Wall clock time and date at job start Sat Apr 11 2020 06:17:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.53000 * 109.47349 * 2 1 4 4 S 1.81397 * 109.47191 * 180.02562 * 3 2 1 5 5 O 1.42097 * 110.54152 * 68.37921 * 4 3 2 6 6 O 1.42095 * 110.54138 * 291.62400 * 4 3 2 7 7 N 1.65601 * 104.44774 * 180.02562 * 4 3 2 8 8 C 1.38830 * 120.00362 * 59.49415 * 7 4 3 9 9 C 1.38961 * 120.17718 * 35.69375 * 8 7 4 10 10 C 1.37952 * 120.06601 * 180.02562 * 9 8 7 11 11 C 1.38626 * 120.43791 * 0.02562 * 10 9 8 12 12 C 1.37723 * 120.36129 * 359.97438 * 11 10 9 13 13 C 1.39797 * 119.91883 * 359.97438 * 12 11 10 14 14 C 1.47292 * 120.21276 * 179.97438 * 13 12 11 15 15 O 1.21517 * 120.00483 * 180.02562 * 14 13 12 16 16 O 1.34770 * 119.99987 * 359.97438 * 14 13 12 17 17 C 1.45204 * 117.00140 * 179.97438 * 16 14 13 18 18 C 1.52996 * 109.47019 * 180.02562 * 17 16 14 19 19 C 1.50703 * 109.47015 * 180.02562 * 18 17 16 20 20 H 1.08004 * 120.00029 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00099 * 180.02562 * 19 18 17 22 22 N 1.31517 * 120.00056 * 0.02562 * 21 19 18 23 23 Si 1.86806 * 120.00124 * 179.97438 * 21 19 18 24 24 H 1.48499 * 109.46854 * 59.99983 * 23 21 19 25 25 H 1.48500 * 109.47091 * 180.02562 * 23 21 19 26 26 H 1.48504 * 109.46968 * 299.99944 * 23 21 19 27 27 H 1.09000 * 109.47009 * 299.99703 * 1 2 3 28 28 H 1.09002 * 109.47063 * 59.99665 * 1 2 3 29 29 H 1.08997 * 109.47324 * 179.97438 * 1 2 3 30 30 H 1.09000 * 109.47009 * 240.00297 * 2 1 3 31 31 H 1.09002 * 109.47063 * 120.00335 * 2 1 3 32 32 H 1.09000 * 109.46823 * 60.00183 * 3 2 1 33 33 H 1.09005 * 109.46970 * 300.00577 * 3 2 1 34 34 H 0.96998 * 119.99874 * 239.49448 * 7 4 3 35 35 H 1.07998 * 119.96683 * 0.29610 * 9 8 7 36 36 H 1.08002 * 119.77658 * 180.02562 * 10 9 8 37 37 H 1.07997 * 119.82223 * 179.97438 * 11 10 9 38 38 H 1.07996 * 120.04155 * 180.02562 * 12 11 10 39 39 H 1.09001 * 109.47305 * 300.00542 * 17 16 14 40 40 H 1.09004 * 109.46586 * 60.00314 * 17 16 14 41 41 H 1.09001 * 109.47482 * 300.00381 * 18 17 16 42 42 H 1.09004 * 109.47228 * 60.00655 * 18 17 16 43 43 H 0.96998 * 119.99925 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 16 3.8541 1.4424 -0.0008 5 8 4.3521 0.9523 -1.2381 6 8 4.3532 0.9519 1.2359 7 7 4.2673 3.0461 0.0000 8 6 3.8499 3.8700 1.0365 9 6 3.7744 3.3771 2.3336 10 6 3.3589 4.1977 3.3617 11 6 3.0136 5.5167 3.1117 12 6 3.0818 6.0238 1.8330 13 6 3.5019 5.2058 0.7800 14 6 3.5768 5.7412 -0.5901 15 8 3.9420 5.0267 -1.5026 16 8 3.2392 7.0233 -0.8319 17 6 3.3376 7.4831 -2.2057 18 6 2.9175 8.9522 -2.2832 19 6 3.0190 9.4292 -3.7091 20 1 3.3505 8.7523 -4.4827 21 6 2.6898 10.7300 -4.0260 22 7 2.2875 11.5547 -3.0838 23 14 2.8164 11.3215 -5.7934 24 1 1.9224 10.5054 -6.6537 25 1 2.4096 12.7477 -5.8684 26 1 4.2183 11.1817 -6.2630 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3634 -1.0276 -0.0005 30 1 1.8934 -0.5138 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 1.6768 1.9563 0.8900 33 1 1.6767 1.9564 -0.8900 34 1 4.8009 3.4097 -0.7238 35 1 4.0455 2.3517 2.5376 36 1 3.3024 3.8098 4.3681 37 1 2.6892 6.1502 3.9239 38 1 2.8119 7.0523 1.6441 39 1 4.3668 7.3812 -2.5501 40 1 2.6820 6.8835 -2.8373 41 1 1.8884 9.0545 -1.9386 42 1 3.5734 9.5515 -1.6517 43 1 2.0555 12.4698 -3.3069 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000052171398.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:17:57 Heat of formation + Delta-G solvation = -164.316127 kcal Electronic energy + Delta-G solvation = -27378.175169 eV Core-core repulsion = 23321.455648 eV Total energy + Delta-G solvation = -4056.719521 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.81733 -40.14787 -38.39086 -37.75445 -37.28746 -36.12574 -35.87562 -35.43715 -32.87289 -31.93834 -30.27541 -28.71242 -27.26134 -25.26718 -23.90905 -22.98667 -22.86079 -22.13538 -20.59085 -19.26512 -18.88499 -18.73649 -18.28552 -17.75929 -17.60195 -17.51841 -16.96839 -16.57032 -16.04857 -15.80287 -15.77916 -15.20213 -15.04879 -14.55578 -14.46465 -14.36700 -14.20974 -13.73311 -13.69191 -13.51857 -13.37555 -13.27049 -13.15371 -13.09890 -12.93911 -12.60598 -12.60094 -12.41208 -12.33521 -12.02289 -11.87547 -11.82209 -11.58617 -11.51263 -11.50079 -11.26713 -10.61997 -10.16194 -9.44247 -8.28343 -6.41426 -1.04435 -0.36612 0.25865 1.36085 1.40033 1.43461 1.45644 1.50890 1.66486 2.38956 2.48894 2.66700 3.00328 3.06225 3.43763 3.56497 3.68750 3.80333 3.81770 4.08089 4.13609 4.20123 4.21843 4.34012 4.35261 4.43531 4.59310 4.66246 4.68113 4.78780 4.96017 5.02314 5.04933 5.13426 5.23004 5.31090 5.32320 5.42507 5.45304 5.48023 5.69213 5.76700 5.90918 6.05051 6.63078 6.72146 7.28356 8.83965 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.014040 B = 0.002632 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1993.887622 B =10633.964745 C =11538.668632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.125 4.125 3 C -0.607 4.607 4 S 2.606 3.394 5 O -0.985 6.985 6 O -0.963 6.963 7 N -1.052 6.052 8 C 0.211 3.789 9 C -0.199 4.199 10 C -0.034 4.034 11 C -0.140 4.140 12 C -0.042 4.042 13 C -0.175 4.175 14 C 0.501 3.499 15 O -0.538 6.538 16 O -0.356 6.356 17 C 0.091 3.909 18 C 0.033 3.967 19 C -0.552 4.552 20 H 0.064 0.936 21 C 0.009 3.991 22 N -0.925 5.925 23 Si 0.971 3.029 24 H -0.266 1.266 25 H -0.279 1.279 26 H -0.267 1.267 27 H 0.068 0.932 28 H 0.056 0.944 29 H 0.075 0.925 30 H 0.078 0.922 31 H 0.094 0.906 32 H 0.158 0.842 33 H 0.143 0.857 34 H 0.432 0.568 35 H 0.173 0.827 36 H 0.177 0.823 37 H 0.168 0.832 38 H 0.141 0.859 39 H 0.059 0.941 40 H 0.061 0.939 41 H 0.009 0.991 42 H 0.007 0.993 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.120 -21.379 16.217 27.015 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.164 4.164 3 C -0.740 4.740 4 S 2.705 3.295 5 O -0.976 6.976 6 O -0.953 6.953 7 N -0.803 5.803 8 C 0.111 3.889 9 C -0.220 4.220 10 C -0.053 4.053 11 C -0.159 4.159 12 C -0.061 4.061 13 C -0.180 4.180 14 C 0.349 3.651 15 O -0.431 6.431 16 O -0.272 6.272 17 C 0.018 3.982 18 C -0.004 4.004 19 C -0.590 4.590 20 H 0.082 0.918 21 C -0.191 4.191 22 N -0.564 5.564 23 Si 0.795 3.205 24 H -0.191 1.191 25 H -0.204 1.204 26 H -0.192 1.192 27 H 0.087 0.913 28 H 0.075 0.925 29 H 0.094 0.906 30 H 0.097 0.903 31 H 0.112 0.888 32 H 0.176 0.824 33 H 0.161 0.839 34 H 0.274 0.726 35 H 0.190 0.810 36 H 0.194 0.806 37 H 0.185 0.815 38 H 0.159 0.841 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.027 0.973 42 H 0.026 0.974 43 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -2.467 -22.200 15.981 27.465 hybrid contribution -0.033 1.350 -1.804 2.253 sum -2.500 -20.851 14.177 25.337 Atomic orbital electron populations 1.21753 0.92528 1.03328 1.02930 1.21458 0.99873 0.90595 1.04501 1.30454 1.21731 1.07897 1.13930 1.05231 0.79364 0.71428 0.73444 1.93580 1.79835 1.78002 1.46149 1.93501 1.78656 1.78290 1.44898 1.53603 1.64623 1.29337 1.32747 1.17581 0.94074 0.88990 0.88211 1.22124 1.05823 1.04637 0.89441 1.21765 0.90814 0.92456 1.00226 1.21569 1.01341 0.96581 0.96382 1.21637 0.92485 0.99770 0.92172 1.19093 1.13089 0.95390 0.90438 1.21605 0.73247 0.80228 0.90019 1.90640 1.45813 1.59267 1.47350 1.86565 1.78453 1.28038 1.34116 1.23208 1.00940 0.96752 0.77316 1.18960 0.96255 0.88445 0.96767 1.21343 1.46551 0.97316 0.93801 0.91807 1.25924 0.94114 0.96631 1.02408 1.70076 1.45030 1.06380 1.34939 0.85412 0.79094 0.77348 0.78679 1.19061 1.20398 1.19216 0.91276 0.92454 0.90602 0.90286 0.88775 0.82388 0.83914 0.72613 0.80993 0.80594 0.81484 0.84089 0.92221 0.92017 0.97298 0.97449 0.92284 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.91 71.98 0.71 -0.73 16 2 C -0.12 -1.51 5.94 30.60 0.18 -1.33 16 3 C -0.61 -8.69 5.88 71.98 0.42 -8.27 16 4 S 2.61 56.25 5.22 -56.49 -0.29 55.96 16 5 O -0.98 -28.94 18.08 -127.65 -2.31 -31.25 16 6 O -0.96 -22.17 15.07 -127.65 -1.92 -24.10 16 7 N -1.05 -26.07 4.96 -50.93 -0.25 -26.32 16 8 C 0.21 4.87 6.10 38.73 0.24 5.11 16 9 C -0.20 -3.42 9.23 22.38 0.21 -3.21 16 10 C -0.03 -0.40 10.03 22.29 0.22 -0.18 16 11 C -0.14 -1.87 10.02 22.24 0.22 -1.65 16 12 C -0.04 -0.88 9.61 22.53 0.22 -0.67 16 13 C -0.17 -4.64 5.89 -19.99 -0.12 -4.76 16 14 C 0.50 17.46 7.89 70.20 0.55 18.02 16 15 O -0.54 -20.30 13.71 19.78 0.27 -20.03 16 16 O -0.36 -14.02 9.47 -56.81 -0.54 -14.56 16 17 C 0.09 4.04 5.41 71.98 0.39 4.43 16 18 C 0.03 1.74 5.35 29.85 0.16 1.90 16 19 C -0.55 -31.09 9.11 25.60 0.23 -30.86 16 20 H 0.06 3.44 7.74 -2.91 -0.02 3.42 16 21 C 0.01 0.48 5.46 84.65 0.46 0.94 16 22 N -0.93 -54.78 13.29 21.45 0.28 -54.49 16 23 Si 0.97 43.33 29.54 68.60 2.03 45.36 16 24 H -0.27 -11.41 7.11 99.48 0.71 -10.70 16 25 H -0.28 -12.05 7.11 99.48 0.71 -11.35 16 26 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 27 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 28 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 29 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 30 H 0.08 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 32 H 0.16 1.59 8.14 -2.39 -0.02 1.57 16 33 H 0.14 2.04 8.14 -2.39 -0.02 2.02 16 34 H 0.43 12.21 6.55 -96.75 -0.63 11.58 16 35 H 0.17 2.86 5.20 -2.91 -0.02 2.84 16 36 H 0.18 0.69 8.06 -2.91 -0.02 0.66 16 37 H 0.17 1.19 8.06 -2.91 -0.02 1.16 16 38 H 0.14 3.11 7.61 -2.91 -0.02 3.09 16 39 H 0.06 2.64 8.14 -2.39 -0.02 2.62 16 40 H 0.06 2.70 8.14 -2.39 -0.02 2.68 16 41 H 0.01 0.48 8.14 -2.39 -0.02 0.46 16 42 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 43 H 0.27 14.84 8.31 -92.71 -0.77 14.07 16 Total: -1.00 -75.25 377.57 1.77 -73.48 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: 0.40 Total: 17.18 kcal Atomic # 6 Polarization: -25.34 SS G_CDS: 4.10 Total: -21.24 kcal Atomic # 7 Polarization: -80.85 SS G_CDS: 0.03 Total: -80.81 kcal Atomic # 8 Polarization: -85.43 SS G_CDS: -4.50 Total: -89.93 kcal Atomic # 14 Polarization: 43.33 SS G_CDS: 2.03 Total: 45.36 kcal Atomic # 16 Polarization: 56.25 SS G_CDS: -0.29 Total: 55.96 kcal Total: -75.25 1.77 -73.48 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000052171398.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -90.835 kcal (2) G-P(sol) polarization free energy of solvation -75.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.083 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.766 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds