Wall clock time and date at job start Sat Apr 11 2020 06:15:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52997 * 109.47619 * 2 1 4 4 C 1.50704 * 109.47125 * 239.99334 * 2 1 3 5 5 O 1.20820 * 120.00480 * 240.00226 * 4 2 1 6 6 O 1.34237 * 119.99428 * 60.00837 * 4 2 1 7 7 C 1.50704 * 109.47133 * 120.00080 * 2 1 3 8 8 C 1.38234 * 120.00277 * 180.02562 * 7 2 1 9 9 C 1.38230 * 119.99885 * 180.02562 * 8 7 2 10 10 C 1.38235 * 120.00326 * 359.97438 * 9 8 7 11 11 S 1.76199 * 120.00342 * 179.70391 * 10 9 8 12 12 O 1.42099 * 106.40466 * 203.54194 * 11 10 9 13 13 O 1.42098 * 106.40181 * 336.46004 * 11 10 9 14 14 N 1.65602 * 107.21888 * 89.99875 * 11 10 9 15 15 C 1.46500 * 119.99756 * 65.00258 * 14 11 10 16 16 C 1.52998 * 109.46901 * 164.99878 * 15 14 11 17 17 C 1.50692 * 109.47350 * 179.97438 * 16 15 14 18 18 H 1.08006 * 120.00253 * 0.02562 * 17 16 15 19 19 C 1.37881 * 120.00405 * 180.02562 * 17 16 15 20 20 N 1.31506 * 119.99836 * 359.97438 * 19 17 16 21 21 Si 1.86800 * 120.00222 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47067 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47172 * 119.99695 * 21 19 17 24 24 H 1.48498 * 109.47053 * 240.00038 * 21 19 17 25 25 C 1.38234 * 119.99814 * 359.97438 * 10 9 8 26 26 C 1.38235 * 119.99518 * 0.02562 * 7 2 1 27 27 H 1.09001 * 109.47229 * 300.00885 * 1 2 3 28 28 H 1.09007 * 109.46988 * 60.00153 * 1 2 3 29 29 H 1.08997 * 109.47601 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47416 * 180.02562 * 3 2 1 31 31 H 1.08999 * 109.46939 * 299.99714 * 3 2 1 32 32 H 1.08993 * 109.47194 * 59.99856 * 3 2 1 33 33 H 0.96705 * 116.99269 * 180.02562 * 6 4 2 34 34 H 1.07992 * 119.99701 * 359.97438 * 8 7 2 35 35 H 1.08000 * 120.00356 * 179.97438 * 9 8 7 36 36 H 0.97000 * 119.99945 * 245.00458 * 14 11 10 37 37 H 1.09000 * 109.47104 * 284.99861 * 15 14 11 38 38 H 1.08996 * 109.47400 * 45.00315 * 15 14 11 39 39 H 1.09000 * 109.47228 * 299.99907 * 16 15 14 40 40 H 1.09003 * 109.47349 * 59.99837 * 16 15 14 41 41 H 0.97000 * 120.00202 * 179.97438 * 20 19 17 42 42 H 1.08001 * 120.00299 * 179.97438 * 25 10 9 43 43 H 1.07997 * 120.00423 * 359.97438 * 26 7 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0323 -0.7106 -1.2304 5 8 2.7269 -1.6929 -1.1195 6 8 1.7081 -0.2519 -2.4496 7 6 2.0323 -0.7104 1.2305 8 6 3.3914 -0.8363 1.4496 9 6 3.8521 -1.4884 2.5779 10 6 2.9538 -2.0142 3.4876 11 16 3.5410 -2.8523 4.9220 12 8 2.4944 -3.7194 5.3368 13 8 4.8508 -3.3079 4.6124 14 7 3.7104 -1.7186 6.1172 15 6 2.5312 -1.0257 6.6420 16 6 2.8914 -0.3299 7.9561 17 6 1.6786 0.3834 8.4957 18 1 0.7441 0.3440 7.9557 19 6 1.7619 1.0864 9.6790 20 7 2.8995 1.1340 10.3368 21 14 0.2583 1.9700 10.3482 22 1 -0.8883 1.7627 9.4275 23 1 -0.0786 1.4276 11.6889 24 1 0.5465 3.4224 10.4599 25 6 1.5947 -1.8875 3.2691 26 6 1.1339 -1.2362 2.1401 27 1 -0.3634 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 -0.0005 30 1 3.1301 1.4424 -0.0005 31 1 1.6768 1.9562 -0.8900 32 1 1.6768 1.9563 0.8899 33 1 2.0536 -0.7412 -3.2088 34 1 4.0931 -0.4259 0.7387 35 1 4.9138 -1.5872 2.7490 36 1 4.5905 -1.5134 6.4697 37 1 2.1938 -0.2836 5.9184 38 1 1.7346 -1.7480 6.8200 39 1 3.2288 -1.0720 8.6797 40 1 3.6881 0.3925 7.7783 41 1 2.9582 1.6288 11.1691 42 1 0.8928 -2.2986 3.9795 43 1 0.0722 -1.1375 1.9692 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001589644068.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:15:46 Heat of formation + Delta-G solvation = -179.085310 kcal Electronic energy + Delta-G solvation = -27446.727405 eV Core-core repulsion = 23389.367445 eV Total energy + Delta-G solvation = -4057.359961 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -42.00029 -40.18949 -38.39384 -37.17568 -37.04022 -36.97934 -36.61125 -34.71136 -32.28226 -31.24473 -30.98944 -28.44611 -26.40504 -25.77392 -24.42973 -23.62873 -22.93070 -21.14074 -20.52580 -19.26345 -18.90574 -18.61882 -18.17358 -17.78280 -17.19828 -16.78843 -16.48428 -16.37673 -16.10829 -15.74759 -15.46789 -15.43078 -14.81550 -14.64612 -14.41525 -14.15181 -14.05541 -13.66877 -13.39847 -13.29936 -13.24753 -13.22972 -13.17471 -12.98583 -12.97917 -12.64167 -12.58328 -12.43753 -12.39406 -12.34125 -11.95102 -11.79273 -11.48172 -11.41751 -11.26659 -10.61382 -10.35249 -10.27985 -10.06348 -8.18460 -6.28956 -0.67677 -0.31805 0.26728 1.11391 1.44909 1.46235 1.58695 1.84614 2.07978 2.45046 2.49149 2.75891 3.16920 3.17379 3.27335 3.59341 3.82471 3.89734 3.93876 4.19170 4.22679 4.25214 4.38290 4.56765 4.61594 4.70788 4.72819 4.78599 4.82341 4.85293 4.89329 4.97894 5.03287 5.07402 5.18980 5.23706 5.34468 5.52651 5.54097 5.65822 5.75978 5.83442 6.03443 6.24776 6.87252 6.92340 7.40433 8.93951 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.012301 B = 0.002977 C = 0.002555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.635380 B = 9403.932214 C =10954.736196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.017 4.017 3 C -0.140 4.140 4 C 0.493 3.507 5 O -0.543 6.543 6 O -0.501 6.501 7 C -0.027 4.027 8 C -0.119 4.119 9 C -0.032 4.032 10 C -0.676 4.676 11 S 2.710 3.290 12 O -0.987 6.987 13 O -0.988 6.988 14 N -1.110 6.110 15 C 0.133 3.867 16 C 0.019 3.981 17 C -0.540 4.540 18 H 0.070 0.930 19 C 0.001 3.999 20 N -0.932 5.932 21 Si 0.965 3.035 22 H -0.257 1.257 23 H -0.283 1.283 24 H -0.279 1.279 25 C -0.033 4.033 26 C -0.131 4.131 27 H 0.093 0.907 28 H 0.092 0.908 29 H 0.066 0.934 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.084 0.916 33 H 0.429 0.571 34 H 0.139 0.861 35 H 0.146 0.854 36 H 0.421 0.579 37 H 0.071 0.929 38 H 0.069 0.931 39 H -0.001 1.001 40 H 0.008 0.992 41 H 0.263 0.737 42 H 0.149 0.851 43 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.683 1.179 -26.606 27.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.018 4.018 3 C -0.197 4.197 4 C 0.336 3.664 5 O -0.433 6.433 6 O -0.315 6.315 7 C -0.027 4.027 8 C -0.138 4.138 9 C -0.052 4.052 10 C -0.765 4.765 11 S 2.802 3.198 12 O -0.977 6.977 13 O -0.978 6.978 14 N -0.871 5.871 15 C 0.007 3.993 16 C -0.019 4.019 17 C -0.579 4.579 18 H 0.089 0.911 19 C -0.197 4.197 20 N -0.572 5.572 21 Si 0.790 3.210 22 H -0.180 1.180 23 H -0.209 1.209 24 H -0.205 1.205 25 C -0.052 4.052 26 C -0.149 4.149 27 H 0.112 0.888 28 H 0.110 0.890 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.112 0.888 32 H 0.103 0.897 33 H 0.291 0.709 34 H 0.157 0.843 35 H 0.164 0.836 36 H 0.257 0.743 37 H 0.089 0.911 38 H 0.087 0.913 39 H 0.018 0.982 40 H 0.026 0.974 41 H 0.072 0.928 42 H 0.167 0.833 43 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -4.579 0.250 -26.105 26.504 hybrid contribution 0.364 0.478 0.093 0.608 sum -4.215 0.728 -26.012 26.361 Atomic orbital electron populations 1.22071 0.88863 1.03859 1.05690 1.19527 0.99762 0.96726 0.85830 1.21961 1.01780 0.90622 1.05316 1.23317 0.76063 0.81574 0.85495 1.90777 1.37207 1.27542 1.87740 1.84462 1.71812 1.58762 1.16457 1.19944 0.93664 0.94613 0.94488 1.21205 0.95854 0.99511 0.97201 1.21044 0.99788 0.91968 0.92359 1.30713 1.03508 1.20902 1.21409 1.01060 0.72478 0.73095 0.73138 1.93531 1.58983 1.63416 1.81780 1.93525 1.39343 1.79949 1.85013 1.55342 1.16782 1.61101 1.53924 1.21342 0.85580 0.95489 0.96868 1.19166 0.96603 0.94626 0.91553 1.21602 0.97545 1.31461 1.07259 0.91135 1.25943 0.99114 0.97416 0.97239 1.70094 1.27152 1.43101 1.16900 0.85391 0.79463 0.77929 0.78221 1.18041 1.20912 1.20527 1.21206 0.93185 0.93325 0.97478 1.21582 1.01749 0.97909 0.93680 0.88821 0.88958 0.91519 0.91967 0.88787 0.89704 0.70931 0.84303 0.83604 0.74306 0.91065 0.91311 0.98221 0.97355 0.92790 0.83295 0.81431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.35 7.06 71.98 0.51 -0.84 16 2 C -0.02 -0.24 0.80 -53.67 -0.04 -0.28 16 3 C -0.14 -1.45 8.22 71.98 0.59 -0.86 16 4 C 0.49 7.83 6.79 71.24 0.48 8.32 16 5 O -0.54 -12.98 15.87 21.98 0.35 -12.64 16 6 O -0.50 -4.58 13.23 -51.48 -0.68 -5.26 16 7 C -0.03 -0.53 4.38 -19.86 -0.09 -0.62 16 8 C -0.12 -2.71 7.94 22.27 0.18 -2.53 16 9 C -0.03 -0.84 9.52 22.27 0.21 -0.63 16 10 C -0.68 -19.13 5.95 22.27 0.13 -19.00 16 11 S 2.71 88.27 5.74 -56.49 -0.32 87.95 16 12 O -0.99 -37.18 16.75 -128.00 -2.14 -39.33 16 13 O -0.99 -35.40 17.28 -128.00 -2.21 -37.61 16 14 N -1.11 -37.35 6.00 -187.50 -1.12 -38.48 16 15 C 0.13 5.11 6.16 86.38 0.53 5.64 16 16 C 0.02 0.95 5.11 29.84 0.15 1.11 16 17 C -0.54 -28.90 9.11 25.60 0.23 -28.67 16 18 H 0.07 3.54 7.74 -2.91 -0.02 3.51 16 19 C 0.00 0.05 5.46 84.66 0.46 0.52 16 20 N -0.93 -54.86 13.29 21.45 0.28 -54.57 16 21 Si 0.97 42.39 29.54 68.60 2.03 44.41 16 22 H -0.26 -10.56 7.11 99.48 0.71 -9.85 16 23 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 24 H -0.28 -11.99 7.11 99.48 0.71 -11.28 16 25 C -0.03 -0.83 9.52 22.27 0.21 -0.61 16 26 C -0.13 -2.65 8.98 22.27 0.20 -2.45 16 27 H 0.09 0.67 7.51 -2.39 -0.02 0.65 16 28 H 0.09 0.58 8.11 -2.38 -0.02 0.56 16 29 H 0.07 0.64 7.51 -2.39 -0.02 0.62 16 30 H 0.06 0.69 7.39 -2.39 -0.02 0.68 16 31 H 0.09 0.67 8.11 -2.39 -0.02 0.65 16 32 H 0.08 0.83 8.14 -2.39 -0.02 0.81 16 33 H 0.43 0.71 9.10 -74.05 -0.67 0.04 16 34 H 0.14 2.71 7.52 -2.91 -0.02 2.68 16 35 H 0.15 3.50 7.62 -2.91 -0.02 3.48 16 36 H 0.42 13.32 8.65 -96.74 -0.84 12.49 16 37 H 0.07 2.47 8.14 -2.39 -0.02 2.45 16 38 H 0.07 2.65 7.75 -2.39 -0.02 2.63 16 39 H 0.00 -0.03 8.14 -2.39 -0.02 -0.05 16 40 H 0.01 0.42 8.14 -2.39 -0.02 0.40 16 41 H 0.26 14.58 8.31 -92.71 -0.77 13.81 16 42 H 0.15 3.54 7.62 -2.91 -0.02 3.51 16 43 H 0.17 2.26 5.90 -2.91 -0.02 2.25 16 Total: -1.00 -77.52 375.42 -0.51 -78.03 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -0.46 Total: 18.41 kcal Atomic # 6 Polarization: -44.68 SS G_CDS: 3.77 Total: -40.91 kcal Atomic # 7 Polarization: -92.21 SS G_CDS: -0.84 Total: -93.05 kcal Atomic # 8 Polarization: -90.15 SS G_CDS: -4.69 Total: -94.84 kcal Atomic # 14 Polarization: 42.39 SS G_CDS: 2.03 Total: 44.41 kcal Atomic # 16 Polarization: 88.27 SS G_CDS: -0.32 Total: 87.95 kcal Total: -77.52 -0.51 -78.03 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001589644068.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.054 kcal (2) G-P(sol) polarization free energy of solvation -77.517 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -178.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.514 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -179.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds