Wall clock time and date at job start Sat Apr 11 2020 06:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46510 * 119.99910 * 2 1 4 4 S 1.65594 * 120.00527 * 179.97438 * 2 1 3 5 5 O 1.42099 * 106.40682 * 203.53922 * 4 2 1 6 6 O 1.42109 * 106.39756 * 336.46087 * 4 2 1 7 7 C 1.76204 * 107.22029 * 89.99701 * 4 2 1 8 8 C 1.38390 * 119.92430 * 269.73610 * 7 4 2 9 9 C 1.38346 * 120.29960 * 179.72233 * 8 7 4 10 10 C 1.37970 * 120.14991 * 0.54568 * 9 8 7 11 11 C 1.39606 * 119.84604 * 359.72585 * 10 9 8 12 12 C 1.47728 * 120.14967 * 180.02562 * 11 10 9 13 13 O 1.21464 * 120.00404 * 179.97438 * 12 11 10 14 14 O 1.34714 * 119.99538 * 359.97438 * 12 11 10 15 15 C 1.45208 * 116.99560 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.47007 * 180.02562 * 15 14 12 17 17 C 1.53001 * 109.47196 * 180.02562 * 16 15 14 18 18 C 1.50699 * 109.46939 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00182 * 359.97438 * 18 17 16 20 20 C 1.37882 * 119.99581 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99793 * 180.02562 * 20 18 17 22 22 Si 1.86793 * 120.00274 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47111 * 89.99969 * 22 20 18 24 24 H 1.48494 * 109.47455 * 210.00545 * 22 20 18 25 25 H 1.48502 * 109.47280 * 330.00568 * 22 20 18 26 26 C 1.37925 * 119.92249 * 90.00099 * 7 4 2 27 27 H 1.09002 * 109.47391 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46813 * 240.00026 * 1 2 3 29 29 H 1.09004 * 109.47041 * 120.00153 * 1 2 3 30 30 H 1.08999 * 109.47096 * 89.99783 * 3 2 1 31 31 H 1.09001 * 109.46763 * 210.00177 * 3 2 1 32 32 H 1.09005 * 109.46576 * 330.00159 * 3 2 1 33 33 H 1.07995 * 119.85178 * 359.97438 * 8 7 4 34 34 H 1.08001 * 119.92467 * 180.25067 * 9 8 7 35 35 H 1.08002 * 120.07525 * 179.74457 * 10 9 8 36 36 H 1.08998 * 109.46786 * 299.99694 * 15 14 12 37 37 H 1.08995 * 109.46919 * 60.00090 * 15 14 12 38 38 H 1.09002 * 109.46746 * 300.00134 * 16 15 14 39 39 H 1.09002 * 109.47062 * 59.99562 * 16 15 14 40 40 H 1.09001 * 109.46927 * 300.00038 * 17 16 15 41 41 H 1.08995 * 109.46849 * 59.99864 * 17 16 15 42 42 H 0.96996 * 119.99952 * 180.02562 * 21 20 18 43 43 H 1.08003 * 120.07224 * 359.97438 * 26 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 16 2.2931 -1.4340 0.0006 5 8 3.5760 -1.1564 0.5449 6 8 1.4114 -2.4062 0.5455 7 6 2.5539 -1.8865 -1.6822 8 6 1.6200 -2.6682 -2.3396 9 6 1.8142 -3.0233 -3.6625 10 6 2.9471 -2.6090 -4.3322 11 6 3.8959 -1.8250 -3.6733 12 6 5.1111 -1.3772 -4.3840 13 8 5.9347 -0.6948 -3.8084 14 8 5.3059 -1.7258 -5.6706 15 6 6.5218 -1.2498 -6.3057 16 6 6.5672 -1.7420 -7.7537 17 6 7.8488 -1.2410 -8.4227 18 6 7.8937 -1.7263 -9.8487 19 1 7.0890 -2.3318 -10.2387 20 6 8.9628 -1.3980 -10.6552 21 7 9.0018 -1.8211 -11.8998 22 14 10.3550 -0.3513 -9.9805 23 1 11.3929 -1.2315 -9.3861 24 1 10.9532 0.4460 -11.0812 25 1 9.8257 0.5639 -8.9376 26 6 3.6909 -1.4655 -2.3396 27 1 -0.3634 1.0277 0.0005 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3633 -0.5139 -0.8900 30 1 2.3791 1.5835 1.0277 31 1 3.1499 1.1384 -0.5139 32 1 1.6083 2.0284 -0.5138 33 1 0.7338 -2.9991 -1.8187 34 1 1.0795 -3.6302 -4.1709 35 1 3.0994 -2.8904 -5.3637 36 1 6.5361 -0.1600 -6.2922 37 1 7.3876 -1.6314 -5.7646 38 1 6.5526 -2.8318 -7.7676 39 1 5.7013 -1.3601 -8.2945 40 1 7.8638 -0.1512 -8.4087 41 1 8.7143 -1.6232 -7.8817 42 1 9.7541 -1.5905 -12.4671 43 1 4.4207 -0.8587 -1.8242 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000025394242.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:14 Heat of formation + Delta-G solvation = -133.823590 kcal Electronic energy + Delta-G solvation = -26522.531398 eV Core-core repulsion = 22467.134133 eV Total energy + Delta-G solvation = -4055.397265 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.71420 -39.16779 -37.73655 -36.68266 -36.62316 -36.27697 -34.16316 -32.30240 -31.77426 -31.68452 -28.63717 -27.75698 -25.24355 -24.97983 -23.76698 -22.85927 -21.31120 -20.37631 -19.52994 -18.69284 -17.90061 -17.40151 -16.82380 -16.66238 -16.56655 -16.50290 -16.13654 -15.48588 -15.01249 -14.71815 -14.48411 -14.41473 -14.25057 -13.78860 -13.40702 -13.36769 -13.14929 -12.82438 -12.78967 -12.75362 -12.52470 -12.42863 -12.22997 -12.17794 -12.04407 -11.95553 -11.36859 -11.12319 -11.03549 -10.76448 -10.52861 -10.08064 -10.01856 -9.88083 -9.78132 -9.64639 -9.63410 -9.29736 -8.60569 -6.10868 -4.10222 -0.18328 0.12117 0.46217 2.12998 2.45522 2.57175 3.11949 3.27215 3.30071 3.35009 3.37960 3.78114 4.19256 4.25388 4.27606 4.39511 4.50851 4.61042 4.70512 4.83499 4.90674 5.03862 5.04458 5.22241 5.23309 5.24596 5.30336 5.37245 5.37332 5.37697 5.40667 5.67166 5.67794 5.78334 5.91831 6.13944 6.22771 6.31399 6.54410 6.71707 7.14945 7.26696 7.63494 7.71435 8.45200 8.92941 9.50468 11.02186 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.025591 B = 0.001942 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.891611 B =14414.496295 C =14949.961991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.089 3.911 2 N -1.006 6.006 3 C 0.089 3.911 4 S 2.697 3.303 5 O -0.947 6.947 6 O -0.951 6.951 7 C -0.693 4.693 8 C 0.007 3.993 9 C -0.149 4.149 10 C -0.006 4.006 11 C -0.138 4.138 12 C 0.504 3.496 13 O -0.503 6.503 14 O -0.351 6.351 15 C 0.066 3.934 16 C -0.101 4.101 17 C -0.011 4.011 18 C -0.523 4.523 19 H 0.074 0.926 20 C 0.067 3.933 21 N -0.901 5.901 22 Si 0.880 3.120 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.265 1.265 26 C 0.040 3.960 27 H 0.083 0.917 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.074 0.926 32 H 0.076 0.924 33 H 0.147 0.853 34 H 0.145 0.855 35 H 0.152 0.848 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.019 0.981 41 H 0.015 0.985 42 H 0.264 0.736 43 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.643 3.065 25.108 33.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 N -0.845 5.845 3 C -0.056 4.056 4 S 2.785 3.215 5 O -0.937 6.937 6 O -0.941 6.941 7 C -0.779 4.779 8 C -0.012 4.012 9 C -0.168 4.168 10 C -0.025 4.025 11 C -0.140 4.140 12 C 0.348 3.652 13 O -0.392 6.392 14 O -0.267 6.267 15 C -0.006 4.006 16 C -0.139 4.139 17 C -0.048 4.048 18 C -0.560 4.560 19 H 0.092 0.908 20 C -0.134 4.134 21 N -0.539 5.539 22 Si 0.707 3.293 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.190 1.190 26 C 0.020 3.980 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.093 0.907 32 H 0.095 0.905 33 H 0.164 0.836 34 H 0.162 0.838 35 H 0.170 0.830 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.038 0.962 41 H 0.033 0.967 42 H 0.074 0.926 43 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -21.001 2.849 25.784 33.377 hybrid contribution 0.928 0.673 -0.729 1.358 sum -20.073 3.522 25.055 32.297 Atomic orbital electron populations 1.21601 0.77736 1.04069 1.02255 1.57361 1.15561 1.21737 1.89882 1.21621 0.96502 0.84680 1.02763 1.02041 0.73279 0.72406 0.73731 1.93619 1.39877 1.84261 1.75958 1.93585 1.66079 1.58428 1.76004 1.31048 1.04305 1.15189 1.27337 1.21196 0.96142 0.89625 0.94240 1.21370 0.98609 1.02053 0.94750 1.21959 0.90749 0.89175 1.00581 1.19333 0.95336 1.04645 0.94666 1.20953 0.85547 0.77528 0.81211 1.90849 1.44816 1.35855 1.67725 1.86525 1.45212 1.70246 1.24726 1.23588 0.82707 0.99553 0.94797 1.21576 1.01268 1.01562 0.89486 1.19522 0.92031 0.96599 0.96649 1.21034 1.07524 1.33439 0.94052 0.90804 1.25022 0.98108 0.95596 0.94719 1.69904 1.31528 1.45891 1.06596 0.86776 0.82572 0.81048 0.78895 1.20179 1.21257 1.18984 1.21014 0.93439 0.91422 0.92097 0.89812 0.91170 0.92114 0.91823 0.90711 0.90529 0.83579 0.83772 0.83008 0.91253 0.91221 0.91463 0.91454 0.96240 0.96656 0.92609 0.82807 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.35 10.30 59.85 0.62 0.96 16 2 N -1.01 -6.25 3.58 -129.19 -0.46 -6.71 16 3 C 0.09 0.45 10.26 59.85 0.61 1.07 16 4 S 2.70 24.28 5.65 -107.50 -0.61 23.67 16 5 O -0.95 -11.35 16.35 -57.17 -0.93 -12.28 16 6 O -0.95 -10.10 16.43 -57.17 -0.94 -11.04 16 7 C -0.69 -6.23 5.97 -39.64 -0.24 -6.47 16 8 C 0.01 0.05 9.52 -39.49 -0.38 -0.32 16 9 C -0.15 -1.05 10.03 -39.64 -0.40 -1.45 16 10 C -0.01 -0.06 9.62 -39.17 -0.38 -0.43 16 11 C -0.14 -1.61 5.87 -104.98 -0.62 -2.23 16 12 C 0.50 7.42 7.90 34.61 0.27 7.70 16 13 O -0.50 -8.61 16.14 -19.24 -0.31 -8.92 16 14 O -0.35 -5.38 9.47 -40.53 -0.38 -5.76 16 15 C 0.07 1.11 5.48 37.16 0.20 1.32 16 16 C -0.10 -1.94 5.53 -26.73 -0.15 -2.09 16 17 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 18 C -0.52 -14.63 9.66 -34.44 -0.33 -14.97 16 19 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 20 C 0.07 1.94 5.47 -17.82 -0.10 1.84 16 21 N -0.90 -27.45 13.96 55.43 0.77 -26.67 16 22 Si 0.88 21.48 27.47 -169.99 -4.67 16.81 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 H -0.27 -6.21 6.54 56.52 0.37 -5.84 16 26 C 0.04 0.43 9.07 -39.17 -0.36 0.07 16 27 H 0.08 0.17 7.79 -51.93 -0.40 -0.24 16 28 H 0.07 0.28 8.01 -51.93 -0.42 -0.14 16 29 H 0.06 0.17 8.14 -51.93 -0.42 -0.25 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.14 16 31 H 0.07 0.41 7.79 -51.93 -0.40 0.00 16 32 H 0.08 0.23 7.92 -51.93 -0.41 -0.18 16 33 H 0.15 0.74 7.60 -52.49 -0.40 0.34 16 34 H 0.14 0.60 8.06 -52.49 -0.42 0.18 16 35 H 0.15 1.24 7.61 -52.49 -0.40 0.84 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.72 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.02 0.45 7.20 -51.93 -0.37 0.07 16 41 H 0.02 0.35 7.57 -51.93 -0.39 -0.05 16 42 H 0.26 7.52 8.31 -40.82 -0.34 7.18 16 43 H 0.15 1.67 7.20 -52.48 -0.38 1.30 16 LS Contribution 380.40 15.07 5.73 5.73 Total: -1.00 -35.99 380.40 -9.27 -45.26 By element: Atomic # 1 Polarization: 1.40 SS G_CDS: -6.12 Total: -4.73 kcal Atomic # 6 Polarization: -14.01 SS G_CDS: -1.34 Total: -15.35 kcal Atomic # 7 Polarization: -33.70 SS G_CDS: 0.31 Total: -33.39 kcal Atomic # 8 Polarization: -35.44 SS G_CDS: -2.57 Total: -38.01 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -4.67 Total: 16.81 kcal Atomic # 16 Polarization: 24.28 SS G_CDS: -0.61 Total: 23.67 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -35.99 -9.27 -45.26 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025394242.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.566 kcal (2) G-P(sol) polarization free energy of solvation -35.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.824 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds