Wall clock time and date at job start Sat Apr 11 2020 06:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47194 * 2 1 4 4 C 1.50704 * 109.46963 * 240.00360 * 2 1 3 5 5 C 1.38261 * 119.99999 * 59.72817 * 4 2 1 6 6 C 1.38209 * 119.99885 * 179.79046 * 5 4 2 7 7 C 1.38260 * 119.99966 * 0.43618 * 6 5 4 8 8 C 1.38214 * 120.00034 * 359.81615 * 7 6 5 9 9 S 1.76191 * 120.00059 * 179.97438 * 8 7 6 10 10 O 1.42099 * 106.40305 * 23.51897 * 9 8 7 11 11 O 1.42102 * 106.40125 * 156.43606 * 9 8 7 12 12 N 1.65600 * 107.22081 * 269.97567 * 9 8 7 13 13 C 1.36936 * 119.99778 * 89.99984 * 12 9 8 14 14 H 1.07999 * 120.00213 * 317.77360 * 13 12 9 15 15 C 1.38812 * 120.00044 * 137.77262 * 13 12 9 16 16 N 1.31622 * 119.99688 * 157.80814 * 15 13 12 17 17 Si 1.86796 * 120.00178 * 337.81437 * 15 13 12 18 18 H 1.48503 * 109.47254 * 95.58630 * 17 15 13 19 19 H 1.48497 * 109.47263 * 215.58805 * 17 15 13 20 20 H 1.48500 * 109.46881 * 335.58877 * 17 15 13 21 21 C 1.46494 * 120.00338 * 270.00260 * 12 9 8 22 22 C 1.52999 * 109.47423 * 93.59136 * 21 12 9 23 23 C 1.50694 * 109.47175 * 182.06253 * 22 21 12 24 24 O 1.20825 * 120.00364 * 0.02562 * 23 22 21 25 25 O 1.34234 * 119.99643 * 180.02562 * 23 22 21 26 26 C 1.38211 * 119.99907 * 239.99558 * 4 2 1 27 27 H 1.08993 * 109.47117 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47357 * 59.99605 * 1 2 3 29 29 H 1.09005 * 109.46952 * 299.99699 * 1 2 3 30 30 H 1.08991 * 109.47559 * 120.00139 * 2 1 3 31 31 H 1.09005 * 109.46925 * 60.00284 * 3 2 1 32 32 H 1.09001 * 109.47270 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47291 * 300.00436 * 3 2 1 34 34 H 1.08004 * 119.99791 * 359.97438 * 5 4 2 35 35 H 1.08003 * 120.00001 * 180.27421 * 6 5 4 36 36 H 1.07993 * 119.99947 * 179.83894 * 7 6 5 37 37 H 0.97007 * 119.99861 * 180.02562 * 16 15 13 38 38 H 1.09001 * 109.47519 * 213.59791 * 21 12 9 39 39 H 1.09006 * 109.47011 * 333.59871 * 21 12 9 40 40 H 1.08996 * 109.47363 * 302.07098 * 22 21 12 41 41 H 1.09008 * 109.46391 * 62.06434 * 22 21 12 42 42 H 0.96703 * 116.99509 * 180.02562 * 25 23 22 43 43 H 1.08003 * 119.99761 * 359.97438 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6936 -0.2412 -2.4863 6 6 2.1578 -0.8901 -3.6148 7 6 2.9535 -2.0137 -3.4880 8 6 3.2877 -2.4858 -2.2327 9 16 4.3011 -3.9180 -2.0711 10 8 5.0420 -4.0237 -3.2791 11 8 4.9107 -3.8358 -0.7902 12 7 3.2918 -5.2301 -2.0252 13 6 2.9367 -5.8617 -3.1872 14 1 2.6832 -5.2810 -4.0618 15 6 2.9026 -7.2484 -3.2410 16 7 2.1729 -7.8538 -4.1539 17 14 3.8922 -8.2551 -2.0177 18 1 3.0228 -8.6439 -0.8783 19 1 4.4091 -9.4768 -2.6853 20 1 5.0316 -7.4450 -1.5169 21 6 2.7787 -5.7150 -0.7416 22 6 1.4159 -5.0776 -0.4634 23 6 0.9113 -5.5372 0.8801 24 8 1.5738 -6.2963 1.5470 25 8 -0.2744 -5.1032 1.3359 26 6 2.8269 -1.8340 -1.1038 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8901 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9564 0.8901 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9565 -0.8900 34 1 1.0687 0.6341 -2.5852 35 1 1.8969 -0.5210 -4.5957 36 1 3.3141 -2.5223 -4.3698 37 1 2.1488 -8.8228 -4.1912 38 1 2.6719 -6.7992 -0.7792 39 1 3.4746 -5.4458 0.0530 40 1 1.5158 -3.9923 -0.4623 41 1 0.7100 -5.3766 -1.2384 42 1 -0.5557 -5.4252 2.2033 43 1 3.0882 -2.2028 -0.1229 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001591994112.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:05 Heat of formation + Delta-G solvation = -141.156827 kcal Electronic energy + Delta-G solvation = -29028.767627 eV Core-core repulsion = 24973.052369 eV Total energy + Delta-G solvation = -4055.715258 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -40.00751 -39.47955 -36.54720 -36.27660 -35.72542 -35.43619 -34.89425 -32.26474 -31.07000 -30.38546 -29.76822 -27.28510 -25.13383 -23.76546 -23.45324 -22.69432 -20.90071 -20.46223 -18.44323 -17.97274 -17.47505 -16.99956 -16.65213 -16.21051 -15.75283 -15.67665 -15.62586 -15.06933 -14.64573 -14.25554 -13.77632 -13.71230 -13.61577 -13.33982 -13.26903 -12.81846 -12.67524 -12.58765 -12.23982 -12.13408 -12.07360 -11.88113 -11.50816 -11.32092 -11.29647 -11.24566 -11.17932 -11.05272 -10.94375 -10.77422 -10.74882 -10.35634 -10.19481 -10.15297 -9.95383 -9.21260 -8.90065 -8.67281 -8.18304 -6.47879 -4.12840 0.98113 1.32931 1.44241 2.45375 3.15467 3.23249 3.30036 3.38485 3.59493 4.08956 4.21935 4.48944 4.55143 4.69927 4.86378 4.99001 5.05901 5.08623 5.15108 5.26025 5.33928 5.41009 5.45010 5.45898 5.53939 5.66251 5.68597 5.73440 5.85257 5.89520 5.92851 6.08359 6.10435 6.12024 6.20071 6.36670 6.42182 6.45640 6.53900 6.68239 6.89216 7.01119 7.59894 8.09457 8.19959 9.00116 9.07913 10.60913 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011227 B = 0.005381 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.392775 B = 5201.801276 C = 6532.666855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.057 4.057 3 C -0.144 4.144 4 C -0.103 4.103 5 C -0.071 4.071 6 C -0.140 4.140 7 C -0.017 4.017 8 C -0.650 4.650 9 S 2.636 3.364 10 O -0.957 6.957 11 O -0.994 6.994 12 N -0.862 5.862 13 C -0.302 4.302 14 H 0.107 0.893 15 C 0.077 3.923 16 N -0.853 5.853 17 Si 0.862 3.138 18 H -0.268 1.268 19 H -0.284 1.284 20 H -0.260 1.260 21 C 0.123 3.877 22 C -0.132 4.132 23 C 0.482 3.518 24 O -0.517 6.517 25 O -0.520 6.520 26 C -0.028 4.028 27 H 0.060 0.940 28 H 0.055 0.945 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.123 0.877 35 H 0.128 0.872 36 H 0.141 0.859 37 H 0.276 0.724 38 H 0.082 0.918 39 H 0.086 0.914 40 H 0.098 0.902 41 H 0.123 0.877 42 H 0.403 0.597 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.427 13.842 7.024 16.800 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.076 4.076 3 C -0.201 4.201 4 C -0.104 4.104 5 C -0.089 4.089 6 C -0.159 4.159 7 C -0.036 4.036 8 C -0.735 4.735 9 S 2.734 3.266 10 O -0.947 6.947 11 O -0.984 6.984 12 N -0.693 5.693 13 C -0.437 4.437 14 H 0.125 0.875 15 C -0.133 4.133 16 N -0.489 5.489 17 Si 0.688 3.312 18 H -0.194 1.194 19 H -0.210 1.210 20 H -0.184 1.184 21 C -0.004 4.004 22 C -0.172 4.172 23 C 0.325 3.675 24 O -0.405 6.405 25 O -0.332 6.332 26 C -0.047 4.047 27 H 0.079 0.921 28 H 0.074 0.926 29 H 0.076 0.924 30 H 0.098 0.902 31 H 0.076 0.924 32 H 0.075 0.925 33 H 0.075 0.925 34 H 0.141 0.859 35 H 0.146 0.854 36 H 0.159 0.841 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.104 0.896 40 H 0.117 0.883 41 H 0.141 0.859 42 H 0.261 0.739 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -5.193 13.737 6.798 16.183 hybrid contribution -0.441 -0.492 0.964 1.169 sum -5.634 13.245 7.762 16.353 Atomic orbital electron populations 1.21868 0.94170 1.02422 1.01712 1.20134 0.96080 0.95971 0.95409 1.21868 1.01377 0.95128 1.01766 1.19900 0.99085 0.96475 0.94895 1.21150 0.97165 0.98459 0.92096 1.21247 0.99243 0.96646 0.98714 1.20986 0.92384 0.94000 0.96189 1.31315 1.20045 1.22943 0.99179 1.04711 0.74320 0.74350 0.73220 1.93479 1.68098 1.85793 1.47282 1.93442 1.74850 1.87230 1.42833 1.52908 1.60224 1.45728 1.10415 1.18638 1.44719 0.90438 0.89894 0.87536 1.25437 0.94833 0.96944 0.96134 1.69826 1.34392 1.10444 1.34257 0.87118 0.82413 0.80437 0.81207 1.19445 1.21033 1.18377 1.21347 0.92124 1.00497 0.86457 1.21982 1.01129 1.02947 0.91100 1.23733 0.77911 0.77338 0.88565 1.90711 1.57173 1.33958 1.58651 1.84585 1.38020 1.69912 1.40634 1.20794 0.93039 0.93407 0.97479 0.92088 0.92556 0.92433 0.90222 0.92379 0.92456 0.92545 0.85927 0.85428 0.84126 0.91387 0.89975 0.89573 0.88337 0.85879 0.73876 0.84891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 25. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.29 9.00 37.16 0.33 -0.96 16 2 C -0.06 -0.59 3.09 -91.77 -0.28 -0.87 16 3 C -0.14 -1.26 9.01 37.16 0.33 -0.93 16 4 C -0.10 -1.33 4.78 -104.62 -0.50 -1.83 16 5 C -0.07 -0.85 8.71 -39.58 -0.34 -1.20 16 6 C -0.14 -1.85 10.05 -39.58 -0.40 -2.25 16 7 C -0.02 -0.27 9.52 -39.58 -0.38 -0.65 16 8 C -0.65 -11.55 5.97 -39.58 -0.24 -11.79 16 9 S 2.64 57.14 5.65 -107.50 -0.61 56.54 16 10 O -0.96 -23.35 16.50 -57.17 -0.94 -24.29 16 11 O -0.99 -22.46 15.85 -57.17 -0.91 -23.36 16 12 N -0.86 -19.41 2.37 -59.91 -0.14 -19.55 16 13 C -0.30 -7.57 9.27 -15.06 -0.14 -7.71 16 14 H 0.11 2.77 8.06 -52.49 -0.42 2.34 16 15 C 0.08 2.02 5.30 -17.43 -0.09 1.93 16 16 N -0.85 -23.04 13.97 55.49 0.78 -22.26 16 17 Si 0.86 20.78 25.26 -169.99 -4.29 16.48 16 18 H -0.27 -6.26 6.71 56.52 0.38 -5.88 16 19 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.26 -6.37 7.11 56.52 0.40 -5.97 16 21 C 0.12 2.56 3.88 -4.05 -0.02 2.54 16 22 C -0.13 -2.24 6.12 -27.89 -0.17 -2.41 16 23 C 0.48 7.74 8.33 36.00 0.30 8.03 16 24 O -0.52 -9.80 16.73 -18.75 -0.31 -10.11 16 25 O -0.52 -6.36 13.42 -39.27 -0.53 -6.89 16 26 C -0.03 -0.44 7.88 -39.58 -0.31 -0.75 16 27 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 28 H 0.06 0.47 7.37 -51.93 -0.38 0.09 16 29 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.08 0.81 7.88 -51.93 -0.41 0.40 16 31 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 32 H 0.06 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.46 7.41 -51.93 -0.38 0.07 16 34 H 0.12 1.14 7.10 -52.48 -0.37 0.77 16 35 H 0.13 1.34 8.06 -52.48 -0.42 0.92 16 36 H 0.14 2.32 7.62 -52.49 -0.40 1.92 16 37 H 0.28 7.00 8.31 -40.82 -0.34 6.66 16 38 H 0.08 1.84 3.73 -51.93 -0.19 1.64 16 39 H 0.09 1.76 6.85 -51.93 -0.36 1.41 16 40 H 0.10 1.48 6.82 -51.93 -0.35 1.13 16 41 H 0.12 2.09 8.14 -51.92 -0.42 1.66 16 42 H 0.40 3.07 9.10 45.56 0.41 3.48 16 43 H 0.13 1.97 7.51 -52.48 -0.39 1.58 16 LS Contribution 368.11 15.07 5.55 5.55 Total: -1.00 -32.31 368.11 -8.26 -40.57 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -4.95 Total: 6.16 kcal Atomic # 6 Polarization: -16.93 SS G_CDS: -1.90 Total: -18.83 kcal Atomic # 7 Polarization: -42.45 SS G_CDS: 0.63 Total: -41.81 kcal Atomic # 8 Polarization: -61.97 SS G_CDS: -2.69 Total: -64.66 kcal Atomic # 14 Polarization: 20.78 SS G_CDS: -4.29 Total: 16.48 kcal Atomic # 16 Polarization: 57.14 SS G_CDS: -0.61 Total: 56.54 kcal Total LS contribution 5.55 Total: 5.55 kcal Total: -32.31 -8.26 -40.57 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591994112.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -100.583 kcal (2) G-P(sol) polarization free energy of solvation -32.313 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.574 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.157 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds