Wall clock time and date at job start Sat Apr 11 2020 06:17:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46502 * 109.46878 * 2 1 4 4 S 1.65605 * 119.99934 * 164.99999 * 3 2 1 5 5 O 1.42102 * 106.39910 * 311.46067 * 4 3 2 6 6 O 1.42101 * 106.40166 * 178.54234 * 4 3 2 7 7 C 1.76196 * 107.21754 * 65.00075 * 4 3 2 8 8 C 1.38395 * 119.92626 * 270.25070 * 7 4 3 9 9 C 1.38342 * 120.30516 * 180.30066 * 8 7 4 10 10 C 1.37974 * 120.14875 * 359.44610 * 9 8 7 11 11 C 1.39608 * 119.84372 * 0.27850 * 10 9 8 12 12 C 1.47731 * 120.14574 * 179.97438 * 11 10 9 13 13 O 1.21470 * 119.99879 * 179.97438 * 12 11 10 14 14 O 1.34713 * 119.99818 * 359.97438 * 12 11 10 15 15 C 1.45197 * 116.99587 * 179.97438 * 14 12 11 16 16 C 1.53001 * 109.47145 * 179.97438 * 15 14 12 17 17 C 1.52999 * 109.47316 * 179.97438 * 16 15 14 18 18 C 1.50705 * 109.47010 * 180.02562 * 17 16 15 19 19 H 1.08000 * 120.00193 * 0.02562 * 18 17 16 20 20 C 1.37877 * 119.99868 * 180.02562 * 18 17 16 21 21 N 1.31510 * 120.00202 * 180.02562 * 20 18 17 22 22 Si 1.86801 * 119.99856 * 359.97438 * 20 18 17 23 23 H 1.48499 * 109.47192 * 90.00376 * 22 20 18 24 24 H 1.48503 * 109.46868 * 209.99837 * 22 20 18 25 25 H 1.48497 * 109.47516 * 330.00070 * 22 20 18 26 26 C 1.37925 * 119.92608 * 90.00088 * 7 4 3 27 27 H 1.09003 * 109.47182 * 300.00079 * 1 2 3 28 28 H 1.09001 * 109.46837 * 60.00219 * 1 2 3 29 29 H 1.08998 * 109.47090 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47089 * 240.00408 * 2 1 3 31 31 H 1.08995 * 109.47211 * 120.00001 * 2 1 3 32 32 H 0.96998 * 120.00630 * 344.99808 * 3 2 1 33 33 H 1.08000 * 119.84625 * 0.02950 * 8 7 4 34 34 H 1.08002 * 119.92904 * 179.72812 * 9 8 7 35 35 H 1.07999 * 120.07593 * 180.25535 * 10 9 8 36 36 H 1.09006 * 109.47496 * 300.00229 * 15 14 12 37 37 H 1.09003 * 109.47152 * 60.00102 * 15 14 12 38 38 H 1.08998 * 109.47421 * 300.00837 * 16 15 14 39 39 H 1.09003 * 109.46858 * 60.00110 * 16 15 14 40 40 H 1.08992 * 109.47484 * 300.00432 * 17 16 15 41 41 H 1.08997 * 109.46733 * 60.00718 * 17 16 15 42 42 H 0.97000 * 120.00508 * 179.97438 * 21 20 18 43 43 H 1.07997 * 120.07375 * 0.02562 * 26 7 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 16 3.6004 1.7002 0.3712 5 8 3.8848 0.9833 1.5647 6 8 3.7650 3.1065 0.2513 7 6 4.5894 0.9738 -0.8932 8 6 5.0301 -0.3314 -0.7608 9 6 5.8122 -0.9074 -1.7459 10 6 6.1486 -0.1868 -2.8734 11 6 5.7026 1.1284 -3.0160 12 6 6.0593 1.9063 -4.2203 13 8 5.6695 3.0503 -4.3418 14 8 6.8170 1.3468 -5.1835 15 6 7.1278 2.1697 -6.3387 16 6 7.9906 1.3701 -7.3170 17 6 8.3177 2.2369 -8.5346 18 6 9.1671 1.4491 -9.4985 19 1 9.4454 0.4318 -9.2662 20 6 9.5888 2.0272 -10.6771 21 7 10.3296 1.3396 -11.5185 22 14 9.1068 3.7865 -11.0794 23 1 10.1346 4.7158 -10.5454 24 1 9.0102 3.9488 -12.5524 25 1 7.7924 4.0936 -10.4603 26 6 4.9183 1.7056 -2.0151 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5138 0.8899 32 1 1.4150 2.1090 -0.2174 33 1 4.7659 -0.9014 0.1176 34 1 6.1565 -1.9250 -1.6342 35 1 6.7558 -0.6390 -3.6436 36 1 6.2025 2.4694 -6.8309 37 1 7.6721 3.0574 -6.0166 38 1 8.9158 1.0707 -6.8246 39 1 7.4467 0.4821 -7.6392 40 1 7.3924 2.5360 -9.0269 41 1 8.8615 3.1251 -8.2128 42 1 10.6260 1.7461 -12.3479 43 1 4.5707 2.7228 -2.1189 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000030757860.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:20 Heat of formation + Delta-G solvation = -172.624338 kcal Electronic energy + Delta-G solvation = -26276.950420 eV Core-core repulsion = 22219.870628 eV Total energy + Delta-G solvation = -4057.079792 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.78737 -40.00682 -38.47300 -37.88838 -37.07090 -36.79244 -35.97132 -33.95204 -32.84366 -32.42413 -30.60448 -29.50240 -26.12220 -24.70160 -24.25645 -23.71197 -22.30859 -22.05428 -20.71601 -19.62902 -19.04733 -18.57124 -18.31475 -17.76899 -17.35338 -17.21799 -17.09240 -16.37167 -16.20498 -15.82643 -15.63935 -15.51447 -15.11942 -14.83025 -14.64396 -14.37553 -14.14143 -13.85214 -13.79421 -13.48910 -13.34318 -13.28500 -12.93530 -12.89231 -12.74549 -12.63076 -12.58125 -12.43638 -12.19346 -12.07927 -11.99213 -11.79120 -11.60049 -11.44331 -11.37871 -10.78799 -10.70471 -10.49418 -10.33171 -8.31388 -6.36224 -0.79100 -0.62276 -0.26223 1.22456 1.35964 1.37110 1.42364 1.48816 1.92989 2.34280 2.35260 2.66161 3.03786 3.15744 3.38786 3.62514 3.84576 3.90270 3.96519 3.97929 4.04058 4.14531 4.26636 4.31486 4.35117 4.49625 4.61228 4.65996 4.67683 4.71234 4.80800 4.93447 5.00054 5.05199 5.11716 5.16450 5.21908 5.38278 5.43962 5.46802 5.53695 5.60559 6.03300 6.24139 6.49572 6.71531 7.28253 8.84897 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.023859 B = 0.001877 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.264426 B =14910.508438 C =15146.621228 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.098 3.902 3 N -1.108 6.108 4 S 2.718 3.282 5 O -0.971 6.971 6 O -0.991 6.991 7 C -0.692 4.692 8 C 0.014 3.986 9 C -0.137 4.137 10 C -0.007 4.007 11 C -0.160 4.160 12 C 0.503 3.497 13 O -0.536 6.536 14 O -0.349 6.349 15 C 0.074 3.926 16 C -0.091 4.091 17 C -0.011 4.011 18 C -0.533 4.533 19 H 0.037 0.963 20 C 0.005 3.995 21 N -0.948 5.948 22 Si 0.948 3.052 23 H -0.267 1.267 24 H -0.283 1.283 25 H -0.247 1.247 26 C 0.030 3.970 27 H 0.063 0.937 28 H 0.064 0.936 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.087 0.913 32 H 0.428 0.572 33 H 0.177 0.823 34 H 0.183 0.817 35 H 0.160 0.840 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.065 0.935 39 H 0.067 0.933 40 H 0.026 0.974 41 H 0.023 0.977 42 H 0.267 0.733 43 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.911 -6.526 28.508 35.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.027 4.027 3 N -0.872 5.872 4 S 2.807 3.193 5 O -0.961 6.961 6 O -0.981 6.981 7 C -0.778 4.778 8 C -0.005 4.005 9 C -0.155 4.155 10 C -0.025 4.025 11 C -0.162 4.162 12 C 0.350 3.650 13 O -0.427 6.427 14 O -0.265 6.265 15 C 0.001 3.999 16 C -0.128 4.128 17 C -0.048 4.048 18 C -0.571 4.571 19 H 0.056 0.944 20 C -0.192 4.192 21 N -0.588 5.588 22 Si 0.772 3.228 23 H -0.192 1.192 24 H -0.209 1.209 25 H -0.170 1.170 26 C 0.010 3.990 27 H 0.082 0.918 28 H 0.083 0.917 29 H 0.105 0.895 30 H 0.097 0.903 31 H 0.105 0.895 32 H 0.265 0.735 33 H 0.195 0.805 34 H 0.200 0.800 35 H 0.178 0.822 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.084 0.916 39 H 0.085 0.915 40 H 0.044 0.956 41 H 0.042 0.958 42 H 0.076 0.924 43 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -20.498 -5.888 29.027 36.020 hybrid contribution 0.237 0.962 -1.734 1.997 sum -20.261 -4.926 27.293 34.346 Atomic orbital electron populations 1.21978 0.92905 1.04053 1.02964 1.21604 0.97623 0.80212 1.03244 1.55356 1.27254 1.16278 1.88338 1.01060 0.72804 0.72145 0.73315 1.93570 1.84610 1.74730 1.43200 1.93581 1.85951 1.31327 1.87213 1.30947 1.22398 1.07399 1.17072 1.21687 0.89360 0.91103 0.98339 1.21775 0.98586 1.02591 0.92528 1.22152 0.91764 0.90863 0.97752 1.19237 1.06626 0.96619 0.93751 1.21549 0.75048 0.85054 0.83372 1.90831 1.52819 1.19753 1.79289 1.86500 1.63790 1.46370 1.29818 1.23281 1.00114 0.93507 0.83026 1.21320 0.98746 0.98850 0.93924 1.19458 0.96326 0.95796 0.93224 1.21386 1.31812 1.00182 1.03686 0.94418 1.25987 0.94489 1.02780 0.95941 1.70050 1.37757 1.39541 1.11498 0.85688 0.80317 0.79368 0.77476 1.19208 1.20898 1.17000 1.20955 0.89641 0.99041 0.89333 0.91766 0.91697 0.89515 0.90286 0.89453 0.73540 0.80540 0.80015 0.82218 0.90888 0.91055 0.91606 0.91471 0.95611 0.95836 0.92403 0.84018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.54 10.05 71.98 0.72 0.19 16 2 C 0.10 0.52 6.94 86.38 0.60 1.12 16 3 N -1.11 -10.00 6.00 -187.49 -1.12 -11.12 16 4 S 2.72 42.78 5.73 -56.49 -0.32 42.46 16 5 O -0.97 -18.42 16.75 -128.00 -2.14 -20.57 16 6 O -0.99 -23.37 17.27 -128.00 -2.21 -25.58 16 7 C -0.69 -10.82 5.94 22.23 0.13 -10.69 16 8 C 0.01 0.15 9.52 22.33 0.21 0.36 16 9 C -0.14 -1.34 10.03 22.23 0.22 -1.11 16 10 C -0.01 -0.11 9.62 22.54 0.22 0.10 16 11 C -0.16 -3.60 5.87 -20.10 -0.12 -3.72 16 12 C 0.50 14.81 7.90 70.33 0.56 15.36 16 13 O -0.54 -18.74 16.14 19.93 0.32 -18.41 16 14 O -0.35 -10.45 9.47 -56.23 -0.53 -10.98 16 15 C 0.07 2.43 5.47 71.98 0.39 2.82 16 16 C -0.09 -3.42 5.53 30.59 0.17 -3.26 16 17 C -0.01 -0.48 4.04 29.85 0.12 -0.36 16 18 C -0.53 -30.26 9.66 25.60 0.25 -30.02 16 19 H 0.04 2.34 7.99 -2.91 -0.02 2.31 16 20 C 0.01 0.30 5.47 84.66 0.46 0.76 16 21 N -0.95 -58.97 13.96 21.45 0.30 -58.67 16 22 Si 0.95 43.89 27.47 68.60 1.88 45.78 16 23 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 24 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 25 H -0.25 -10.58 6.54 99.48 0.65 -9.93 16 26 C 0.03 0.63 9.07 22.54 0.20 0.83 16 27 H 0.06 0.24 8.14 -2.39 -0.02 0.22 16 28 H 0.06 0.22 8.14 -2.39 -0.02 0.20 16 29 H 0.09 0.10 8.14 -2.39 -0.02 0.08 16 30 H 0.08 0.23 8.14 -2.39 -0.02 0.22 16 31 H 0.09 0.39 7.75 -2.39 -0.02 0.37 16 32 H 0.43 2.76 8.65 -96.75 -0.84 1.92 16 33 H 0.18 0.83 7.61 -2.91 -0.02 0.81 16 34 H 0.18 0.45 8.06 -2.91 -0.02 0.43 16 35 H 0.16 2.22 7.61 -2.91 -0.02 2.20 16 36 H 0.07 2.35 8.14 -2.38 -0.02 2.33 16 37 H 0.07 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.07 2.48 8.14 -2.39 -0.02 2.46 16 39 H 0.07 2.51 8.14 -2.39 -0.02 2.49 16 40 H 0.03 1.14 7.20 -2.39 -0.02 1.13 16 41 H 0.02 1.03 7.57 -2.39 -0.02 1.02 16 42 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 43 H 0.14 3.26 7.20 -2.91 -0.02 3.24 16 Total: -1.00 -80.04 381.75 0.45 -79.59 By element: Atomic # 1 Polarization: 4.97 SS G_CDS: 0.14 Total: 5.11 kcal Atomic # 6 Polarization: -31.74 SS G_CDS: 4.14 Total: -27.60 kcal Atomic # 7 Polarization: -68.97 SS G_CDS: -0.83 Total: -69.79 kcal Atomic # 8 Polarization: -70.98 SS G_CDS: -4.57 Total: -75.54 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 1.88 Total: 45.78 kcal Atomic # 16 Polarization: 42.78 SS G_CDS: -0.32 Total: 42.46 kcal Total: -80.04 0.45 -79.59 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000030757860.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.030 kcal (2) G-P(sol) polarization free energy of solvation -80.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -173.073 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.594 kcal (6) G-S(sol) free energy of system = (1) + (5) -172.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds