Wall clock time and date at job start Sat Apr 11 2020 06:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46505 * 109.46921 * 2 1 4 4 C 1.46496 * 120.00098 * 275.00053 * 3 2 1 5 5 C 1.52999 * 109.47298 * 275.00514 * 4 3 2 6 6 S 1.65598 * 119.99568 * 95.00587 * 3 2 1 7 7 O 1.42101 * 106.40067 * 336.45513 * 6 3 2 8 8 O 1.42106 * 106.39864 * 203.53996 * 6 3 2 9 9 C 1.76197 * 107.21824 * 90.00025 * 6 3 2 10 10 C 1.38393 * 119.92566 * 90.00040 * 9 6 3 11 11 C 1.38358 * 120.30968 * 180.23125 * 10 9 6 12 12 C 1.37955 * 120.15437 * 359.48908 * 11 10 9 13 13 C 1.50694 * 120.07838 * 180.25651 * 12 11 10 14 14 C 1.39652 * 119.84064 * 0.50116 * 12 11 10 15 15 C 1.47661 * 120.15046 * 179.72375 * 14 12 11 16 16 O 1.21511 * 120.00195 * 353.80461 * 15 14 12 17 17 O 1.34728 * 119.99803 * 173.80046 * 15 14 12 18 18 C 1.34852 * 116.99922 * 180.02562 * 17 15 14 19 19 H 1.08000 * 120.00458 * 359.97438 * 18 17 15 20 20 C 1.38813 * 120.00152 * 180.02562 * 18 17 15 21 21 N 1.31413 * 119.99876 * 359.97438 * 20 18 17 22 22 Si 1.86797 * 120.00388 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.46917 * 59.99646 * 22 20 18 24 24 H 1.48492 * 109.47617 * 180.02562 * 22 20 18 25 25 H 1.48508 * 109.47222 * 300.00300 * 22 20 18 26 26 C 1.37913 * 119.92123 * 269.97397 * 9 6 3 27 27 H 1.09001 * 109.46681 * 299.99833 * 1 2 3 28 28 H 1.08991 * 109.46999 * 59.99587 * 1 2 3 29 29 H 1.08997 * 109.47034 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.46537 * 240.00699 * 2 1 3 31 31 H 1.08992 * 109.47521 * 120.00397 * 2 1 3 32 32 H 1.09000 * 109.47275 * 35.00439 * 4 3 2 33 33 H 1.09003 * 109.47098 * 154.99740 * 4 3 2 34 34 H 1.09004 * 109.47269 * 180.02562 * 5 4 3 35 35 H 1.09003 * 109.46565 * 299.99471 * 5 4 3 36 36 H 1.08997 * 109.47233 * 60.00126 * 5 4 3 37 37 H 1.08004 * 119.84426 * 359.95014 * 10 9 6 38 38 H 1.08005 * 119.92064 * 179.73916 * 11 10 9 39 39 H 1.09000 * 109.47344 * 263.67187 * 13 12 11 40 40 H 1.08999 * 109.47234 * 23.67215 * 13 12 11 41 41 H 1.09001 * 109.47237 * 143.67036 * 13 12 11 42 42 H 0.97007 * 120.00142 * 179.97438 * 21 20 18 43 43 H 1.08001 * 120.07966 * 0.02562 * 26 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.1583 2.1088 -1.2639 5 6 3.5151 1.7840 -1.8918 6 16 2.4123 2.1201 1.4287 7 8 1.6870 1.4413 2.4448 8 8 2.3057 3.5186 1.1999 9 6 4.1171 1.7940 1.7318 10 6 5.0820 2.6631 1.2533 11 6 6.4232 2.4122 1.4826 12 6 6.8070 1.2980 2.1998 13 6 8.2680 1.0295 2.4535 14 6 5.8387 0.4169 2.6858 15 6 6.2422 -0.7810 3.4491 16 8 7.4190 -1.0631 3.5598 17 8 5.3057 -1.5612 4.0230 18 6 5.7415 -2.6392 4.7059 19 1 6.7997 -2.8443 4.7733 20 6 4.8299 -3.4860 5.3215 21 7 3.5422 -3.2369 5.2391 22 14 5.4335 -4.9790 6.2681 23 1 6.3184 -4.5379 7.3762 24 1 4.2707 -5.7151 6.8256 25 1 6.1917 -5.8711 5.3545 26 6 4.4868 0.6736 2.4459 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 1.8933 -0.5138 -0.8901 31 1 1.8935 -0.5138 0.8899 32 1 1.3617 1.8099 -1.9452 33 1 2.0921 3.1804 -1.0755 34 1 3.6194 2.3256 -2.8320 35 1 4.3116 2.0830 -1.2104 36 1 3.5812 0.7125 -2.0802 37 1 4.7869 3.5388 0.6943 38 1 7.1711 3.0924 1.1026 39 1 8.6442 0.3311 1.7060 40 1 8.8255 1.9641 2.3907 41 1 8.3911 0.5992 3.4474 42 1 2.9052 -3.8288 5.6689 43 1 3.7328 -0.0038 2.8189 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000006156496.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:10 Heat of formation + Delta-G solvation = -150.336960 kcal Electronic energy + Delta-G solvation = -28523.236599 eV Core-core repulsion = 24467.123260 eV Total energy + Delta-G solvation = -4056.113339 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.53508 -39.94115 -38.50304 -38.11921 -37.38124 -37.03586 -34.43639 -33.94218 -32.84592 -32.53479 -29.72846 -28.70693 -27.54786 -25.14520 -24.61270 -23.37698 -23.02781 -22.25052 -19.99801 -19.93934 -19.23013 -18.62453 -18.13377 -17.37804 -16.81647 -16.72562 -16.60417 -16.40524 -16.10899 -15.69275 -15.10438 -15.06635 -14.76899 -14.75116 -14.53566 -14.32674 -13.86959 -13.72875 -13.40008 -13.34392 -13.28512 -13.25803 -13.22784 -13.04498 -12.99791 -12.85219 -12.68898 -12.59579 -12.39885 -12.20250 -12.15714 -11.95694 -11.86396 -11.62529 -10.83751 -10.74801 -10.34215 -10.21545 -10.08405 -8.58979 -6.37629 -0.78009 -0.48666 -0.17303 1.31413 1.32876 1.48617 1.58544 1.88965 2.04905 2.40984 2.60074 2.63904 2.97397 3.14862 3.60935 3.70295 3.72697 3.85529 4.07463 4.23495 4.27940 4.35183 4.46580 4.47492 4.49992 4.55963 4.60452 4.68555 4.73829 4.77764 4.82957 4.90172 4.93302 5.05980 5.07087 5.09268 5.16140 5.31683 5.34390 5.44598 5.44993 5.64958 5.66993 5.77576 6.54648 6.83997 7.66515 8.60957 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.011473 B = 0.004190 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2439.902596 B = 6680.842753 C = 8272.480451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.111 3.889 3 N -0.988 5.988 4 C 0.103 3.897 5 C -0.180 4.180 6 S 2.703 3.297 7 O -0.988 6.988 8 O -0.966 6.966 9 C -0.696 4.696 10 C 0.009 3.991 11 C -0.135 4.135 12 C 0.018 3.982 13 C -0.124 4.124 14 C -0.148 4.148 15 C 0.428 3.572 16 O -0.560 6.560 17 O -0.236 6.236 18 C -0.420 4.420 19 H 0.088 0.912 20 C -0.004 4.004 21 N -0.897 5.897 22 Si 1.021 2.979 23 H -0.261 1.261 24 H -0.260 1.260 25 H -0.258 1.258 26 C 0.018 3.982 27 H 0.041 0.959 28 H 0.081 0.919 29 H 0.078 0.922 30 H 0.107 0.893 31 H 0.059 0.941 32 H 0.109 0.891 33 H 0.096 0.904 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.058 0.942 37 H 0.179 0.821 38 H 0.188 0.812 39 H 0.081 0.919 40 H 0.103 0.897 41 H 0.067 0.933 42 H 0.281 0.719 43 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.481 11.875 -16.977 20.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.014 4.014 3 N -0.828 5.828 4 C -0.021 4.021 5 C -0.239 4.239 6 S 2.793 3.207 7 O -0.978 6.978 8 O -0.956 6.956 9 C -0.783 4.783 10 C -0.010 4.010 11 C -0.153 4.153 12 C 0.017 3.983 13 C -0.179 4.179 14 C -0.150 4.150 15 C 0.278 3.722 16 O -0.459 6.459 17 O -0.144 6.144 18 C -0.496 4.496 19 H 0.105 0.895 20 C -0.205 4.205 21 N -0.533 5.533 22 Si 0.839 3.161 23 H -0.185 1.185 24 H -0.184 1.184 25 H -0.182 1.182 26 C -0.002 4.002 27 H 0.060 0.940 28 H 0.100 0.900 29 H 0.097 0.903 30 H 0.125 0.875 31 H 0.078 0.922 32 H 0.127 0.873 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.196 0.804 38 H 0.205 0.795 39 H 0.099 0.901 40 H 0.122 0.878 41 H 0.086 0.914 42 H 0.090 0.910 43 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -1.979 12.182 -16.357 20.491 hybrid contribution 0.754 -1.425 0.894 1.843 sum -1.226 10.757 -15.464 18.877 Atomic orbital electron populations 1.22207 0.94873 1.03377 1.02514 1.21433 0.95488 0.80577 1.03885 1.57441 1.78994 1.24383 1.21951 1.21708 0.99625 0.96995 0.83789 1.22324 0.96576 1.02874 1.02082 1.01551 0.73302 0.72972 0.72830 1.93586 1.70666 1.75856 1.57724 1.93517 1.86480 1.30034 1.85576 1.30981 1.26659 1.05437 1.15192 1.21504 0.92156 0.95762 0.91587 1.21561 0.97107 0.97086 0.99581 1.20658 0.96354 0.91478 0.89810 1.21170 0.89535 1.03427 1.03799 1.19326 0.95025 0.95839 1.04803 1.21547 0.84491 0.85151 0.81006 1.90541 1.19212 1.73228 1.62913 1.83927 1.38095 1.34815 1.57578 1.21496 0.94698 1.01411 1.31965 0.89455 1.26649 0.94743 1.01807 0.97291 1.70083 1.02263 1.39029 1.41946 0.84647 0.78334 0.75170 0.77953 1.18536 1.18356 1.18237 1.21038 0.95521 0.93759 0.89906 0.94019 0.90037 0.90309 0.87453 0.92206 0.87263 0.88559 0.88963 0.93091 0.92280 0.80362 0.79481 0.90082 0.87837 0.91391 0.90959 0.85883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.42 10.24 71.98 0.74 -2.68 16 2 C 0.11 2.45 6.07 86.38 0.52 2.97 16 3 N -0.99 -21.67 2.78 -515.77 -1.44 -23.10 16 4 C 0.10 1.47 6.40 86.38 0.55 2.03 16 5 C -0.18 -2.27 10.24 71.98 0.74 -1.53 16 6 S 2.70 80.40 5.64 -56.49 -0.32 80.08 16 7 O -0.99 -38.59 16.24 -128.00 -2.08 -40.67 16 8 O -0.97 -28.50 15.83 -128.00 -2.03 -30.53 16 9 C -0.70 -21.65 5.97 22.23 0.13 -21.51 16 10 C 0.01 0.21 8.42 22.34 0.19 0.40 16 11 C -0.14 -3.09 9.66 22.23 0.21 -2.87 16 12 C 0.02 0.57 5.92 -19.59 -0.12 0.46 16 13 C -0.12 -3.67 8.73 71.23 0.62 -3.04 16 14 C -0.15 -6.29 5.87 -20.10 -0.12 -6.40 16 15 C 0.43 22.89 7.76 70.31 0.55 23.44 16 16 O -0.56 -30.45 12.59 19.80 0.25 -30.20 16 17 O -0.24 -14.53 9.01 11.40 0.10 -14.43 16 18 C -0.42 -25.98 9.65 67.96 0.66 -25.32 16 19 H 0.09 5.37 6.86 -2.91 -0.02 5.35 16 20 C 0.00 -0.22 5.50 84.89 0.47 0.25 16 21 N -0.90 -54.29 13.67 21.63 0.30 -53.99 16 22 Si 1.02 43.79 29.55 68.60 2.03 45.82 16 23 H -0.26 -10.77 7.11 99.48 0.71 -10.07 16 24 H -0.26 -10.28 7.11 99.48 0.71 -9.58 16 25 H -0.26 -10.53 7.11 99.48 0.71 -9.82 16 26 C 0.02 0.71 9.09 22.54 0.20 0.91 16 27 H 0.04 1.02 8.14 -2.39 -0.02 1.00 16 28 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.08 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.11 1.76 8.11 -2.39 -0.02 1.74 16 31 H 0.06 1.68 7.61 -2.39 -0.02 1.66 16 32 H 0.11 1.05 8.11 -2.39 -0.02 1.03 16 33 H 0.10 1.35 6.91 -2.39 -0.02 1.33 16 34 H 0.09 0.74 8.14 -2.38 -0.02 0.72 16 35 H 0.05 0.72 7.00 -2.39 -0.02 0.70 16 36 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 37 H 0.18 2.84 7.61 -2.91 -0.02 2.82 16 38 H 0.19 2.40 8.06 -2.91 -0.02 2.38 16 39 H 0.08 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.10 2.09 8.04 -2.39 -0.02 2.07 16 41 H 0.07 2.56 5.86 -2.39 -0.01 2.55 16 42 H 0.28 15.42 8.31 -92.70 -0.77 14.65 16 43 H 0.12 5.69 7.18 -2.91 -0.02 5.67 16 Total: -1.00 -83.20 374.65 3.19 -80.02 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 1.02 Total: 19.92 kcal Atomic # 6 Polarization: -38.27 SS G_CDS: 5.35 Total: -32.92 kcal Atomic # 7 Polarization: -75.95 SS G_CDS: -1.14 Total: -77.09 kcal Atomic # 8 Polarization: -112.07 SS G_CDS: -3.75 Total: -115.82 kcal Atomic # 14 Polarization: 43.79 SS G_CDS: 2.03 Total: 45.82 kcal Atomic # 16 Polarization: 80.40 SS G_CDS: -0.32 Total: 80.08 kcal Total: -83.20 3.19 -80.02 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000006156496.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.321 kcal (2) G-P(sol) polarization free energy of solvation -83.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.016 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds