Wall clock time and date at job start Sat Apr 11 2020 06:16:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46510 * 119.99910 * 2 1 4 4 S 1.65594 * 120.00527 * 179.97438 * 2 1 3 5 5 O 1.42099 * 106.40682 * 203.53922 * 4 2 1 6 6 O 1.42109 * 106.39756 * 336.46087 * 4 2 1 7 7 C 1.76204 * 107.22029 * 89.99701 * 4 2 1 8 8 C 1.38390 * 119.92430 * 269.73610 * 7 4 2 9 9 C 1.38346 * 120.29960 * 179.72233 * 8 7 4 10 10 C 1.37970 * 120.14991 * 0.54568 * 9 8 7 11 11 C 1.39606 * 119.84604 * 359.72585 * 10 9 8 12 12 C 1.47728 * 120.14967 * 180.02562 * 11 10 9 13 13 O 1.21464 * 120.00404 * 179.97438 * 12 11 10 14 14 O 1.34714 * 119.99538 * 359.97438 * 12 11 10 15 15 C 1.45208 * 116.99560 * 179.97438 * 14 12 11 16 16 C 1.52999 * 109.47007 * 180.02562 * 15 14 12 17 17 C 1.53001 * 109.47196 * 180.02562 * 16 15 14 18 18 C 1.50699 * 109.46939 * 179.97438 * 17 16 15 19 19 H 1.07998 * 120.00182 * 359.97438 * 18 17 16 20 20 C 1.37882 * 119.99581 * 180.02562 * 18 17 16 21 21 N 1.31515 * 119.99793 * 180.02562 * 20 18 17 22 22 Si 1.86793 * 120.00274 * 359.97438 * 20 18 17 23 23 H 1.48502 * 109.47111 * 89.99969 * 22 20 18 24 24 H 1.48494 * 109.47455 * 210.00545 * 22 20 18 25 25 H 1.48502 * 109.47280 * 330.00568 * 22 20 18 26 26 C 1.37925 * 119.92249 * 90.00099 * 7 4 2 27 27 H 1.09002 * 109.47391 * 359.97438 * 1 2 3 28 28 H 1.09001 * 109.46813 * 240.00026 * 1 2 3 29 29 H 1.09004 * 109.47041 * 120.00153 * 1 2 3 30 30 H 1.08999 * 109.47096 * 89.99783 * 3 2 1 31 31 H 1.09001 * 109.46763 * 210.00177 * 3 2 1 32 32 H 1.09005 * 109.46576 * 330.00159 * 3 2 1 33 33 H 1.07995 * 119.85178 * 359.97438 * 8 7 4 34 34 H 1.08001 * 119.92467 * 180.25067 * 9 8 7 35 35 H 1.08002 * 120.07525 * 179.74457 * 10 9 8 36 36 H 1.08998 * 109.46786 * 299.99694 * 15 14 12 37 37 H 1.08995 * 109.46919 * 60.00090 * 15 14 12 38 38 H 1.09002 * 109.46746 * 300.00134 * 16 15 14 39 39 H 1.09002 * 109.47062 * 59.99562 * 16 15 14 40 40 H 1.09001 * 109.46927 * 300.00038 * 17 16 15 41 41 H 1.08995 * 109.46849 * 59.99864 * 17 16 15 42 42 H 0.96996 * 119.99952 * 180.02562 * 21 20 18 43 43 H 1.08003 * 120.07224 * 359.97438 * 26 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 16 2.2931 -1.4340 0.0006 5 8 3.5760 -1.1564 0.5449 6 8 1.4114 -2.4062 0.5455 7 6 2.5539 -1.8865 -1.6822 8 6 1.6200 -2.6682 -2.3396 9 6 1.8142 -3.0233 -3.6625 10 6 2.9471 -2.6090 -4.3322 11 6 3.8959 -1.8250 -3.6733 12 6 5.1111 -1.3772 -4.3840 13 8 5.9347 -0.6948 -3.8084 14 8 5.3059 -1.7258 -5.6706 15 6 6.5218 -1.2498 -6.3057 16 6 6.5672 -1.7420 -7.7537 17 6 7.8488 -1.2410 -8.4227 18 6 7.8937 -1.7263 -9.8487 19 1 7.0890 -2.3318 -10.2387 20 6 8.9628 -1.3980 -10.6552 21 7 9.0018 -1.8211 -11.8998 22 14 10.3550 -0.3513 -9.9805 23 1 11.3929 -1.2315 -9.3861 24 1 10.9532 0.4460 -11.0812 25 1 9.8257 0.5639 -8.9376 26 6 3.6909 -1.4655 -2.3396 27 1 -0.3634 1.0277 0.0005 28 1 -0.3633 -0.5138 0.8900 29 1 -0.3633 -0.5139 -0.8900 30 1 2.3791 1.5835 1.0277 31 1 3.1499 1.1384 -0.5139 32 1 1.6083 2.0284 -0.5138 33 1 0.7338 -2.9991 -1.8187 34 1 1.0795 -3.6302 -4.1709 35 1 3.0994 -2.8904 -5.3637 36 1 6.5361 -0.1600 -6.2922 37 1 7.3876 -1.6314 -5.7646 38 1 6.5526 -2.8318 -7.7676 39 1 5.7013 -1.3601 -8.2945 40 1 7.8638 -0.1512 -8.4087 41 1 8.7143 -1.6232 -7.8817 42 1 9.7541 -1.5905 -12.4671 43 1 4.4207 -0.8587 -1.8242 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000025394242.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:16:13 Heat of formation + Delta-G solvation = -157.934351 kcal Electronic energy + Delta-G solvation = -26523.576919 eV Core-core repulsion = 22467.134133 eV Total energy + Delta-G solvation = -4056.442786 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -41.79259 -40.01352 -38.51928 -37.89022 -37.16910 -37.01370 -35.97074 -33.95182 -32.85200 -32.44115 -29.50348 -28.97466 -26.11858 -25.67571 -24.66933 -24.18919 -22.31008 -22.05242 -20.35474 -19.46540 -19.04781 -18.52915 -18.32879 -17.76935 -17.33140 -17.26808 -17.10963 -16.34816 -16.10862 -15.82658 -15.47353 -15.33098 -15.10310 -14.82925 -14.64633 -14.42747 -14.17611 -13.84479 -13.79475 -13.53354 -13.48737 -13.41553 -13.29116 -12.94367 -12.89049 -12.67589 -12.63057 -12.55364 -12.19488 -12.08000 -12.04423 -11.78916 -11.60627 -11.44332 -11.37769 -10.78656 -10.71598 -10.35295 -10.08969 -8.31321 -6.36155 -0.84958 -0.63820 -0.27854 1.21546 1.36203 1.37308 1.41904 1.49063 1.83915 2.34475 2.35128 2.61251 3.03865 3.08276 3.36427 3.60027 3.80542 3.82556 3.89486 3.96721 3.97840 4.11422 4.25509 4.34930 4.47942 4.57816 4.59699 4.65496 4.71356 4.74350 4.79545 4.93375 4.94701 4.98610 4.99436 5.03120 5.03978 5.21541 5.43959 5.46918 5.50363 5.52405 5.60693 6.24238 6.49170 6.71642 7.28296 8.85003 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.025591 B = 0.001942 C = 0.001872 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.891611 B =14414.496295 C =14949.961991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -1.001 6.001 3 C 0.080 3.920 4 S 2.709 3.291 5 O -0.984 6.984 6 O -0.968 6.968 7 C -0.693 4.693 8 C 0.014 3.986 9 C -0.137 4.137 10 C -0.008 4.008 11 C -0.159 4.159 12 C 0.504 3.496 13 O -0.534 6.534 14 O -0.349 6.349 15 C 0.074 3.926 16 C -0.091 4.091 17 C -0.010 4.010 18 C -0.533 4.533 19 H 0.037 0.963 20 C 0.005 3.995 21 N -0.948 5.948 22 Si 0.949 3.051 23 H -0.267 1.267 24 H -0.283 1.283 25 H -0.246 1.246 26 C 0.028 3.972 27 H 0.106 0.894 28 H 0.068 0.932 29 H 0.075 0.925 30 H 0.067 0.933 31 H 0.065 0.935 32 H 0.101 0.899 33 H 0.175 0.825 34 H 0.182 0.818 35 H 0.161 0.839 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.066 0.934 40 H 0.026 0.974 41 H 0.023 0.977 42 H 0.267 0.733 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.360 3.593 26.513 35.518 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.842 5.842 3 C -0.065 4.065 4 S 2.799 3.201 5 O -0.974 6.974 6 O -0.958 6.958 7 C -0.779 4.779 8 C -0.005 4.005 9 C -0.155 4.155 10 C -0.026 4.026 11 C -0.161 4.161 12 C 0.350 3.650 13 O -0.426 6.426 14 O -0.265 6.265 15 C 0.001 3.999 16 C -0.129 4.129 17 C -0.048 4.048 18 C -0.571 4.571 19 H 0.055 0.945 20 C -0.192 4.192 21 N -0.589 5.589 22 Si 0.772 3.228 23 H -0.192 1.192 24 H -0.209 1.209 25 H -0.170 1.170 26 C 0.009 3.991 27 H 0.125 0.875 28 H 0.087 0.913 29 H 0.094 0.906 30 H 0.086 0.914 31 H 0.084 0.916 32 H 0.120 0.880 33 H 0.193 0.807 34 H 0.200 0.800 35 H 0.179 0.821 36 H 0.092 0.908 37 H 0.090 0.910 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.044 0.956 41 H 0.042 0.958 42 H 0.076 0.924 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -22.745 3.368 27.213 35.626 hybrid contribution 1.284 0.456 -1.166 1.793 sum -21.461 3.824 26.047 33.965 Atomic orbital electron populations 1.21902 0.76037 1.05885 1.02972 1.57180 1.16549 1.20903 1.89616 1.21817 0.96633 0.84679 1.03363 1.01448 0.72444 0.72690 0.73540 1.93569 1.41988 1.84916 1.76967 1.93554 1.66163 1.59596 1.76499 1.31035 1.04147 1.15619 1.27112 1.21655 0.96317 0.88020 0.94511 1.21778 0.98166 1.01113 0.94454 1.22153 0.90836 0.88526 1.01076 1.19240 0.95070 1.06849 0.94982 1.21511 0.86143 0.76720 0.80584 1.90827 1.46163 1.37469 1.68113 1.86503 1.44368 1.70271 1.25361 1.23284 0.83549 0.99674 0.93410 1.21321 0.99320 1.01335 0.90878 1.19457 0.94368 0.96856 0.94100 1.21386 1.06417 1.32694 0.96569 0.94453 1.25998 1.01196 0.97139 0.94916 1.70054 1.32788 1.47783 1.08249 0.85678 0.78957 0.79493 0.78663 1.19212 1.20909 1.16953 1.20962 0.94133 0.92004 0.92011 0.87510 0.91347 0.90618 0.91430 0.91646 0.88003 0.80716 0.80027 0.82146 0.90836 0.91022 0.91648 0.91479 0.95582 0.95832 0.92407 0.83978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.41 10.30 127.77 1.32 1.72 16 2 N -1.00 -10.96 3.58 -562.65 -2.02 -12.97 16 3 C 0.08 0.72 10.26 127.77 1.31 2.03 16 4 S 2.71 46.82 5.65 -56.49 -0.32 46.50 16 5 O -0.98 -24.15 16.35 -128.00 -2.09 -26.24 16 6 O -0.97 -19.31 16.43 -128.00 -2.10 -21.41 16 7 C -0.69 -11.54 5.97 22.23 0.13 -11.41 16 8 C 0.01 0.16 9.52 22.33 0.21 0.37 16 9 C -0.14 -1.44 10.03 22.23 0.22 -1.22 16 10 C -0.01 -0.13 9.62 22.54 0.22 0.09 16 11 C -0.16 -3.62 5.87 -20.10 -0.12 -3.74 16 12 C 0.50 14.80 7.90 70.33 0.56 15.36 16 13 O -0.53 -18.55 16.14 19.95 0.32 -18.23 16 14 O -0.35 -10.45 9.47 -56.24 -0.53 -10.98 16 15 C 0.07 2.42 5.48 71.98 0.39 2.81 16 16 C -0.09 -3.43 5.53 30.59 0.17 -3.26 16 17 C -0.01 -0.47 4.04 29.85 0.12 -0.35 16 18 C -0.53 -30.25 9.66 25.60 0.25 -30.00 16 19 H 0.04 2.32 7.99 -2.91 -0.02 2.29 16 20 C 0.00 0.27 5.47 84.66 0.46 0.73 16 21 N -0.95 -58.99 13.96 21.45 0.30 -58.69 16 22 Si 0.95 43.83 27.47 68.60 1.88 45.72 16 23 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 24 H -0.28 -12.86 7.11 99.48 0.71 -12.15 16 25 H -0.25 -10.52 6.54 99.48 0.65 -9.87 16 26 C 0.03 0.61 9.07 22.54 0.20 0.81 16 27 H 0.11 0.09 7.79 -2.39 -0.02 0.08 16 28 H 0.07 0.41 8.01 -2.39 -0.02 0.39 16 29 H 0.08 0.19 8.14 -2.38 -0.02 0.17 16 30 H 0.07 0.55 8.14 -2.39 -0.02 0.53 16 31 H 0.06 0.72 7.79 -2.39 -0.02 0.70 16 32 H 0.10 0.39 7.92 -2.38 -0.02 0.37 16 33 H 0.18 1.04 7.60 -2.91 -0.02 1.02 16 34 H 0.18 0.58 8.06 -2.91 -0.02 0.56 16 35 H 0.16 2.28 7.61 -2.91 -0.02 2.26 16 36 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 37 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 39 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 40 H 0.03 1.15 7.20 -2.39 -0.02 1.14 16 41 H 0.02 1.03 7.57 -2.39 -0.02 1.02 16 42 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 43 H 0.14 3.29 7.20 -2.91 -0.02 3.27 16 Total: -1.00 -79.36 380.40 1.85 -77.51 By element: Atomic # 1 Polarization: 3.88 SS G_CDS: 0.96 Total: 4.83 kcal Atomic # 6 Polarization: -31.49 SS G_CDS: 5.45 Total: -26.04 kcal Atomic # 7 Polarization: -69.94 SS G_CDS: -1.72 Total: -71.66 kcal Atomic # 8 Polarization: -72.45 SS G_CDS: -4.41 Total: -76.86 kcal Atomic # 14 Polarization: 43.83 SS G_CDS: 1.88 Total: 45.72 kcal Atomic # 16 Polarization: 46.82 SS G_CDS: -0.32 Total: 46.50 kcal Total: -79.36 1.85 -77.51 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000025394242.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.424 kcal (2) G-P(sol) polarization free energy of solvation -79.356 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.779 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds