 LS Contribution 375.42 15.07 5.66 5.66 Total: -1.00 -36.01 375.42 -9.11 -45.12 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: -5.03 Total: 3.78 kcal Atomic # 6 Polarization: -20.40 SS G_CDS: -2.01 Total: -22.40 kcal Atomic # 7 Polarization: -44.21 SS G_CDS: 0.67 Total: -43.53 kcal Atomic # 8 Polarization: -44.33 SS G_CDS: -2.76 Total: -47.09 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 16 Polarization: 43.28 SS G_CDS: -0.62 Total: 42.66 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -36.01 -9.11 -45.12 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589644068.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.669 kcal (2) G-P(sol) polarization free energy of solvation -36.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -143.682 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.106 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.788 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds