Wall clock time and date at job start Sat Apr 11 2020 06:18:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.53006 * 109.47137 * 2 1 4 4 N 1.46494 * 109.47588 * 119.99735 * 2 1 3 5 5 S 1.65597 * 120.00077 * 94.99758 * 4 2 1 6 6 O 1.42096 * 106.40330 * 311.46712 * 5 4 2 7 7 O 1.42100 * 106.40739 * 178.54533 * 5 4 2 8 8 C 1.76206 * 107.21766 * 65.00615 * 5 4 2 9 9 C 1.38372 * 119.84830 * 270.27997 * 8 5 4 10 10 C 1.37938 * 120.14963 * 180.28075 * 9 8 5 11 11 C 1.39633 * 119.84852 * 359.44003 * 10 9 8 12 12 C 1.47723 * 120.15316 * 180.30600 * 11 10 9 13 13 O 1.21471 * 119.99606 * 359.97438 * 12 11 10 14 14 O 1.34709 * 120.00179 * 179.97438 * 12 11 10 15 15 C 1.45196 * 116.99971 * 179.97438 * 14 12 11 16 16 C 1.52996 * 109.47183 * 180.02562 * 15 14 12 17 17 C 1.50699 * 109.47433 * 180.02562 * 16 15 14 18 18 H 1.07997 * 120.00029 * 359.97438 * 17 16 15 19 19 C 1.37877 * 120.00210 * 180.02562 * 17 16 15 20 20 N 1.31512 * 120.00256 * 359.97438 * 19 17 16 21 21 Si 1.86797 * 120.00025 * 180.02562 * 19 17 16 22 22 H 1.48504 * 109.47399 * 359.97438 * 21 19 17 23 23 H 1.48497 * 109.47638 * 119.99502 * 21 19 17 24 24 H 1.48502 * 109.47341 * 239.99679 * 21 19 17 25 25 C 1.39630 * 119.69783 * 0.27990 * 11 10 9 26 26 C 1.37948 * 119.84903 * 359.97438 * 25 11 10 27 27 H 1.09003 * 109.47354 * 179.97438 * 1 2 3 28 28 H 1.09003 * 109.47605 * 300.00059 * 1 2 3 29 29 H 1.09004 * 109.47421 * 60.00361 * 1 2 3 30 30 H 1.09003 * 109.47605 * 239.99941 * 2 1 3 31 31 H 1.08998 * 109.47300 * 180.02562 * 3 2 1 32 32 H 1.09004 * 109.46670 * 300.00098 * 3 2 1 33 33 H 1.08998 * 109.47178 * 59.99931 * 3 2 1 34 34 H 0.96997 * 120.00375 * 275.01207 * 4 2 1 35 35 H 1.07998 * 119.92432 * 0.02562 * 9 8 5 36 36 H 1.08002 * 120.07979 * 179.72201 * 10 9 8 37 37 H 1.09004 * 109.47492 * 299.99973 * 15 14 12 38 38 H 1.09004 * 109.47185 * 60.00164 * 15 14 12 39 39 H 1.09003 * 109.47224 * 299.99983 * 16 15 14 40 40 H 1.09003 * 109.47471 * 60.00245 * 16 15 14 41 41 H 0.97002 * 120.00456 * 180.02562 * 20 19 17 42 42 H 1.08004 * 120.07581 * 180.02562 * 25 11 10 43 43 H 1.07996 * 119.92136 * 180.02562 * 26 25 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0183 -0.6905 1.1961 5 16 2.4122 -2.2972 1.1218 6 8 1.3247 -2.9476 0.4788 7 8 2.8777 -2.6566 2.4154 8 6 3.7928 -2.4462 0.0372 9 6 3.5867 -2.6384 -1.3175 10 6 4.6630 -2.7617 -2.1714 11 6 5.9627 -2.6803 -1.6676 12 6 7.1202 -2.8046 -2.5770 13 8 6.9425 -2.9785 -3.7660 14 8 8.3728 -2.7252 -2.0877 15 6 9.4617 -2.8566 -3.0391 16 6 10.7983 -2.7414 -2.3036 17 6 11.9285 -2.8772 -3.2912 18 1 11.7149 -3.0307 -4.3386 19 6 13.2353 -2.8064 -2.8574 20 7 13.4956 -2.6199 -1.5818 21 14 14.6362 -2.9740 -4.0816 22 1 14.0814 -3.1745 -5.4444 23 1 15.4629 -1.7406 -4.0600 24 1 15.4782 -4.1407 -3.7139 25 6 6.1634 -2.4804 -0.3003 26 6 5.0780 -2.3641 0.5431 27 1 -0.3634 -1.0277 -0.0005 28 1 -0.3634 0.5138 0.8900 29 1 -0.3634 0.5138 -0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 3.1299 1.4426 -0.0005 32 1 1.6765 1.9563 -0.8900 33 1 1.6766 1.9564 0.8900 34 1 2.1109 -0.2067 2.0317 35 1 2.5809 -2.6962 -1.7066 36 1 4.5009 -2.9162 -3.2280 37 1 9.4001 -3.8279 -3.5300 38 1 9.3885 -2.0665 -3.7865 39 1 10.8602 -1.7703 -1.8125 40 1 10.8713 -3.5317 -1.5565 41 1 14.4150 -2.5697 -1.2767 42 1 7.1661 -2.4162 0.0959 43 1 5.2319 -2.2091 1.6008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000053907939.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:10 Heat of formation + Delta-G solvation = -149.448850 kcal Electronic energy + Delta-G solvation = -26607.156430 eV Core-core repulsion = 22551.081602 eV Total energy + Delta-G solvation = -4056.074827 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.46926 -38.94034 -37.78323 -37.15230 -36.27230 -36.21159 -33.44739 -32.08895 -31.47890 -31.04661 -30.26018 -27.63655 -25.78784 -24.40957 -23.19253 -21.97653 -21.41437 -20.78149 -20.04294 -18.55499 -18.09403 -17.57943 -16.80609 -16.56615 -16.16744 -16.11221 -15.53005 -15.07518 -14.83512 -14.77315 -14.58596 -13.99590 -13.93312 -13.84491 -13.68790 -13.30512 -13.00829 -12.77210 -12.68875 -12.46304 -12.42482 -12.38178 -12.03231 -11.93005 -11.64983 -11.44904 -11.36039 -11.30522 -11.12493 -10.85794 -10.79224 -10.46184 -10.11082 -9.84796 -9.73330 -9.71560 -9.44478 -9.36133 -8.50892 -6.16589 -4.21253 -0.15857 0.13003 0.92106 2.24533 2.63084 2.87256 3.23589 3.25403 3.31358 3.35988 3.44674 3.92674 4.22721 4.32959 4.38073 4.47890 4.55687 4.63230 4.74331 4.88085 4.90775 5.04449 5.15219 5.20309 5.23998 5.31883 5.36667 5.50894 5.60781 5.64560 5.69100 5.74969 5.83594 5.93518 5.97244 5.97612 6.35734 6.48459 6.52154 6.74763 7.46215 7.53081 7.77681 7.97233 8.16119 8.84300 9.43627 10.94888 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.022849 B = 0.001981 C = 0.001961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1225.152244 B =14127.534354 C =14273.772656 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.144 3.856 3 C -0.161 4.161 4 N -1.112 6.112 5 S 2.695 3.305 6 O -0.952 6.952 7 O -0.955 6.955 8 C -0.658 4.658 9 C -0.037 4.037 10 C -0.080 4.080 11 C -0.058 4.058 12 C 0.494 3.506 13 O -0.504 6.504 14 O -0.349 6.349 15 C 0.075 3.925 16 C 0.024 3.976 17 C -0.527 4.527 18 H 0.060 0.940 19 C 0.061 3.939 20 N -0.889 5.889 21 Si 0.900 3.100 22 H -0.271 1.271 23 H -0.282 1.282 24 H -0.282 1.282 25 C -0.082 4.082 26 C -0.030 4.030 27 H 0.071 0.929 28 H 0.061 0.939 29 H 0.068 0.932 30 H 0.085 0.915 31 H 0.065 0.935 32 H 0.071 0.929 33 H 0.063 0.937 34 H 0.419 0.581 35 H 0.148 0.852 36 H 0.148 0.852 37 H 0.062 0.938 38 H 0.062 0.938 39 H 0.029 0.971 40 H 0.029 0.971 41 H 0.263 0.737 42 H 0.155 0.845 43 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.992 6.973 6.055 28.528 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.038 3.962 3 C -0.220 4.220 4 N -0.872 5.872 5 S 2.784 3.216 6 O -0.941 6.941 7 O -0.945 6.945 8 C -0.744 4.744 9 C -0.056 4.056 10 C -0.099 4.099 11 C -0.060 4.060 12 C 0.338 3.662 13 O -0.394 6.394 14 O -0.265 6.265 15 C 0.003 3.997 16 C -0.013 4.013 17 C -0.565 4.565 18 H 0.078 0.922 19 C -0.142 4.142 20 N -0.527 5.527 21 Si 0.728 3.272 22 H -0.196 1.196 23 H -0.208 1.208 24 H -0.208 1.208 25 C -0.101 4.101 26 C -0.050 4.050 27 H 0.090 0.910 28 H 0.080 0.920 29 H 0.087 0.913 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.090 0.910 33 H 0.082 0.918 34 H 0.254 0.746 35 H 0.166 0.834 36 H 0.166 0.834 37 H 0.080 0.920 38 H 0.080 0.920 39 H 0.047 0.953 40 H 0.048 0.952 41 H 0.073 0.927 42 H 0.172 0.828 43 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -27.264 6.165 6.069 28.604 hybrid contribution 1.612 0.336 -0.910 1.882 sum -25.652 6.500 5.159 26.961 Atomic orbital electron populations 1.22351 0.94649 1.03666 1.02625 1.20800 0.94771 0.94428 0.86219 1.22119 1.02086 0.94747 1.03030 1.55676 1.81615 1.30789 1.19132 1.01947 0.73762 0.72455 0.73452 1.93601 1.50780 1.72543 1.77217 1.93614 1.82074 1.81246 1.37586 1.31159 1.16760 1.16026 1.10455 1.20869 0.99971 0.93821 0.90962 1.21422 0.90477 0.96697 1.01341 1.19707 0.92073 1.00531 0.93674 1.21080 0.84343 0.73998 0.86780 1.90818 1.86863 1.44745 1.16971 1.86576 1.14538 1.81459 1.43883 1.23760 0.83975 1.01065 0.90911 1.19191 0.86701 0.98909 0.96474 1.20993 0.90353 1.51090 0.94099 0.92155 1.24988 0.98966 0.94805 0.95416 1.69975 1.19925 1.48893 1.13947 0.86402 0.81808 0.77807 0.81211 1.19580 1.20796 1.20796 1.21776 1.00832 0.95473 0.91995 1.20947 0.90339 0.93028 1.00649 0.90959 0.91963 0.91293 0.89733 0.91642 0.90970 0.91760 0.74559 0.83420 0.83408 0.91991 0.91997 0.95272 0.95244 0.92692 0.82770 0.83316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.86 9.52 37.15 0.35 -0.51 16 2 C 0.14 0.73 3.38 -67.93 -0.23 0.50 16 3 C -0.16 -0.65 9.44 37.16 0.35 -0.29 16 4 N -1.11 -6.27 5.47 -4.89 -0.03 -6.30 16 5 S 2.69 23.56 5.64 -107.50 -0.61 22.96 16 6 O -0.95 -10.40 16.53 -57.17 -0.95 -11.35 16 7 O -0.96 -10.92 17.27 -57.17 -0.99 -11.91 16 8 C -0.66 -6.20 5.83 -39.49 -0.23 -6.43 16 9 C -0.04 -0.35 8.86 -39.64 -0.35 -0.70 16 10 C -0.08 -0.90 9.60 -39.17 -0.38 -1.28 16 11 C -0.06 -0.78 5.87 -104.98 -0.62 -1.40 16 12 C 0.49 8.48 7.90 34.61 0.27 8.75 16 13 O -0.50 -9.63 16.14 -19.24 -0.31 -9.94 16 14 O -0.35 -6.67 9.47 -40.52 -0.38 -7.06 16 15 C 0.08 1.62 5.41 37.16 0.20 1.82 16 16 C 0.02 0.62 5.35 -27.89 -0.15 0.47 16 17 C -0.53 -14.54 9.11 -34.44 -0.31 -14.85 16 18 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 19 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 20 N -0.89 -25.91 13.29 55.43 0.74 -25.17 16 21 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 22 H -0.27 -6.24 7.11 56.52 0.40 -5.83 16 23 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 24 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 25 C -0.08 -0.96 9.62 -39.17 -0.38 -1.34 16 26 C -0.03 -0.30 9.50 -39.64 -0.38 -0.68 16 27 H 0.07 0.47 7.64 -51.93 -0.40 0.07 16 28 H 0.06 0.27 8.14 -51.93 -0.42 -0.15 16 29 H 0.07 0.26 8.14 -51.93 -0.42 -0.16 16 30 H 0.08 0.40 7.20 -51.93 -0.37 0.02 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 32 H 0.07 0.24 8.14 -51.93 -0.42 -0.18 16 33 H 0.06 0.21 8.14 -51.93 -0.42 -0.21 16 34 H 0.42 1.58 8.84 -34.46 -0.30 1.27 16 35 H 0.15 1.02 7.61 -52.49 -0.40 0.62 16 36 H 0.15 1.53 7.65 -52.49 -0.40 1.13 16 37 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.06 1.31 8.14 -51.93 -0.42 0.89 16 39 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 41 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 42 H 0.15 1.76 7.61 -52.48 -0.40 1.36 16 43 H 0.15 1.19 7.60 -52.49 -0.40 0.80 16 LS Contribution 382.99 15.07 5.77 5.77 Total: -1.00 -34.64 382.99 -9.73 -44.37 By element: Atomic # 1 Polarization: 2.92 SS G_CDS: -6.02 Total: -3.10 kcal Atomic # 6 Polarization: -12.41 SS G_CDS: -1.94 Total: -14.35 kcal Atomic # 7 Polarization: -32.18 SS G_CDS: 0.71 Total: -31.47 kcal Atomic # 8 Polarization: -37.63 SS G_CDS: -2.63 Total: -40.25 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Atomic # 16 Polarization: 23.56 SS G_CDS: -0.61 Total: 22.96 kcal Total LS contribution 5.77 Total: 5.77 kcal Total: -34.64 -9.73 -44.37 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000053907939.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.082 kcal (2) G-P(sol) polarization free energy of solvation -34.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -139.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.732 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds