Wall clock time and date at job start Sat Apr 11 2020 06:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53006 * 109.47194 * 2 1 4 4 C 1.50704 * 109.46963 * 240.00360 * 2 1 3 5 5 C 1.38261 * 119.99999 * 59.72817 * 4 2 1 6 6 C 1.38209 * 119.99885 * 179.79046 * 5 4 2 7 7 C 1.38260 * 119.99966 * 0.43618 * 6 5 4 8 8 C 1.38214 * 120.00034 * 359.81615 * 7 6 5 9 9 S 1.76191 * 120.00059 * 179.97438 * 8 7 6 10 10 O 1.42099 * 106.40305 * 23.51897 * 9 8 7 11 11 O 1.42102 * 106.40125 * 156.43606 * 9 8 7 12 12 N 1.65600 * 107.22081 * 269.97567 * 9 8 7 13 13 C 1.36936 * 119.99778 * 89.99984 * 12 9 8 14 14 H 1.07999 * 120.00213 * 317.77360 * 13 12 9 15 15 C 1.38812 * 120.00044 * 137.77262 * 13 12 9 16 16 N 1.31622 * 119.99688 * 157.80814 * 15 13 12 17 17 Si 1.86796 * 120.00178 * 337.81437 * 15 13 12 18 18 H 1.48503 * 109.47254 * 95.58630 * 17 15 13 19 19 H 1.48497 * 109.47263 * 215.58805 * 17 15 13 20 20 H 1.48500 * 109.46881 * 335.58877 * 17 15 13 21 21 C 1.46494 * 120.00338 * 270.00260 * 12 9 8 22 22 C 1.52999 * 109.47423 * 93.59136 * 21 12 9 23 23 C 1.50694 * 109.47175 * 182.06253 * 22 21 12 24 24 O 1.20825 * 120.00364 * 0.02562 * 23 22 21 25 25 O 1.34234 * 119.99643 * 180.02562 * 23 22 21 26 26 C 1.38211 * 119.99907 * 239.99558 * 4 2 1 27 27 H 1.08993 * 109.47117 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47357 * 59.99605 * 1 2 3 29 29 H 1.09005 * 109.46952 * 299.99699 * 1 2 3 30 30 H 1.08991 * 109.47559 * 120.00139 * 2 1 3 31 31 H 1.09005 * 109.46925 * 60.00284 * 3 2 1 32 32 H 1.09001 * 109.47270 * 180.02562 * 3 2 1 33 33 H 1.09004 * 109.47291 * 300.00436 * 3 2 1 34 34 H 1.08004 * 119.99791 * 359.97438 * 5 4 2 35 35 H 1.08003 * 120.00001 * 180.27421 * 6 5 4 36 36 H 1.07993 * 119.99947 * 179.83894 * 7 6 5 37 37 H 0.97007 * 119.99861 * 180.02562 * 16 15 13 38 38 H 1.09001 * 109.47519 * 213.59791 * 21 12 9 39 39 H 1.09006 * 109.47011 * 333.59871 * 21 12 9 40 40 H 1.08996 * 109.47363 * 302.07098 * 22 21 12 41 41 H 1.09008 * 109.46391 * 62.06434 * 22 21 12 42 42 H 0.96703 * 116.99509 * 180.02562 * 25 23 22 43 43 H 1.08003 * 119.99761 * 359.97438 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0323 -0.7104 -1.2305 5 6 1.6936 -0.2412 -2.4863 6 6 2.1578 -0.8901 -3.6148 7 6 2.9535 -2.0137 -3.4880 8 6 3.2877 -2.4858 -2.2327 9 16 4.3011 -3.9180 -2.0711 10 8 5.0420 -4.0237 -3.2791 11 8 4.9107 -3.8358 -0.7902 12 7 3.2918 -5.2301 -2.0252 13 6 2.9367 -5.8617 -3.1872 14 1 2.6832 -5.2810 -4.0618 15 6 2.9026 -7.2484 -3.2410 16 7 2.1729 -7.8538 -4.1539 17 14 3.8922 -8.2551 -2.0177 18 1 3.0228 -8.6439 -0.8783 19 1 4.4091 -9.4768 -2.6853 20 1 5.0316 -7.4450 -1.5169 21 6 2.7787 -5.7150 -0.7416 22 6 1.4159 -5.0776 -0.4634 23 6 0.9113 -5.5372 0.8801 24 8 1.5738 -6.2963 1.5470 25 8 -0.2744 -5.1032 1.3359 26 6 2.8269 -1.8340 -1.1038 27 1 -0.3633 -1.0276 -0.0005 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3633 0.5138 0.8901 30 1 1.8934 -0.5138 0.8899 31 1 1.6767 1.9564 0.8901 32 1 3.1300 1.4426 -0.0005 33 1 1.6766 1.9565 -0.8900 34 1 1.0687 0.6341 -2.5852 35 1 1.8969 -0.5210 -4.5957 36 1 3.3141 -2.5223 -4.3698 37 1 2.1488 -8.8228 -4.1912 38 1 2.6719 -6.7992 -0.7792 39 1 3.4746 -5.4458 0.0530 40 1 1.5158 -3.9923 -0.4623 41 1 0.7100 -5.3766 -1.2384 42 1 -0.5557 -5.4252 2.2033 43 1 3.0882 -2.2028 -0.1229 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001591994112.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:03 Heat of formation + Delta-G solvation = -163.619500 kcal Electronic energy + Delta-G solvation = -29029.741682 eV Core-core repulsion = 24973.052369 eV Total energy + Delta-G solvation = -4056.689313 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -41.28737 -40.55696 -38.25322 -38.02496 -37.03788 -36.76256 -36.31643 -34.15746 -32.27279 -31.95835 -30.80661 -27.92173 -26.89302 -25.36120 -24.65394 -23.81201 -22.21008 -21.53825 -20.21408 -19.33610 -18.93590 -18.45365 -18.30742 -17.72590 -17.08814 -16.96593 -16.92291 -16.59804 -15.99452 -15.57949 -14.98579 -14.92021 -14.72255 -14.61825 -14.60096 -14.48364 -14.35791 -13.61273 -13.48941 -13.23801 -13.19781 -13.12891 -13.06619 -12.91663 -12.88718 -12.86332 -12.61670 -12.54606 -12.11386 -12.05689 -12.01259 -11.81242 -11.65101 -11.60165 -11.45109 -10.89466 -10.28109 -10.03210 -9.77777 -8.48656 -6.13700 -0.48340 -0.10554 0.32447 1.17410 1.22011 1.32183 1.40760 1.91748 2.21598 2.34550 2.62820 2.75507 3.01357 3.37932 3.72036 3.79747 3.85706 3.88717 4.01310 4.15907 4.28627 4.34860 4.35107 4.45474 4.50729 4.51434 4.68016 4.74868 4.85823 4.87462 4.96311 5.02432 5.04868 5.14407 5.18818 5.23327 5.28269 5.39241 5.45866 5.57349 5.58490 5.65867 5.92300 6.17920 6.99271 7.06327 7.08206 8.64526 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011227 B = 0.005381 C = 0.004285 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2493.392775 B = 5201.801276 C = 6532.666855 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.059 4.059 3 C -0.143 4.143 4 C -0.095 4.095 5 C -0.056 4.056 6 C -0.133 4.133 7 C -0.040 4.040 8 C -0.660 4.660 9 S 2.650 3.350 10 O -0.993 6.993 11 O -1.007 7.007 12 N -0.871 5.871 13 C -0.302 4.302 14 H 0.089 0.911 15 C 0.045 3.955 16 N -0.890 5.890 17 Si 0.892 3.108 18 H -0.258 1.258 19 H -0.280 1.280 20 H -0.272 1.272 21 C 0.114 3.886 22 C -0.127 4.127 23 C 0.495 3.505 24 O -0.550 6.550 25 O -0.504 6.504 26 C -0.042 4.042 27 H 0.050 0.950 28 H 0.066 0.934 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.074 0.926 32 H 0.046 0.954 33 H 0.067 0.933 34 H 0.164 0.836 35 H 0.160 0.840 36 H 0.127 0.873 37 H 0.278 0.722 38 H 0.065 0.935 39 H 0.085 0.915 40 H 0.119 0.881 41 H 0.123 0.877 42 H 0.428 0.572 43 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.515 17.098 8.377 20.857 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.077 4.077 3 C -0.200 4.200 4 C -0.096 4.096 5 C -0.074 4.074 6 C -0.151 4.151 7 C -0.060 4.060 8 C -0.751 4.751 9 S 2.752 3.248 10 O -0.983 6.983 11 O -0.997 6.997 12 N -0.701 5.701 13 C -0.435 4.435 14 H 0.107 0.893 15 C -0.162 4.162 16 N -0.528 5.528 17 Si 0.718 3.282 18 H -0.184 1.184 19 H -0.206 1.206 20 H -0.196 1.196 21 C -0.012 4.012 22 C -0.167 4.167 23 C 0.338 3.662 24 O -0.441 6.441 25 O -0.317 6.317 26 C -0.061 4.061 27 H 0.069 0.931 28 H 0.086 0.914 29 H 0.092 0.908 30 H 0.096 0.904 31 H 0.093 0.907 32 H 0.065 0.935 33 H 0.086 0.914 34 H 0.181 0.819 35 H 0.178 0.822 36 H 0.145 0.855 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.104 0.896 40 H 0.137 0.863 41 H 0.141 0.859 42 H 0.290 0.710 43 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.299 16.897 8.166 20.137 hybrid contribution 0.127 -1.199 0.630 1.361 sum -7.173 15.698 8.796 19.371 Atomic orbital electron populations 1.21866 0.92779 1.02200 1.03139 1.20229 0.97115 0.96561 0.93822 1.21872 1.00771 0.94124 1.03243 1.20272 0.97434 0.95180 0.96747 1.21639 0.95968 0.98787 0.91025 1.21600 0.97551 0.95036 1.00924 1.21072 0.93998 0.95760 0.95134 1.30526 1.21753 1.21805 1.00976 1.03302 0.74442 0.74855 0.72223 1.93439 1.69816 1.86774 1.48306 1.93426 1.75570 1.87755 1.42926 1.52903 1.61283 1.45675 1.10272 1.18455 1.44823 0.90276 0.89967 0.89301 1.25762 0.95537 0.97677 0.97241 1.69870 1.36076 1.10739 1.36144 0.86628 0.81385 0.79642 0.80501 1.18356 1.20623 1.19647 1.21372 0.94374 0.99868 0.85629 1.21783 0.98928 1.03836 0.92143 1.23307 0.78509 0.76580 0.87817 1.90712 1.58425 1.35484 1.59470 1.84502 1.35764 1.69132 1.42302 1.20933 0.93945 0.94601 0.96649 0.93132 0.91449 0.90800 0.90419 0.90732 0.93476 0.91350 0.81878 0.82231 0.85458 0.91170 0.91667 0.89632 0.86342 0.85887 0.71023 0.84763 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.00 71.98 0.65 -1.26 16 2 C -0.06 -0.97 3.09 -11.54 -0.04 -1.01 16 3 C -0.14 -1.89 9.01 71.98 0.65 -1.24 16 4 C -0.10 -2.14 4.78 -19.86 -0.09 -2.24 16 5 C -0.06 -1.11 8.71 22.27 0.19 -0.92 16 6 C -0.13 -3.09 10.05 22.27 0.22 -2.87 16 7 C -0.04 -1.29 9.52 22.27 0.21 -1.08 16 8 C -0.66 -23.28 5.97 22.27 0.13 -23.15 16 9 S 2.65 118.11 5.65 -56.49 -0.32 117.79 16 10 O -0.99 -50.55 16.50 -128.00 -2.11 -52.66 16 11 O -1.01 -46.36 15.85 -128.00 -2.03 -48.39 16 12 N -0.87 -40.36 2.37 -343.46 -0.81 -41.18 16 13 C -0.30 -15.78 9.27 84.03 0.78 -15.00 16 14 H 0.09 4.88 8.06 -2.91 -0.02 4.86 16 15 C 0.04 2.43 5.30 84.86 0.45 2.88 16 16 N -0.89 -49.72 13.97 21.65 0.30 -49.42 16 17 Si 0.89 43.77 25.26 68.60 1.73 45.51 16 18 H -0.26 -12.07 6.71 99.48 0.67 -11.41 16 19 H -0.28 -13.38 7.11 99.48 0.71 -12.68 16 20 H -0.27 -13.69 7.11 99.48 0.71 -12.99 16 21 C 0.11 4.83 3.88 86.38 0.34 5.17 16 22 C -0.13 -4.26 6.12 29.85 0.18 -4.08 16 23 C 0.49 15.16 8.33 71.23 0.59 15.76 16 24 O -0.55 -20.44 16.73 21.97 0.37 -20.07 16 25 O -0.50 -10.88 13.42 -51.45 -0.69 -11.57 16 26 C -0.04 -1.23 7.88 22.27 0.18 -1.06 16 27 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.07 0.76 7.37 -2.38 -0.02 0.74 16 29 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 30 H 0.08 1.33 7.88 -2.39 -0.02 1.31 16 31 H 0.07 0.77 8.14 -2.38 -0.02 0.75 16 32 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 33 H 0.07 0.75 7.41 -2.38 -0.02 0.73 16 34 H 0.16 1.96 7.10 -2.91 -0.02 1.94 16 35 H 0.16 2.68 8.06 -2.91 -0.02 2.66 16 36 H 0.13 4.35 7.62 -2.91 -0.02 4.32 16 37 H 0.28 14.59 8.31 -92.70 -0.77 13.82 16 38 H 0.07 2.98 3.73 -2.39 -0.01 2.97 16 39 H 0.09 3.58 6.85 -2.38 -0.02 3.56 16 40 H 0.12 3.44 6.82 -2.39 -0.02 3.42 16 41 H 0.12 4.13 8.14 -2.38 -0.02 4.11 16 42 H 0.43 5.10 9.10 -74.06 -0.67 4.42 16 43 H 0.13 3.84 7.51 -2.91 -0.02 3.82 16 Total: -1.00 -72.69 368.11 1.22 -71.48 By element: Atomic # 1 Polarization: 18.28 SS G_CDS: 0.33 Total: 18.61 kcal Atomic # 6 Polarization: -34.54 SS G_CDS: 4.44 Total: -30.10 kcal Atomic # 7 Polarization: -90.09 SS G_CDS: -0.51 Total: -90.60 kcal Atomic # 8 Polarization: -128.23 SS G_CDS: -4.46 Total: -132.69 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 1.73 Total: 45.51 kcal Atomic # 16 Polarization: 118.11 SS G_CDS: -0.32 Total: 117.79 kcal Total: -72.69 1.22 -71.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001591994112.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.140 kcal (2) G-P(sol) polarization free energy of solvation -72.695 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -164.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.215 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.620 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds