Wall clock time and date at job start Sat Apr 11 2020 06:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 N 1.46495 * 109.47142 * 2 1 4 4 S 1.65597 * 120.00522 * 52.22035 * 3 2 1 5 5 O 1.42097 * 104.28243 * 181.07225 * 4 3 2 6 6 O 1.42103 * 104.27698 * 308.92966 * 4 3 2 7 7 C 1.81400 * 104.44806 * 65.00018 * 4 3 2 8 8 C 1.53007 * 109.47251 * 180.02562 * 7 4 3 9 9 C 1.52997 * 109.47385 * 179.97438 * 8 7 4 10 10 C 1.50692 * 109.47317 * 179.97438 * 9 8 7 11 11 H 1.08004 * 120.00258 * 0.02562 * 10 9 8 12 12 C 1.37876 * 120.00374 * 179.97438 * 10 9 8 13 13 N 1.31513 * 120.00719 * 180.02562 * 12 10 9 14 14 Si 1.86801 * 119.99676 * 0.02562 * 12 10 9 15 15 H 1.48499 * 109.47065 * 90.00160 * 14 12 10 16 16 H 1.48496 * 109.47341 * 209.99988 * 14 12 10 17 17 H 1.48497 * 109.47322 * 330.00037 * 14 12 10 18 18 C 1.50705 * 109.47092 * 119.99842 * 2 1 3 19 19 O 1.20822 * 120.00220 * 24.99947 * 18 2 1 20 20 O 1.34229 * 119.99848 * 205.00292 * 18 2 1 21 21 C 1.50699 * 109.47403 * 239.99558 * 2 1 3 22 22 C 1.38228 * 120.00023 * 275.33900 * 21 2 1 23 23 C 1.38237 * 119.99979 * 179.80843 * 22 21 2 24 24 C 1.38237 * 119.99694 * 0.39431 * 23 22 21 25 25 C 1.38232 * 120.00399 * 359.85075 * 24 23 22 26 26 C 1.38235 * 119.99536 * 95.60167 * 21 2 1 27 27 H 1.09006 * 109.47255 * 300.00574 * 1 2 3 28 28 H 1.08998 * 109.47694 * 59.99991 * 1 2 3 29 29 H 1.08999 * 109.47311 * 180.02562 * 1 2 3 30 30 H 0.97006 * 120.00074 * 232.21923 * 3 2 1 31 31 H 1.09007 * 109.47252 * 299.99989 * 7 4 3 32 32 H 1.08996 * 109.47533 * 60.00504 * 7 4 3 33 33 H 1.09000 * 109.46649 * 300.00348 * 8 7 4 34 34 H 1.08996 * 109.46820 * 59.99603 * 8 7 4 35 35 H 1.08999 * 109.47041 * 300.00428 * 9 8 7 36 36 H 1.09001 * 109.46884 * 59.99592 * 9 8 7 37 37 H 0.96992 * 120.00377 * 179.97438 * 13 12 10 38 38 H 0.96701 * 116.99815 * 179.97438 * 20 18 2 39 39 H 1.07997 * 120.00395 * 359.97438 * 22 21 2 40 40 H 1.07995 * 120.00624 * 180.22467 * 23 22 21 41 41 H 1.08001 * 119.99854 * 179.84120 * 24 23 22 42 42 H 1.08002 * 120.00264 * 179.97438 * 25 24 23 43 43 H 1.07998 * 120.00332 * 359.97438 * 26 21 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 16 1.4660 2.4548 1.1334 5 8 2.1250 3.6723 0.8134 6 8 0.0511 2.3461 1.0590 7 6 2.0727 1.7984 2.7120 8 6 1.6216 2.7138 3.8520 9 6 2.1328 2.1599 5.1835 10 6 1.6891 3.0618 6.3062 11 1 1.1009 3.9419 6.0917 12 6 2.0330 2.7630 7.6075 13 7 1.6454 3.5498 8.5875 14 14 3.0497 1.2405 7.9787 15 1 4.4931 1.5874 7.9391 16 1 2.7005 0.7290 9.3284 17 1 2.7639 0.1948 6.9639 18 6 2.0323 -0.7104 1.2305 19 8 1.3396 -1.5362 1.7765 20 8 3.2493 -0.4257 1.7200 21 6 2.0323 -0.7105 -1.2304 22 6 2.1577 -2.0871 -1.2308 23 6 2.6148 -2.7391 -2.3608 24 6 2.9542 -2.0138 -3.4875 25 6 2.8336 -0.6367 -3.4854 26 6 2.3729 0.0150 -2.3567 27 1 -0.3634 0.5139 0.8900 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3634 -1.0276 0.0005 30 1 2.6652 1.6669 -0.6640 31 1 1.6693 0.7979 2.8686 32 1 3.1615 1.7522 2.6919 33 1 2.0246 3.7144 3.6956 34 1 0.5328 2.7597 3.8720 35 1 1.7295 1.1594 5.3396 36 1 3.2216 2.1137 5.1637 37 1 1.8871 3.3393 9.5030 38 1 3.5277 -0.9068 2.5113 39 1 1.8961 -2.6535 -0.3493 40 1 2.7094 -3.8149 -2.3624 41 1 3.3138 -2.5230 -4.3695 42 1 3.0992 -0.0700 -4.3656 43 1 2.2785 1.0908 -2.3551 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001593318747.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:07 Heat of formation + Delta-G solvation = -156.872884 kcal Electronic energy + Delta-G solvation = -28587.418658 eV Core-core repulsion = 24531.021901 eV Total energy + Delta-G solvation = -4056.396757 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.19453 -40.14103 -38.46482 -37.45915 -37.30839 -37.05765 -36.53350 -34.28202 -32.47721 -31.71584 -30.31469 -30.16593 -26.52371 -25.50950 -24.00617 -23.35848 -22.31018 -21.47901 -20.51161 -19.49009 -19.31010 -18.99056 -18.42808 -17.84145 -17.41311 -17.06679 -16.62878 -16.40180 -16.20777 -15.77248 -15.66715 -15.26214 -14.93612 -14.80960 -14.50113 -14.26902 -14.15390 -13.97820 -13.72129 -13.51001 -13.36812 -13.30628 -13.24687 -13.00920 -12.82803 -12.70805 -12.55945 -12.47308 -12.34268 -11.99410 -11.87254 -11.75396 -11.68175 -11.46312 -11.39802 -10.82303 -10.78807 -9.90986 -9.81363 -8.31198 -6.37135 -0.94191 0.23271 0.40455 0.77679 1.34669 1.37946 1.48867 1.52335 1.74705 2.34742 2.54983 2.76524 3.02543 3.04034 3.18303 3.54047 3.62869 3.70552 3.89339 3.94291 4.05581 4.17517 4.27213 4.27950 4.52442 4.53733 4.56995 4.66058 4.74610 4.82137 4.91863 4.92277 5.06856 5.20260 5.29289 5.39589 5.42170 5.44692 5.49304 5.56659 5.60417 5.80927 5.99765 6.23524 6.70902 6.73576 7.27467 8.85699 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.018076 B = 0.003301 C = 0.002987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1548.645335 B = 8479.934083 C = 9373.037645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.241 3.759 3 N -1.089 6.089 4 S 2.616 3.384 5 O -0.975 6.975 6 O -0.969 6.969 7 C -0.614 4.614 8 C -0.101 4.101 9 C -0.003 4.003 10 C -0.543 4.543 11 H 0.031 0.969 12 C 0.002 3.998 13 N -0.951 5.951 14 Si 0.954 3.046 15 H -0.261 1.261 16 H -0.286 1.286 17 H -0.241 1.241 18 C 0.461 3.539 19 O -0.516 6.516 20 O -0.499 6.499 21 C -0.095 4.095 22 C -0.125 4.125 23 C -0.117 4.117 24 C -0.112 4.112 25 C -0.115 4.115 26 C -0.111 4.111 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.434 0.566 31 H 0.127 0.873 32 H 0.167 0.833 33 H 0.070 0.930 34 H 0.062 0.938 35 H 0.026 0.974 36 H 0.034 0.966 37 H 0.267 0.733 38 H 0.431 0.569 39 H 0.117 0.883 40 H 0.144 0.856 41 H 0.151 0.849 42 H 0.152 0.848 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.049 -15.095 -28.124 32.487 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.150 3.850 3 N -0.852 5.852 4 S 2.712 3.288 5 O -0.965 6.965 6 O -0.959 6.959 7 C -0.745 4.745 8 C -0.140 4.140 9 C -0.041 4.041 10 C -0.581 4.581 11 H 0.050 0.950 12 C -0.195 4.195 13 N -0.592 5.592 14 Si 0.776 3.224 15 H -0.186 1.186 16 H -0.212 1.212 17 H -0.164 1.164 18 C 0.301 3.699 19 O -0.403 6.403 20 O -0.313 6.313 21 C -0.096 4.096 22 C -0.143 4.143 23 C -0.135 4.135 24 C -0.130 4.130 25 C -0.132 4.132 26 C -0.129 4.129 27 H 0.106 0.894 28 H 0.114 0.886 29 H 0.106 0.894 30 H 0.274 0.726 31 H 0.146 0.854 32 H 0.185 0.815 33 H 0.088 0.912 34 H 0.081 0.919 35 H 0.045 0.955 36 H 0.053 0.947 37 H 0.076 0.924 38 H 0.294 0.706 39 H 0.135 0.865 40 H 0.162 0.838 41 H 0.168 0.832 42 H 0.170 0.830 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 5.106 -14.344 -28.209 32.056 hybrid contribution 0.819 -0.839 1.663 2.035 sum 5.925 -15.183 -26.546 31.150 Atomic orbital electron populations 1.22721 0.88993 1.05123 1.06634 1.18837 0.95726 0.80741 0.89682 1.55559 1.60664 1.20446 1.48514 1.04722 0.74445 0.73449 0.76228 1.93570 1.76887 1.43064 1.83024 1.93561 1.30348 1.85918 1.86080 1.30722 1.15261 1.10777 1.17743 1.21186 1.01004 0.97894 0.93893 1.19474 0.97095 0.96038 0.91517 1.21532 1.34106 1.10213 0.92285 0.95014 1.26094 0.97104 1.00420 0.95904 1.70074 1.48167 1.40448 1.00473 0.85614 0.79200 0.79597 0.77993 1.18622 1.21240 1.16420 1.24027 0.79822 0.80938 0.85091 1.90781 1.57620 1.33098 1.58836 1.84555 1.33108 1.65390 1.48260 1.19214 1.02932 0.93998 0.93465 1.21136 1.00060 0.93286 0.99856 1.21398 0.98253 1.01250 0.92595 1.21623 0.98147 0.94432 0.98818 1.21512 0.98235 0.95100 0.98387 1.21154 0.98457 1.00938 0.92357 0.89377 0.88557 0.89392 0.72565 0.85437 0.81508 0.91171 0.91889 0.95544 0.94726 0.92416 0.70647 0.86457 0.83832 0.83162 0.83000 0.84130 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.91 7.16 71.98 0.52 -3.40 16 2 C 0.24 4.82 0.95 2.11 0.00 4.82 16 3 N -1.09 -20.97 4.91 -158.20 -0.78 -21.74 16 4 S 2.62 70.88 5.37 -56.49 -0.30 70.57 16 5 O -0.98 -31.36 18.08 -127.65 -2.31 -33.67 16 6 O -0.97 -30.87 14.35 -127.65 -1.83 -32.70 16 7 C -0.61 -17.12 4.23 71.98 0.30 -16.81 16 8 C -0.10 -3.86 5.16 30.60 0.16 -3.70 16 9 C 0.00 -0.12 4.04 29.84 0.12 0.00 16 10 C -0.54 -31.50 9.66 25.60 0.25 -31.25 16 11 H 0.03 2.03 7.99 -2.91 -0.02 2.01 16 12 C 0.00 0.09 5.47 84.65 0.46 0.56 16 13 N -0.95 -60.13 13.96 21.45 0.30 -59.83 16 14 Si 0.95 43.27 27.47 68.60 1.88 45.16 16 15 H -0.26 -11.20 7.11 99.48 0.71 -10.50 16 16 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 17 H -0.24 -9.87 6.54 99.48 0.65 -9.22 16 18 C 0.46 9.92 3.42 71.24 0.24 10.17 16 19 O -0.52 -13.64 16.26 21.98 0.36 -13.29 16 20 O -0.50 -8.25 10.67 -51.41 -0.55 -8.79 16 21 C -0.09 -1.58 4.79 -19.87 -0.10 -1.67 16 22 C -0.12 -2.01 9.15 22.27 0.20 -1.81 16 23 C -0.12 -1.40 10.05 22.27 0.22 -1.18 16 24 C -0.11 -1.07 10.05 22.27 0.22 -0.84 16 25 C -0.11 -1.14 10.05 22.27 0.22 -0.92 16 26 C -0.11 -1.46 8.99 22.27 0.20 -1.26 16 27 H 0.09 2.34 5.44 -2.38 -0.01 2.33 16 28 H 0.10 1.89 8.14 -2.39 -0.02 1.87 16 29 H 0.09 1.81 7.87 -2.39 -0.02 1.79 16 30 H 0.43 6.22 6.70 -96.74 -0.65 5.58 16 31 H 0.13 3.33 5.73 -2.39 -0.01 3.31 16 32 H 0.17 3.71 7.46 -2.39 -0.02 3.69 16 33 H 0.07 2.69 8.14 -2.39 -0.02 2.67 16 34 H 0.06 2.48 8.14 -2.39 -0.02 2.46 16 35 H 0.03 1.16 7.20 -2.39 -0.02 1.14 16 36 H 0.03 1.44 7.57 -2.39 -0.02 1.43 16 37 H 0.27 15.68 8.31 -92.71 -0.77 14.91 16 38 H 0.43 4.31 9.10 -74.06 -0.67 3.64 16 39 H 0.12 2.06 6.78 -2.91 -0.02 2.04 16 40 H 0.14 1.14 8.06 -2.91 -0.02 1.11 16 41 H 0.15 0.64 8.06 -2.91 -0.02 0.62 16 42 H 0.15 0.75 8.06 -2.91 -0.02 0.73 16 43 H 0.14 1.46 6.53 -2.91 -0.02 1.44 16 Total: -1.00 -80.24 360.26 -0.51 -80.75 By element: Atomic # 1 Polarization: 21.15 SS G_CDS: -0.32 Total: 20.84 kcal Atomic # 6 Polarization: -50.33 SS G_CDS: 3.03 Total: -47.30 kcal Atomic # 7 Polarization: -81.10 SS G_CDS: -0.48 Total: -81.57 kcal Atomic # 8 Polarization: -84.12 SS G_CDS: -4.33 Total: -88.45 kcal Atomic # 14 Polarization: 43.27 SS G_CDS: 1.88 Total: 45.16 kcal Atomic # 16 Polarization: 70.88 SS G_CDS: -0.30 Total: 70.57 kcal Total: -80.24 -0.51 -80.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001593318747.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.120 kcal (2) G-P(sol) polarization free energy of solvation -80.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds