Wall clock time and date at job start Sat Apr 11 2020 06:17:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.46878 * 2 1 4 4 S 1.65605 * 119.99934 * 164.99999 * 3 2 1 5 5 O 1.42102 * 106.39910 * 311.46067 * 4 3 2 6 6 O 1.42101 * 106.40166 * 178.54234 * 4 3 2 7 7 C 1.76196 * 107.21754 * 65.00075 * 4 3 2 8 8 C 1.38395 * 119.92626 * 270.25070 * 7 4 3 9 9 C 1.38342 * 120.30516 * 180.30066 * 8 7 4 10 10 C 1.37974 * 120.14875 * 359.44610 * 9 8 7 11 11 C 1.39608 * 119.84372 * 0.27850 * 10 9 8 12 12 C 1.47731 * 120.14574 * 179.97438 * 11 10 9 13 13 O 1.21470 * 119.99879 * 179.97438 * 12 11 10 14 14 O 1.34713 * 119.99818 * 359.97438 * 12 11 10 15 15 C 1.45197 * 116.99587 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.47145 * 179.97438 * 15 14 12 17 17 C 1.52999 * 109.47316 * 179.97438 * 16 15 14 18 18 C 1.50705 * 109.47010 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00193 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99868 * 180.02562 * 18 17 16 21 21 N 1.31510 * 120.00202 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99856 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47192 * 90.00376 * 22 20 18 24 24 H 1.48503 * 109.46868 * 209.99837 * 22 20 18 25 25 H 1.48497 * 109.47516 * 330.00070 * 22 20 18 26 26 C 1.37925 * 119.92608 * 90.00088 * 7 4 3 27 27 H 1.09003 * 109.47182 * 300.00079 * 1 2 3 28 28 H 1.09001 * 109.46837 * 60.00219 * 1 2 3 29 29 H 1.08998 * 109.47090 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47089 * 240.00408 * 2 1 3 31 31 H 1.08995 * 109.47211 * 120.00001 * 2 1 3 32 32 H 0.96998 * 120.00630 * 344.99808 * 3 2 1 33 33 H 1.08000 * 119.84625 * 0.02950 * 8 7 4 34 34 H 1.08002 * 119.92904 * 179.72812 * 9 8 7 35 35 H 1.07999 * 120.07593 * 180.25535 * 10 9 8 36 36 H 1.09006 * 109.47496 * 300.00229 * 15 14 12 37 37 H 1.09003 * 109.47152 * 60.00102 * 15 14 12 38 38 H 1.08998 * 109.47421 * 300.00837 * 16 15 14 39 39 H 1.09003 * 109.46858 * 60.00110 * 16 15 14 40 40 H 1.08992 * 109.47484 * 300.00432 * 17 16 15 41 41 H 1.08997 * 109.46733 * 60.00718 * 17 16 15 42 42 H 0.97000 * 120.00508 * 179.97438 * 21 20 18 43 43 H 1.07997 * 120.07375 * 0.02562 * 26 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 16 3.6004 1.7002 0.3712 5 8 3.8848 0.9833 1.5647 6 8 3.7650 3.1065 0.2513 7 6 4.5894 0.9738 -0.8932 8 6 5.0301 -0.3314 -0.7608 9 6 5.8122 -0.9074 -1.7459 10 6 6.1486 -0.1868 -2.8734 11 6 5.7026 1.1284 -3.0160 12 6 6.0593 1.9063 -4.2203 13 8 5.6695 3.0503 -4.3418 14 8 6.8170 1.3468 -5.1835 15 6 7.1278 2.1697 -6.3387 16 6 7.9906 1.3701 -7.3170 17 6 8.3177 2.2369 -8.5346 18 6 9.1671 1.4491 -9.4985 19 1 9.4454 0.4318 -9.2662 20 6 9.5888 2.0272 -10.6771 21 7 10.3296 1.3396 -11.5185 22 14 9.1068 3.7865 -11.0794 23 1 10.1346 4.7158 -10.5454 24 1 9.0102 3.9488 -12.5524 25 1 7.7924 4.0936 -10.4603 26 6 4.9183 1.7056 -2.0151 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.4150 2.1090 -0.2174 33 1 4.7659 -0.9014 0.1176 34 1 6.1565 -1.9250 -1.6342 35 1 6.7558 -0.6390 -3.6436 36 1 6.2025 2.4694 -6.8309 37 1 7.6721 3.0574 -6.0166 38 1 8.9158 1.0707 -6.8246 39 1 7.4467 0.4821 -7.6392 40 1 7.3924 2.5360 -9.0269 41 1 8.8615 3.1251 -8.2128 42 1 10.6260 1.7461 -12.3479 43 1 4.5707 2.7228 -2.1189 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000030757860.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:21 Heat of formation + Delta-G solvation = -147.192781 kcal Electronic energy + Delta-G solvation = -26275.847625 eV Core-core repulsion = 22219.870628 eV Total energy + Delta-G solvation = -4055.976997 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.71357 -39.17514 -37.71779 -36.62092 -36.43118 -36.28888 -34.16192 -32.30796 -31.77665 -31.68535 -30.29115 -27.75778 -24.99595 -23.86585 -23.44582 -22.84802 -21.32868 -20.39641 -19.97441 -18.79566 -17.91319 -17.40301 -16.81755 -16.76392 -16.56283 -16.50003 -16.10251 -15.63698 -15.28772 -14.89891 -14.49963 -14.41257 -14.24933 -13.74606 -13.40515 -13.39373 -12.83185 -12.78453 -12.57023 -12.54321 -12.48881 -12.42266 -12.25643 -12.18550 -12.01070 -11.95277 -11.35495 -11.12208 -11.03404 -10.76173 -10.52632 -10.13841 -10.07625 -9.98418 -9.88018 -9.77832 -9.63820 -9.29612 -8.60531 -6.10770 -4.10153 -0.14478 0.11431 0.46282 2.13873 2.49791 2.59481 3.10229 3.27288 3.31968 3.35089 3.38099 3.84539 4.25066 4.27642 4.33095 4.39586 4.51211 4.52887 4.60050 4.70057 4.83006 4.96398 5.03444 5.22360 5.25320 5.32254 5.36992 5.37737 5.39048 5.41110 5.58010 5.67063 5.67410 5.78524 6.13484 6.22875 6.31535 6.38991 6.54649 6.71871 7.15086 7.26841 7.63746 7.71580 8.45238 8.92982 9.50579 11.02263 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.023859 B = 0.001877 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.264426 B =14910.508438 C =15146.621228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.109 3.891 3 N -1.117 6.117 4 S 2.699 3.301 5 O -0.953 6.953 6 O -0.952 6.952 7 C -0.692 4.692 8 C 0.006 3.994 9 C -0.149 4.149 10 C -0.006 4.006 11 C -0.138 4.138 12 C 0.503 3.497 13 O -0.503 6.503 14 O -0.351 6.351 15 C 0.066 3.934 16 C -0.101 4.101 17 C -0.011 4.011 18 C -0.523 4.523 19 H 0.074 0.926 20 C 0.067 3.933 21 N -0.901 5.901 22 Si 0.880 3.120 23 H -0.276 1.276 24 H -0.287 1.287 25 H -0.265 1.265 26 C 0.042 3.958 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.082 0.918 32 H 0.420 0.580 33 H 0.147 0.853 34 H 0.145 0.855 35 H 0.152 0.848 36 H 0.069 0.931 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.067 0.933 40 H 0.019 0.981 41 H 0.015 0.985 42 H 0.264 0.736 43 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.471 -5.874 26.888 33.713 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.017 4.017 3 N -0.879 5.879 4 S 2.787 3.213 5 O -0.943 6.943 6 O -0.942 6.942 7 C -0.778 4.778 8 C -0.014 4.014 9 C -0.168 4.168 10 C -0.024 4.024 11 C -0.140 4.140 12 C 0.347 3.653 13 O -0.392 6.392 14 O -0.267 6.267 15 C -0.007 4.007 16 C -0.139 4.139 17 C -0.048 4.048 18 C -0.561 4.561 19 H 0.092 0.908 20 C -0.134 4.134 21 N -0.539 5.539 22 Si 0.707 3.293 23 H -0.202 1.202 24 H -0.213 1.213 25 H -0.190 1.190 26 C 0.023 3.977 27 H 0.084 0.916 28 H 0.082 0.918 29 H 0.092 0.908 30 H 0.085 0.915 31 H 0.100 0.900 32 H 0.256 0.744 33 H 0.165 0.835 34 H 0.162 0.838 35 H 0.170 0.830 36 H 0.087 0.913 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.085 0.915 40 H 0.038 0.962 41 H 0.033 0.967 42 H 0.074 0.926 43 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -19.044 -5.228 27.379 33.758 hybrid contribution -0.184 0.935 -1.316 1.625 sum -19.228 -4.293 26.063 32.671 Atomic orbital electron populations 1.21962 0.93778 1.03221 1.02965 1.21329 0.96821 0.81250 1.02305 1.55580 1.28604 1.15092 1.88592 1.01823 0.72373 0.73331 0.73737 1.93597 1.83904 1.74636 1.42177 1.93634 1.85074 1.28787 1.86717 1.30953 1.22190 1.06654 1.18048 1.21216 0.90749 0.91876 0.97515 1.21365 1.00012 1.01336 0.94076 1.21965 0.91947 0.91913 0.96578 1.19335 1.04527 0.95497 0.94640 1.20959 0.76101 0.85144 0.83072 1.90854 1.51482 1.18270 1.78610 1.86522 1.63411 1.46762 1.30013 1.23588 1.00390 0.93967 0.82707 1.21574 0.98246 0.99343 0.94722 1.19523 0.97040 0.95606 0.92647 1.21035 1.31415 1.01101 1.02501 0.90800 1.25018 0.94503 0.97859 0.96042 1.69901 1.36056 1.37237 1.10723 0.86781 0.79704 0.85310 0.77521 1.20179 1.21255 1.18990 1.21015 0.89030 0.99149 0.88527 0.91648 0.91750 0.90785 0.91550 0.90011 0.74435 0.83546 0.83767 0.83013 0.91251 0.91232 0.91455 0.91458 0.96238 0.96652 0.92607 0.82718 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.43 10.05 37.16 0.37 -0.06 16 2 C 0.11 0.41 6.94 -4.04 -0.03 0.38 16 3 N -1.12 -5.78 6.00 -10.61 -0.06 -5.85 16 4 S 2.70 22.46 5.73 -107.50 -0.62 21.84 16 5 O -0.95 -9.79 16.75 -57.17 -0.96 -10.74 16 6 O -0.95 -11.07 17.27 -57.17 -0.99 -12.06 16 7 C -0.69 -5.94 5.94 -39.64 -0.24 -6.17 16 8 C 0.01 0.04 9.52 -39.49 -0.38 -0.34 16 9 C -0.15 -1.01 10.03 -39.64 -0.40 -1.41 16 10 C -0.01 -0.05 9.62 -39.17 -0.38 -0.43 16 11 C -0.14 -1.60 5.87 -104.98 -0.62 -2.21 16 12 C 0.50 7.42 7.90 34.61 0.27 7.70 16 13 O -0.50 -8.67 16.14 -19.24 -0.31 -8.98 16 14 O -0.35 -5.37 9.47 -40.53 -0.38 -5.76 16 15 C 0.07 1.12 5.47 37.16 0.20 1.32 16 16 C -0.10 -1.94 5.53 -26.73 -0.15 -2.09 16 17 C -0.01 -0.25 4.04 -27.88 -0.11 -0.36 16 18 C -0.52 -14.64 9.66 -34.44 -0.33 -14.97 16 19 H 0.07 2.21 7.99 -52.49 -0.42 1.79 16 20 C 0.07 1.94 5.47 -17.82 -0.10 1.85 16 21 N -0.90 -27.45 13.96 55.43 0.77 -26.68 16 22 Si 0.88 21.50 27.47 -169.99 -4.67 16.83 16 23 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 24 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 25 H -0.27 -6.23 6.54 56.52 0.37 -5.86 16 26 C 0.04 0.45 9.07 -39.17 -0.36 0.09 16 27 H 0.06 0.18 8.14 -51.93 -0.42 -0.25 16 28 H 0.06 0.17 8.14 -51.93 -0.42 -0.26 16 29 H 0.07 0.13 8.14 -51.93 -0.42 -0.29 16 30 H 0.07 0.19 8.14 -51.93 -0.42 -0.23 16 31 H 0.08 0.29 7.75 -51.93 -0.40 -0.12 16 32 H 0.42 1.55 8.65 -34.47 -0.30 1.25 16 33 H 0.15 0.67 7.61 -52.49 -0.40 0.27 16 34 H 0.14 0.56 8.06 -52.49 -0.42 0.14 16 35 H 0.15 1.22 7.61 -52.49 -0.40 0.82 16 36 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 37 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 38 H 0.07 1.28 8.14 -51.93 -0.42 0.85 16 39 H 0.07 1.27 8.14 -51.93 -0.42 0.85 16 40 H 0.02 0.45 7.20 -51.93 -0.37 0.08 16 41 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 42 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 43 H 0.16 1.69 7.20 -52.49 -0.38 1.31 16 LS Contribution 381.75 15.07 5.75 5.75 Total: -1.00 -36.43 381.75 -9.72 -46.15 By element: Atomic # 1 Polarization: 2.22 SS G_CDS: -6.03 Total: -3.82 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: -2.23 Total: -16.69 kcal Atomic # 7 Polarization: -33.23 SS G_CDS: 0.71 Total: -32.52 kcal Atomic # 8 Polarization: -34.90 SS G_CDS: -2.64 Total: -37.54 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -4.67 Total: 16.83 kcal Atomic # 16 Polarization: 22.46 SS G_CDS: -0.62 Total: 21.84 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.43 -9.72 -46.15 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000030757860.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.043 kcal (2) G-P(sol) polarization free energy of solvation -36.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -137.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.723 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.150 kcal (6) G-S(sol) free energy of system = (1) + (5) -147.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds