Wall clock time and date at job start Sat Apr 11 2020 06:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47349 * 2 1 4 4 S 1.81397 * 109.47191 * 180.02562 * 3 2 1 5 5 O 1.42097 * 110.54152 * 68.37921 * 4 3 2 6 6 O 1.42095 * 110.54138 * 291.62400 * 4 3 2 7 7 N 1.65601 * 104.44774 * 180.02562 * 4 3 2 8 8 C 1.38830 * 120.00362 * 59.49415 * 7 4 3 9 9 C 1.38961 * 120.17718 * 35.69375 * 8 7 4 10 10 C 1.37952 * 120.06601 * 180.02562 * 9 8 7 11 11 C 1.38626 * 120.43791 * 0.02562 * 10 9 8 12 12 C 1.37723 * 120.36129 * 359.97438 * 11 10 9 13 13 C 1.39797 * 119.91883 * 359.97438 * 12 11 10 14 14 C 1.47292 * 120.21276 * 179.97438 * 13 12 11 15 15 O 1.21517 * 120.00483 * 180.02562 * 14 13 12 16 16 O 1.34770 * 119.99987 * 359.97438 * 14 13 12 17 17 C 1.45204 * 117.00140 * 179.97438 * 16 14 13 18 18 C 1.52996 * 109.47019 * 180.02562 * 17 16 14 19 19 C 1.50703 * 109.47015 * 180.02562 * 18 17 16 20 20 H 1.08004 * 120.00029 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00099 * 180.02562 * 19 18 17 22 22 N 1.31517 * 120.00056 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00124 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46854 * 59.99983 * 23 21 19 25 25 H 1.48500 * 109.47091 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46968 * 299.99944 * 23 21 19 27 27 H 1.09000 * 109.47009 * 299.99703 * 1 2 3 28 28 H 1.09002 * 109.47063 * 59.99665 * 1 2 3 29 29 H 1.08997 * 109.47324 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47009 * 240.00297 * 2 1 3 31 31 H 1.09002 * 109.47063 * 120.00335 * 2 1 3 32 32 H 1.09000 * 109.46823 * 60.00183 * 3 2 1 33 33 H 1.09005 * 109.46970 * 300.00577 * 3 2 1 34 34 H 0.96998 * 119.99874 * 239.49448 * 7 4 3 35 35 H 1.07998 * 119.96683 * 0.29610 * 9 8 7 36 36 H 1.08002 * 119.77658 * 180.02562 * 10 9 8 37 37 H 1.07997 * 119.82223 * 179.97438 * 11 10 9 38 38 H 1.07996 * 120.04155 * 180.02562 * 12 11 10 39 39 H 1.09001 * 109.47305 * 300.00542 * 17 16 14 40 40 H 1.09004 * 109.46586 * 60.00314 * 17 16 14 41 41 H 1.09001 * 109.47482 * 300.00381 * 18 17 16 42 42 H 1.09004 * 109.47228 * 60.00655 * 18 17 16 43 43 H 0.96998 * 119.99925 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 16 3.8541 1.4424 -0.0008 5 8 4.3521 0.9523 -1.2381 6 8 4.3532 0.9519 1.2359 7 7 4.2673 3.0461 0.0000 8 6 3.8499 3.8700 1.0365 9 6 3.7744 3.3771 2.3336 10 6 3.3589 4.1977 3.3617 11 6 3.0136 5.5167 3.1117 12 6 3.0818 6.0238 1.8330 13 6 3.5019 5.2058 0.7800 14 6 3.5768 5.7412 -0.5901 15 8 3.9420 5.0267 -1.5026 16 8 3.2392 7.0233 -0.8319 17 6 3.3376 7.4831 -2.2057 18 6 2.9175 8.9522 -2.2832 19 6 3.0190 9.4292 -3.7091 20 1 3.3505 8.7523 -4.4827 21 6 2.6898 10.7300 -4.0260 22 7 2.2875 11.5547 -3.0838 23 14 2.8164 11.3215 -5.7934 24 1 1.9224 10.5054 -6.6537 25 1 2.4096 12.7477 -5.8684 26 1 4.2183 11.1817 -6.2630 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 4.8009 3.4097 -0.7238 35 1 4.0455 2.3517 2.5376 36 1 3.3024 3.8098 4.3681 37 1 2.6892 6.1502 3.9239 38 1 2.8119 7.0523 1.6441 39 1 4.3668 7.3812 -2.5501 40 1 2.6820 6.8835 -2.8373 41 1 1.8884 9.0545 -1.9386 42 1 3.5734 9.5515 -1.6517 43 1 2.0555 12.4698 -3.3069 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000052171398.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:58 Heat of formation + Delta-G solvation = -142.592816 kcal Electronic energy + Delta-G solvation = -27377.233176 eV Core-core repulsion = 23321.455648 eV Total energy + Delta-G solvation = -4055.777527 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 1.74 seconds Orbital eigenvalues (eV) -40.64117 -39.04135 -37.44331 -36.39659 -36.33025 -35.31674 -35.15120 -33.40914 -31.73369 -30.20742 -29.42119 -28.13728 -25.45437 -24.05172 -23.02200 -22.31801 -21.29927 -20.76029 -19.72984 -18.13248 -17.88668 -17.70628 -16.83853 -16.64476 -16.24630 -16.10095 -16.00170 -15.31599 -15.01394 -14.85538 -14.52518 -14.19943 -13.95807 -13.76808 -13.17841 -13.10245 -13.02514 -12.89009 -12.73165 -12.45795 -12.39272 -12.30441 -12.13466 -11.89478 -11.53317 -11.38662 -11.31786 -11.17667 -11.10488 -10.84201 -10.80053 -10.74705 -10.26752 -9.74927 -9.68681 -9.37085 -9.31033 -8.61119 -8.48536 -6.14953 -4.19640 -0.21486 0.55951 1.05623 2.22778 2.60254 3.00274 3.27290 3.31175 3.31526 3.35068 3.53408 3.81230 4.06075 4.31216 4.34873 4.51345 4.64051 4.65087 4.76501 4.86938 4.90052 5.12242 5.15440 5.16847 5.21797 5.25390 5.48774 5.51950 5.54916 5.74343 5.77072 5.93685 5.99348 6.01136 6.10346 6.22982 6.47460 6.55526 6.70102 6.95101 7.48721 7.55478 7.80383 8.04516 8.18460 8.85551 9.45113 10.96466 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014040 B = 0.002632 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.887622 B =10633.964745 C =11538.668632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.115 4.115 3 C -0.625 4.625 4 S 2.603 3.397 5 O -0.944 6.944 6 O -0.950 6.950 7 N -1.043 6.043 8 C 0.217 3.783 9 C -0.197 4.197 10 C -0.056 4.056 11 C -0.152 4.152 12 C -0.034 4.034 13 C -0.150 4.150 14 C 0.506 3.494 15 O -0.519 6.519 16 O -0.349 6.349 17 C 0.075 3.925 18 C 0.025 3.975 19 C -0.528 4.528 20 H 0.059 0.941 21 C 0.062 3.938 22 N -0.890 5.890 23 Si 0.900 3.100 24 H -0.275 1.275 25 H -0.285 1.285 26 H -0.275 1.275 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.080 0.920 32 H 0.136 0.864 33 H 0.139 0.861 34 H 0.440 0.560 35 H 0.168 0.832 36 H 0.135 0.865 37 H 0.134 0.866 38 H 0.148 0.852 39 H 0.061 0.939 40 H 0.060 0.940 41 H 0.028 0.972 42 H 0.029 0.971 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.208 -20.463 14.601 25.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.154 4.154 3 C -0.756 4.756 4 S 2.698 3.302 5 O -0.935 6.935 6 O -0.940 6.940 7 N -0.797 5.797 8 C 0.117 3.883 9 C -0.218 4.218 10 C -0.075 4.075 11 C -0.171 4.171 12 C -0.053 4.053 13 C -0.155 4.155 14 C 0.351 3.649 15 O -0.410 6.410 16 O -0.264 6.264 17 C 0.003 3.997 18 C -0.012 4.012 19 C -0.567 4.567 20 H 0.077 0.923 21 C -0.141 4.141 22 N -0.528 5.528 23 Si 0.727 3.273 24 H -0.200 1.200 25 H -0.211 1.211 26 H -0.200 1.200 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.082 0.918 30 H 0.098 0.902 31 H 0.098 0.902 32 H 0.154 0.846 33 H 0.158 0.842 34 H 0.284 0.716 35 H 0.185 0.815 36 H 0.153 0.847 37 H 0.152 0.848 38 H 0.166 0.834 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.047 0.953 42 H 0.047 0.953 43 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -1.590 -21.267 14.342 25.700 hybrid contribution -0.278 1.138 -1.471 1.880 sum -1.868 -20.130 12.871 23.966 Atomic orbital electron populations 1.21718 0.93545 1.02395 1.02727 1.21272 0.99018 0.91441 1.03685 1.30585 1.25837 1.06518 1.12628 1.05385 0.77986 0.72211 0.74569 1.93636 1.78009 1.77305 1.44524 1.93533 1.77301 1.78198 1.44996 1.53561 1.64338 1.29040 1.32727 1.17399 0.93834 0.89562 0.87458 1.21952 1.05675 1.04063 0.90086 1.21273 0.93932 0.93238 0.99011 1.21217 1.02892 0.95955 0.97009 1.21544 0.92311 1.00114 0.91329 1.19207 1.09836 0.94325 0.92139 1.20909 0.74091 0.81422 0.88439 1.90652 1.44837 1.59224 1.46329 1.86588 1.77648 1.26234 1.35953 1.23722 1.01297 0.99026 0.75675 1.19168 0.97971 0.86146 0.97876 1.20930 1.46321 0.96647 0.92754 0.92285 1.24975 0.94795 0.96553 0.97743 1.69957 1.44329 1.05922 1.32613 0.86526 0.78710 0.77706 0.84321 1.20043 1.21096 1.20040 0.92080 0.92021 0.91818 0.90206 0.90182 0.84552 0.84231 0.71566 0.81483 0.84704 0.84767 0.83436 0.92077 0.92115 0.95331 0.95302 0.92605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.91 37.16 0.37 -0.50 16 2 C -0.12 -0.79 5.94 -26.73 -0.16 -0.95 16 3 C -0.63 -4.91 5.88 37.16 0.22 -4.69 16 4 S 2.60 28.19 5.22 -107.50 -0.56 27.63 16 5 O -0.94 -13.38 18.08 -57.54 -1.04 -14.42 16 6 O -0.95 -11.31 15.07 -57.54 -0.87 -12.18 16 7 N -1.04 -12.72 4.96 32.55 0.16 -12.56 16 8 C 0.22 2.59 6.10 -83.61 -0.51 2.08 16 9 C -0.20 -1.94 9.23 -39.42 -0.36 -2.30 16 10 C -0.06 -0.44 10.03 -39.54 -0.40 -0.84 16 11 C -0.15 -1.29 10.02 -39.63 -0.40 -1.68 16 12 C -0.03 -0.38 9.61 -39.19 -0.38 -0.76 16 13 C -0.15 -2.00 5.89 -104.82 -0.62 -2.62 16 14 C 0.51 8.53 7.89 34.41 0.27 8.81 16 15 O -0.52 -9.41 13.71 -19.28 -0.26 -9.67 16 16 O -0.35 -6.61 9.47 -40.68 -0.39 -7.00 16 17 C 0.08 1.61 5.41 37.16 0.20 1.81 16 18 C 0.03 0.65 5.35 -27.88 -0.15 0.50 16 19 C -0.53 -14.59 9.11 -34.44 -0.31 -14.90 16 20 H 0.06 1.58 7.74 -52.48 -0.41 1.17 16 21 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 22 N -0.89 -25.93 13.29 55.43 0.74 -25.19 16 23 Si 0.90 21.14 29.54 -169.99 -5.02 16.12 16 24 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 25 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 26 H -0.27 -6.36 7.11 56.52 0.40 -5.96 16 27 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 28 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.11 16 30 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.08 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.14 0.86 8.14 -51.92 -0.42 0.44 16 33 H 0.14 1.06 8.14 -51.92 -0.42 0.63 16 34 H 0.44 5.89 6.55 -34.47 -0.23 5.66 16 35 H 0.17 1.60 5.20 -52.49 -0.27 1.33 16 36 H 0.14 0.68 8.06 -52.49 -0.42 0.25 16 37 H 0.13 0.80 8.06 -52.49 -0.42 0.38 16 38 H 0.15 1.64 7.61 -52.49 -0.40 1.24 16 39 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 40 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 41 H 0.03 0.76 8.14 -51.93 -0.42 0.33 16 42 H 0.03 0.77 8.14 -51.93 -0.42 0.34 16 43 H 0.26 7.25 8.31 -40.82 -0.34 6.91 16 LS Contribution 377.57 15.07 5.69 5.69 Total: -1.00 -33.97 377.57 -9.81 -43.78 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: -5.93 Total: 2.22 kcal Atomic # 6 Polarization: -12.11 SS G_CDS: -2.32 Total: -14.43 kcal Atomic # 7 Polarization: -38.65 SS G_CDS: 0.90 Total: -37.75 kcal Atomic # 8 Polarization: -40.71 SS G_CDS: -2.56 Total: -43.26 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Atomic # 16 Polarization: 28.19 SS G_CDS: -0.56 Total: 27.63 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -33.97 -9.81 -43.78 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052171398.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.812 kcal (2) G-P(sol) polarization free energy of solvation -33.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.808 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.781 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.593 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.74 seconds