Wall clock time and date at job start Sat Apr 11 2020 06:18:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 S 1.81397 * 109.47191 * 2 1 4 4 O 1.42097 * 110.54152 * 68.37921 * 3 2 1 5 5 O 1.42095 * 110.54138 * 291.62400 * 3 2 1 6 6 N 1.65601 * 104.44774 * 180.02562 * 3 2 1 7 7 C 1.38830 * 120.00362 * 59.49415 * 6 3 2 8 8 C 1.38961 * 120.17718 * 35.69375 * 7 6 3 9 9 C 1.37952 * 120.06601 * 180.02562 * 8 7 6 10 10 C 1.38626 * 120.43791 * 0.02562 * 9 8 7 11 11 C 1.37723 * 120.36129 * 359.97438 * 10 9 8 12 12 C 1.39797 * 119.91883 * 359.97438 * 11 10 9 13 13 C 1.47292 * 120.21276 * 179.97438 * 12 11 10 14 14 O 1.21517 * 120.00483 * 180.02562 * 13 12 11 15 15 O 1.34770 * 119.99987 * 359.97438 * 13 12 11 16 16 C 1.45204 * 117.00140 * 179.97438 * 15 13 12 17 17 C 1.52996 * 109.47019 * 180.02562 * 16 15 13 18 18 C 1.53004 * 109.47183 * 180.02562 * 17 16 15 19 19 C 1.50697 * 109.47393 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99977 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99885 * 179.97438 * 19 18 17 22 22 N 1.31510 * 120.00029 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99934 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.46994 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47266 * 119.99694 * 23 21 19 26 26 H 1.48500 * 109.47144 * 240.00518 * 23 21 19 27 27 H 1.09002 * 109.47312 * 59.99824 * 1 2 3 28 28 H 1.09000 * 109.47045 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46823 * 299.99824 * 1 2 3 30 30 H 1.09000 * 109.46823 * 240.00176 * 2 1 3 31 31 H 1.09005 * 109.46970 * 120.00570 * 2 1 3 32 32 H 0.96998 * 119.99874 * 239.49448 * 6 3 2 33 33 H 1.07998 * 119.96683 * 0.29610 * 8 7 6 34 34 H 1.08002 * 119.77658 * 180.02562 * 9 8 7 35 35 H 1.07997 * 119.82223 * 179.97438 * 10 9 8 36 36 H 1.07996 * 120.04155 * 180.02562 * 11 10 9 37 37 H 1.09001 * 109.47305 * 300.00542 * 16 15 13 38 38 H 1.09004 * 109.46586 * 60.00314 * 16 15 13 39 39 H 1.09001 * 109.47482 * 300.00381 * 17 16 15 40 40 H 1.09004 * 109.47228 * 60.00655 * 17 16 15 41 41 H 1.09001 * 109.46957 * 300.00378 * 18 17 16 42 42 H 1.08996 * 109.46947 * 59.99723 * 18 17 16 43 43 H 0.96999 * 119.99803 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8386 2.3437 1.2370 5 8 1.8386 2.3437 -1.2370 6 7 3.7843 1.5652 -0.0007 7 6 4.4220 0.8966 -1.0369 8 6 3.9321 0.9891 -2.3340 9 6 4.5672 0.3234 -3.3619 10 6 5.6957 -0.4418 -3.1115 11 6 6.1965 -0.5460 -1.8327 12 6 5.5653 0.1233 -0.7801 13 6 6.0951 0.0159 0.5901 14 8 5.5432 0.5989 1.5024 15 8 7.1913 -0.7296 0.8322 16 6 7.6576 -0.7895 2.2061 17 6 8.9026 -1.6753 2.2839 18 6 9.3936 -1.7389 3.7316 19 6 10.6203 -2.6109 3.8083 20 1 11.0105 -3.0739 2.9139 21 6 11.2445 -2.8177 5.0201 22 7 10.7696 -2.2536 6.1091 23 14 12.7646 -3.8993 5.1152 24 1 13.0930 -4.4118 3.7606 25 1 13.9063 -3.1040 5.6342 26 1 12.5027 -5.0423 6.0263 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 4.3051 1.9474 0.7229 33 1 3.0558 1.5864 -2.5383 34 1 4.1827 0.3989 -4.3683 35 1 6.1848 -0.9592 -3.9235 36 1 7.0762 -1.1432 -1.6436 37 1 7.9046 0.2149 2.5501 38 1 6.8738 -1.2074 2.8378 39 1 8.6560 -2.6798 1.9398 40 1 9.6863 -1.2570 1.6522 41 1 9.6401 -0.7346 4.0761 42 1 8.6099 -2.1574 4.3630 43 1 11.2086 -2.3994 6.9617 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000062294440.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:18 Heat of formation + Delta-G solvation = -140.947922 kcal Electronic energy + Delta-G solvation = -27053.710666 eV Core-core repulsion = 22998.004466 eV Total energy + Delta-G solvation = -4055.706199 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.85131 -39.26534 -37.53646 -36.67262 -36.42833 -35.33358 -34.03891 -33.64545 -32.07484 -31.43153 -29.59018 -27.20309 -24.70504 -24.57300 -23.33048 -22.75572 -21.15814 -20.39473 -19.81483 -18.25859 -18.05742 -17.81679 -16.94394 -16.81101 -16.39032 -16.18382 -16.12759 -15.29170 -15.03268 -14.76273 -14.49464 -14.30814 -14.24450 -13.75976 -13.50833 -13.28213 -13.00358 -12.91192 -12.55147 -12.41145 -12.36056 -12.20809 -12.19561 -12.04531 -11.91341 -11.64084 -11.29306 -11.02663 -10.95830 -10.70580 -10.66834 -10.48237 -10.38442 -9.79703 -9.56398 -9.46301 -9.19243 -8.74625 -8.42727 -6.07132 -4.10341 -0.31202 0.40129 0.91873 2.12867 2.40286 2.70875 3.22966 3.27530 3.35138 3.37885 3.39046 3.71723 4.08617 4.26962 4.38329 4.42565 4.49524 4.62303 4.66817 4.72020 4.95905 5.05524 5.11348 5.22863 5.29042 5.37874 5.44829 5.50274 5.54363 5.62819 5.79542 5.93184 5.94569 6.08138 6.24579 6.45943 6.47352 6.63958 6.79939 6.92381 7.55961 7.66290 7.75299 7.90994 8.31645 8.96135 9.54275 11.04337 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017521 B = 0.002242 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.679409 B =12485.675026 C =13515.917697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.627 4.627 3 S 2.603 3.397 4 O -0.943 6.943 5 O -0.949 6.949 6 N -1.044 6.044 7 C 0.219 3.781 8 C -0.196 4.196 9 C -0.053 4.053 10 C -0.152 4.152 11 C -0.034 4.034 12 C -0.152 4.152 13 C 0.508 3.492 14 O -0.513 6.513 15 O -0.350 6.350 16 C 0.068 3.932 17 C -0.109 4.109 18 C 0.024 3.976 19 C -0.521 4.521 20 H 0.058 0.942 21 C 0.056 3.944 22 N -0.894 5.894 23 Si 0.895 3.105 24 H -0.272 1.272 25 H -0.283 1.283 26 H -0.284 1.284 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.073 0.927 30 H 0.135 0.865 31 H 0.139 0.861 32 H 0.440 0.560 33 H 0.169 0.831 34 H 0.136 0.864 35 H 0.135 0.865 36 H 0.147 0.853 37 H 0.069 0.931 38 H 0.069 0.931 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.020 0.980 42 H 0.019 0.981 43 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.497 4.504 -20.631 28.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.757 4.757 3 S 2.697 3.303 4 O -0.933 6.933 5 O -0.939 6.939 6 N -0.797 5.797 7 C 0.119 3.881 8 C -0.217 4.217 9 C -0.072 4.072 10 C -0.171 4.171 11 C -0.053 4.053 12 C -0.158 4.158 13 C 0.354 3.646 14 O -0.404 6.404 15 O -0.266 6.266 16 C -0.005 4.005 17 C -0.146 4.146 18 C -0.013 4.013 19 C -0.560 4.560 20 H 0.076 0.924 21 C -0.145 4.145 22 N -0.533 5.533 23 Si 0.723 3.277 24 H -0.197 1.197 25 H -0.210 1.210 26 H -0.210 1.210 27 H 0.092 0.908 28 H 0.104 0.896 29 H 0.092 0.908 30 H 0.153 0.847 31 H 0.157 0.843 32 H 0.284 0.716 33 H 0.186 0.814 34 H 0.154 0.846 35 H 0.153 0.847 36 H 0.164 0.836 37 H 0.087 0.913 38 H 0.087 0.913 39 H 0.079 0.921 40 H 0.079 0.921 41 H 0.038 0.962 42 H 0.038 0.962 43 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -20.201 5.482 -20.149 29.054 hybrid contribution 1.376 -1.119 0.757 1.929 sum -18.825 4.363 -19.392 27.376 Atomic orbital electron populations 1.21519 0.89896 1.05458 1.03588 1.30428 1.07596 1.25243 1.12468 1.05471 0.72506 0.77721 0.74620 1.93644 1.82135 1.73008 1.44501 1.93536 1.82998 1.72428 1.44965 1.53604 1.27051 1.66383 1.32697 1.17407 0.92511 0.90616 0.87525 1.21982 1.05293 1.04395 0.90048 1.21302 0.93740 0.93064 0.99102 1.21222 0.97542 1.01316 0.96996 1.21504 0.97997 0.94458 0.91367 1.19147 1.00059 1.04704 0.91879 1.20903 0.78832 0.76272 0.88601 1.90686 1.58853 1.44600 1.46272 1.86554 1.41427 1.63655 1.34930 1.23584 0.97973 1.01944 0.76953 1.21776 0.93057 0.97771 1.02029 1.19057 0.96275 0.97699 0.88310 1.21194 1.11168 1.29692 0.93909 0.92370 1.25035 0.97647 0.96043 0.95773 1.69971 1.40510 1.43930 0.98896 0.86490 0.82826 0.80291 0.78122 1.19668 1.20950 1.20965 0.90773 0.89575 0.90767 0.84669 0.84297 0.71564 0.81369 0.84575 0.84700 0.83551 0.91264 0.91305 0.92096 0.92061 0.96203 0.96226 0.92905 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.82 9.92 37.16 0.37 -0.45 16 2 C -0.63 -4.25 6.59 37.16 0.25 -4.00 16 3 S 2.60 25.83 5.22 -107.50 -0.56 25.27 16 4 O -0.94 -12.62 18.08 -57.54 -1.04 -13.66 16 5 O -0.95 -10.49 15.07 -57.54 -0.87 -11.35 16 6 N -1.04 -11.48 4.96 32.55 0.16 -11.32 16 7 C 0.22 2.31 6.10 -83.61 -0.51 1.80 16 8 C -0.20 -1.69 9.23 -39.42 -0.36 -2.05 16 9 C -0.05 -0.35 10.03 -39.54 -0.40 -0.75 16 10 C -0.15 -1.05 10.02 -39.63 -0.40 -1.44 16 11 C -0.03 -0.32 9.61 -39.19 -0.38 -0.69 16 12 C -0.15 -1.75 5.89 -104.82 -0.62 -2.37 16 13 C 0.51 7.41 7.89 34.41 0.27 7.68 16 14 O -0.51 -8.31 13.71 -19.28 -0.26 -8.57 16 15 O -0.35 -5.47 9.47 -40.68 -0.39 -5.85 16 16 C 0.07 1.20 5.48 37.16 0.20 1.40 16 17 C -0.11 -2.17 5.53 -26.73 -0.15 -2.32 16 18 C 0.02 0.60 4.97 -27.88 -0.14 0.46 16 19 C -0.52 -14.45 9.11 -34.44 -0.31 -14.76 16 20 H 0.06 1.56 7.74 -52.49 -0.41 1.15 16 21 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 22 N -0.89 -26.57 13.29 55.43 0.74 -25.84 16 23 Si 0.89 21.31 29.54 -169.99 -5.02 16.28 16 24 H -0.27 -6.31 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 26 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 27 H 0.07 0.34 8.14 -51.93 -0.42 -0.08 16 28 H 0.09 0.37 8.14 -51.93 -0.42 -0.06 16 29 H 0.07 0.40 8.14 -51.93 -0.42 -0.02 16 30 H 0.13 0.69 8.14 -51.92 -0.42 0.27 16 31 H 0.14 0.89 8.14 -51.92 -0.42 0.47 16 32 H 0.44 5.33 6.55 -34.47 -0.23 5.10 16 33 H 0.17 1.43 5.20 -52.49 -0.27 1.16 16 34 H 0.14 0.52 8.06 -52.49 -0.42 0.10 16 35 H 0.14 0.60 8.06 -52.49 -0.42 0.17 16 36 H 0.15 1.27 7.61 -52.49 -0.40 0.87 16 37 H 0.07 1.23 8.14 -51.93 -0.42 0.81 16 38 H 0.07 1.21 8.14 -51.93 -0.42 0.79 16 39 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 40 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 41 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 43 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 377.57 15.07 5.69 5.69 Total: -1.00 -34.66 377.57 -9.76 -44.42 By element: Atomic # 1 Polarization: 6.87 SS G_CDS: -5.93 Total: 0.93 kcal Atomic # 6 Polarization: -13.73 SS G_CDS: -2.27 Total: -16.00 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: 0.90 Total: -37.15 kcal Atomic # 8 Polarization: -36.88 SS G_CDS: -2.56 Total: -39.44 kcal Atomic # 14 Polarization: 21.31 SS G_CDS: -5.02 Total: 16.28 kcal Atomic # 16 Polarization: 25.83 SS G_CDS: -0.56 Total: 25.27 kcal Total LS contribution 5.69 Total: 5.69 kcal Total: -34.66 -9.76 -44.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062294440.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.532 kcal (2) G-P(sol) polarization free energy of solvation -34.659 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.757 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.416 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds