Wall clock time and date at job start Sat Apr 11 2020 06:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53008 * 109.47049 * 2 1 4 4 C 1.53000 * 109.46689 * 174.29146 * 3 2 1 5 5 C 1.52997 * 109.46927 * 54.29698 * 3 2 1 6 6 C 1.50699 * 109.47414 * 59.99720 * 5 3 2 7 7 O 1.20821 * 120.00279 * 359.97438 * 6 5 3 8 8 O 1.34230 * 119.99852 * 180.02562 * 6 5 3 9 9 N 1.46491 * 109.47036 * 294.29453 * 3 2 1 10 10 S 1.65608 * 119.99978 * 282.40193 * 9 3 2 11 11 O 1.42096 * 106.39977 * 45.37979 * 10 9 3 12 12 O 1.42097 * 106.40397 * 178.30471 * 10 9 3 13 13 C 1.76205 * 107.21492 * 291.84212 * 10 9 3 14 14 C 1.38634 * 119.74974 * 279.45692 * 13 10 9 15 15 C 1.37621 * 120.24967 * 179.72406 * 14 13 10 16 16 C 1.40715 * 119.74271 * 0.57359 * 15 14 13 17 17 C 1.41393 * 120.24626 * 179.68404 * 16 15 14 18 18 H 1.07998 * 119.99707 * 209.92429 * 17 16 15 19 19 C 1.39948 * 120.00038 * 29.92125 * 17 16 15 20 20 N 1.30822 * 119.99743 * 9.22522 * 19 17 16 21 21 Si 1.86792 * 119.99999 * 189.22754 * 19 17 16 22 22 H 1.48499 * 109.47339 * 60.00061 * 21 19 17 23 23 H 1.48507 * 109.47131 * 180.02562 * 21 19 17 24 24 H 1.48506 * 109.47126 * 299.99611 * 21 19 17 25 25 C 1.40718 * 119.50926 * 359.69979 * 16 15 14 26 26 C 1.37620 * 119.74935 * 0.02562 * 25 16 15 27 27 H 1.09000 * 109.47036 * 59.99407 * 1 2 3 28 28 H 1.08996 * 109.47035 * 180.02562 * 1 2 3 29 29 H 1.08998 * 109.47238 * 299.99851 * 1 2 3 30 30 H 1.08998 * 109.47238 * 240.00148 * 2 1 3 31 31 H 1.09000 * 109.47494 * 119.99972 * 2 1 3 32 32 H 1.08995 * 109.47159 * 51.81015 * 4 3 2 33 33 H 1.08998 * 109.47547 * 291.80036 * 4 3 2 34 34 H 1.09003 * 109.46977 * 171.80855 * 4 3 2 35 35 H 1.09005 * 109.47003 * 180.02562 * 5 3 2 36 36 H 1.09007 * 109.46796 * 299.99421 * 5 3 2 37 37 H 0.96699 * 116.99863 * 180.02562 * 8 6 5 38 38 H 0.96999 * 120.00204 * 102.40232 * 9 3 2 39 39 H 1.08002 * 119.87289 * 359.97438 * 14 13 10 40 40 H 1.08000 * 120.12983 * 180.28122 * 15 14 13 41 41 H 0.97006 * 120.00228 * 179.97438 * 20 19 17 42 42 H 1.08007 * 120.12625 * 179.97438 * 25 16 15 43 43 H 1.08003 * 119.87651 * 179.97438 * 26 25 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5633 1.4449 0.1435 5 6 1.4163 2.2039 1.1714 6 6 1.8000 1.5355 2.4664 7 8 2.5000 0.5508 2.4537 8 8 1.3631 2.0334 3.6338 9 7 1.6670 2.0923 -1.2588 10 16 2.5232 1.7743 -2.6403 11 8 2.6986 0.3651 -2.6881 12 8 1.8985 2.5156 -3.6792 13 6 4.1290 2.4687 -2.4300 14 6 4.3246 3.8252 -2.6386 15 6 5.5733 4.3794 -2.4718 16 6 6.6560 3.5613 -2.0997 17 6 7.9448 4.1182 -1.9319 18 1 8.8217 3.5184 -2.1257 19 6 8.0840 5.4468 -1.5147 20 7 7.0373 6.1175 -1.1073 21 14 9.7642 6.2624 -1.5397 22 1 10.2927 6.2650 -2.9275 23 1 9.6433 7.6602 -1.0530 24 1 10.6927 5.5103 -0.6578 25 6 6.4468 2.1847 -1.8962 26 6 5.1884 1.6532 -2.0632 27 1 -0.3633 0.5139 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8934 -0.5138 0.8900 32 1 3.9997 0.7836 -0.6050 33 1 3.8350 1.0956 1.1396 34 1 3.9404 2.4572 -0.0019 35 1 1.7793 3.2318 1.1711 36 1 0.3310 2.2023 1.0691 37 1 1.6357 1.5706 4.4379 38 1 0.9185 2.7088 -1.2833 39 1 3.4931 4.4502 -2.9292 40 1 5.7225 5.4372 -2.6304 41 1 7.1337 7.0383 -0.8177 42 1 7.2709 1.5475 -1.6109 43 1 5.0256 0.5969 -1.9080 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001594828906.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:15 Heat of formation + Delta-G solvation = -148.635058 kcal Electronic energy + Delta-G solvation = -29034.726818 eV Core-core repulsion = 24978.687279 eV Total energy + Delta-G solvation = -4056.039539 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.75834 -38.14186 -37.55837 -36.44934 -35.97949 -35.13659 -34.04039 -31.61209 -30.48002 -30.15172 -29.68944 -28.13539 -25.78406 -23.51940 -22.40229 -21.51260 -21.14841 -19.96789 -18.57567 -18.19855 -17.63660 -17.09995 -16.64010 -16.37084 -16.22473 -15.54889 -15.28963 -14.80596 -14.40400 -14.10825 -13.69975 -13.52862 -13.43909 -13.20496 -12.91606 -12.45225 -12.35384 -12.21508 -12.17879 -11.86350 -11.60961 -11.56062 -11.54415 -11.42711 -11.37001 -11.27083 -11.20709 -11.01104 -10.93622 -10.49085 -10.44803 -10.33724 -9.99710 -9.75550 -9.61131 -9.52929 -9.05993 -7.88605 -7.62556 -7.06227 -4.80258 1.23476 2.11234 2.24211 2.87947 2.89589 2.90694 2.92227 2.94646 3.68863 3.76148 4.27294 4.42114 4.61138 4.84579 4.95779 5.13548 5.28519 5.32878 5.37519 5.46095 5.51689 5.58719 5.84561 5.93158 5.98839 6.08727 6.12805 6.19587 6.32229 6.40598 6.50685 6.66764 6.69114 6.73476 6.84134 6.92409 7.03526 7.29925 7.35363 7.41386 7.62210 7.78068 7.80955 7.98770 8.33785 8.53343 8.64615 9.84500 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.013037 B = 0.003975 C = 0.003366 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2147.221599 B = 7042.294783 C = 8317.024989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.163 4.163 3 C 0.207 3.793 4 C -0.208 4.208 5 C -0.119 4.119 6 C 0.484 3.516 7 O -0.499 6.499 8 O -0.519 6.519 9 N -1.117 6.117 10 S 2.697 3.303 11 O -0.981 6.981 12 O -0.986 6.986 13 C -0.782 4.782 14 C -0.016 4.016 15 C -0.177 4.177 16 C 0.143 3.857 17 C -0.441 4.441 18 H 0.085 0.915 19 C 0.071 3.929 20 N -0.779 5.779 21 Si 0.919 3.081 22 H -0.261 1.261 23 H -0.275 1.275 24 H -0.262 1.262 25 C -0.235 4.235 26 C 0.003 3.997 27 H 0.055 0.945 28 H 0.053 0.947 29 H 0.046 0.954 30 H 0.096 0.904 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.090 0.910 34 H 0.080 0.920 35 H 0.115 0.885 36 H 0.112 0.888 37 H 0.409 0.591 38 H 0.409 0.591 39 H 0.099 0.901 40 H 0.124 0.876 41 H 0.287 0.713 42 H 0.100 0.900 43 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.431 -3.364 7.659 12.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.201 4.201 3 C 0.119 3.881 4 C -0.265 4.265 5 C -0.158 4.158 6 C 0.326 3.674 7 O -0.387 6.387 8 O -0.332 6.332 9 N -0.872 5.872 10 S 2.795 3.205 11 O -0.971 6.971 12 O -0.977 6.977 13 C -0.878 4.878 14 C -0.036 4.036 15 C -0.197 4.197 16 C 0.139 3.861 17 C -0.469 4.469 18 H 0.103 0.897 19 C -0.149 4.149 20 N -0.402 5.402 21 Si 0.743 3.257 22 H -0.185 1.185 23 H -0.200 1.200 24 H -0.187 1.187 25 C -0.255 4.255 26 C -0.017 4.017 27 H 0.074 0.926 28 H 0.072 0.928 29 H 0.065 0.935 30 H 0.115 0.885 31 H 0.111 0.889 32 H 0.102 0.898 33 H 0.108 0.892 34 H 0.099 0.901 35 H 0.133 0.867 36 H 0.130 0.870 37 H 0.268 0.732 38 H 0.241 0.759 39 H 0.117 0.883 40 H 0.141 0.859 41 H 0.098 0.902 42 H 0.118 0.882 43 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -9.656 -3.792 6.665 12.330 hybrid contribution 1.083 0.968 1.070 1.803 sum -8.573 -2.824 7.735 11.887 Atomic orbital electron populations 1.21809 0.96482 1.01453 1.01074 1.22524 0.95756 0.95922 1.05929 1.19714 0.95418 0.91473 0.81534 1.23215 0.92551 1.04921 1.05828 1.21687 1.04062 1.01729 0.88351 1.23179 0.76533 0.82148 0.85531 1.90654 1.34963 1.25718 1.87339 1.84534 1.71968 1.59273 1.17380 1.55859 1.46766 1.60217 1.24395 1.01170 0.74200 0.73450 0.71632 1.93451 1.87097 1.30535 1.86034 1.93501 1.77007 1.73733 1.53432 1.29190 1.18720 1.04524 1.35321 1.20213 0.97245 0.91800 0.94336 1.21363 0.92363 1.00344 1.05648 1.17856 0.93165 0.91066 0.83971 1.19876 0.93759 0.95963 1.37272 0.89667 1.26072 0.99359 0.97044 0.92459 1.69771 1.31400 1.11062 1.27972 0.86168 0.81156 0.78297 0.80102 1.18495 1.19988 1.18672 1.21115 0.95912 0.96158 1.12359 1.20227 0.92508 0.96730 0.92221 0.92622 0.92819 0.93537 0.88544 0.88926 0.89847 0.89194 0.90084 0.86722 0.86962 0.73216 0.75864 0.88253 0.85857 0.90167 0.88184 0.87159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.70 9.29 37.16 0.35 -1.36 16 2 C -0.16 -2.25 4.68 -26.73 -0.13 -2.38 16 3 C 0.21 2.85 0.55 -131.82 -0.07 2.78 16 4 C -0.21 -3.38 6.20 37.16 0.23 -3.15 16 5 C -0.12 -1.28 4.53 -27.89 -0.13 -1.41 16 6 C 0.48 5.44 7.68 36.01 0.28 5.72 16 7 O -0.50 -6.85 12.17 -18.75 -0.23 -7.08 16 8 O -0.52 -4.51 13.42 -39.26 -0.53 -5.04 16 9 N -1.12 -15.87 4.99 0.53 0.00 -15.87 16 10 S 2.70 50.16 5.31 -107.50 -0.57 49.59 16 11 O -0.98 -19.65 13.95 -57.17 -0.80 -20.45 16 12 O -0.99 -20.68 17.53 -57.17 -1.00 -21.69 16 13 C -0.78 -16.42 4.13 -39.29 -0.16 -16.58 16 14 C -0.02 -0.35 9.49 -39.66 -0.38 -0.72 16 15 C -0.18 -4.30 8.65 -38.87 -0.34 -4.63 16 16 C 0.14 3.54 5.54 -106.83 -0.59 2.94 16 17 C -0.44 -10.70 9.06 -37.74 -0.34 -11.05 16 18 H 0.09 1.97 7.86 -52.49 -0.41 1.55 16 19 C 0.07 1.62 5.27 -17.34 -0.09 1.53 16 20 N -0.78 -18.30 10.84 55.55 0.60 -17.70 16 21 Si 0.92 17.09 29.57 -169.99 -5.03 12.07 16 22 H -0.26 -4.83 7.11 56.52 0.40 -4.43 16 23 H -0.28 -4.99 7.11 56.52 0.40 -4.58 16 24 H -0.26 -4.84 7.11 56.52 0.40 -4.44 16 25 C -0.23 -5.39 9.80 -38.87 -0.38 -5.77 16 26 C 0.00 0.06 6.71 -39.66 -0.27 -0.20 16 27 H 0.05 0.62 7.77 -51.93 -0.40 0.21 16 28 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 29 H 0.05 0.44 6.31 -51.93 -0.33 0.11 16 30 H 0.10 1.54 5.91 -51.93 -0.31 1.24 16 31 H 0.09 1.31 5.67 -51.93 -0.29 1.01 16 32 H 0.08 1.46 3.72 -51.93 -0.19 1.27 16 33 H 0.09 1.44 5.38 -51.93 -0.28 1.16 16 34 H 0.08 1.44 6.78 -51.93 -0.35 1.09 16 35 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 36 H 0.11 0.94 6.34 -51.93 -0.33 0.61 16 37 H 0.41 1.89 9.10 45.56 0.41 2.30 16 38 H 0.41 4.63 8.67 -34.48 -0.30 4.34 16 39 H 0.10 2.03 7.83 -52.49 -0.41 1.62 16 40 H 0.12 3.07 6.25 -52.49 -0.33 2.74 16 41 H 0.29 6.12 8.30 -40.82 -0.34 5.78 16 42 H 0.10 2.14 8.06 -52.48 -0.42 1.72 16 43 H 0.11 2.18 6.11 -52.48 -0.32 1.86 16 LS Contribution 347.05 15.07 5.23 5.23 Total: -1.00 -30.60 347.05 -8.58 -39.18 By element: Atomic # 1 Polarization: 20.28 SS G_CDS: -4.25 Total: 16.03 kcal Atomic # 6 Polarization: -32.26 SS G_CDS: -2.02 Total: -34.28 kcal Atomic # 7 Polarization: -34.17 SS G_CDS: 0.60 Total: -33.57 kcal Atomic # 8 Polarization: -51.69 SS G_CDS: -2.56 Total: -54.25 kcal Atomic # 14 Polarization: 17.09 SS G_CDS: -5.03 Total: 12.07 kcal Atomic # 16 Polarization: 50.16 SS G_CDS: -0.57 Total: 49.59 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -30.60 -8.58 -39.18 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001594828906.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.458 kcal (2) G-P(sol) polarization free energy of solvation -30.595 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.053 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.635 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds