Wall clock time and date at job start Sat Apr 11 2020 06:18:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 S 1.81397 * 109.47191 * 2 1 4 4 O 1.42097 * 110.54152 * 68.37921 * 3 2 1 5 5 O 1.42095 * 110.54138 * 291.62400 * 3 2 1 6 6 N 1.65601 * 104.44774 * 180.02562 * 3 2 1 7 7 C 1.38830 * 120.00362 * 59.49415 * 6 3 2 8 8 C 1.38961 * 120.17718 * 35.69375 * 7 6 3 9 9 C 1.37952 * 120.06601 * 180.02562 * 8 7 6 10 10 C 1.38626 * 120.43791 * 0.02562 * 9 8 7 11 11 C 1.37723 * 120.36129 * 359.97438 * 10 9 8 12 12 C 1.39797 * 119.91883 * 359.97438 * 11 10 9 13 13 C 1.47292 * 120.21276 * 179.97438 * 12 11 10 14 14 O 1.21517 * 120.00483 * 180.02562 * 13 12 11 15 15 O 1.34770 * 119.99987 * 359.97438 * 13 12 11 16 16 C 1.45204 * 117.00140 * 179.97438 * 15 13 12 17 17 C 1.52996 * 109.47019 * 180.02562 * 16 15 13 18 18 C 1.53004 * 109.47183 * 180.02562 * 17 16 15 19 19 C 1.50697 * 109.47393 * 180.02562 * 18 17 16 20 20 H 1.08001 * 119.99977 * 359.97438 * 19 18 17 21 21 C 1.37878 * 119.99885 * 179.97438 * 19 18 17 22 22 N 1.31510 * 120.00029 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 119.99934 * 179.97438 * 21 19 18 24 24 H 1.48509 * 109.46994 * 359.97438 * 23 21 19 25 25 H 1.48497 * 109.47266 * 119.99694 * 23 21 19 26 26 H 1.48500 * 109.47144 * 240.00518 * 23 21 19 27 27 H 1.09002 * 109.47312 * 59.99824 * 1 2 3 28 28 H 1.09000 * 109.47045 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46823 * 299.99824 * 1 2 3 30 30 H 1.09000 * 109.46823 * 240.00176 * 2 1 3 31 31 H 1.09005 * 109.46970 * 120.00570 * 2 1 3 32 32 H 0.96998 * 119.99874 * 239.49448 * 6 3 2 33 33 H 1.07998 * 119.96683 * 0.29610 * 8 7 6 34 34 H 1.08002 * 119.77658 * 180.02562 * 9 8 7 35 35 H 1.07997 * 119.82223 * 179.97438 * 10 9 8 36 36 H 1.07996 * 120.04155 * 180.02562 * 11 10 9 37 37 H 1.09001 * 109.47305 * 300.00542 * 16 15 13 38 38 H 1.09004 * 109.46586 * 60.00314 * 16 15 13 39 39 H 1.09001 * 109.47482 * 300.00381 * 17 16 15 40 40 H 1.09004 * 109.47228 * 60.00655 * 17 16 15 41 41 H 1.09001 * 109.46957 * 300.00378 * 18 17 16 42 42 H 1.08996 * 109.46947 * 59.99723 * 18 17 16 43 43 H 0.96999 * 119.99803 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 16 2.1347 1.7102 0.0000 4 8 1.8386 2.3437 1.2370 5 8 1.8386 2.3437 -1.2370 6 7 3.7843 1.5652 -0.0007 7 6 4.4220 0.8966 -1.0369 8 6 3.9321 0.9891 -2.3340 9 6 4.5672 0.3234 -3.3619 10 6 5.6957 -0.4418 -3.1115 11 6 6.1965 -0.5460 -1.8327 12 6 5.5653 0.1233 -0.7801 13 6 6.0951 0.0159 0.5901 14 8 5.5432 0.5989 1.5024 15 8 7.1913 -0.7296 0.8322 16 6 7.6576 -0.7895 2.2061 17 6 8.9026 -1.6753 2.2839 18 6 9.3936 -1.7389 3.7316 19 6 10.6203 -2.6109 3.8083 20 1 11.0105 -3.0739 2.9139 21 6 11.2445 -2.8177 5.0201 22 7 10.7696 -2.2536 6.1091 23 14 12.7646 -3.8993 5.1152 24 1 13.0930 -4.4118 3.7606 25 1 13.9063 -3.1040 5.6342 26 1 12.5027 -5.0423 6.0263 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 1.8933 -0.5138 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 4.3051 1.9474 0.7229 33 1 3.0558 1.5864 -2.5383 34 1 4.1827 0.3989 -4.3683 35 1 6.1848 -0.9592 -3.9235 36 1 7.0762 -1.1432 -1.6436 37 1 7.9046 0.2149 2.5501 38 1 6.8738 -1.2074 2.8378 39 1 8.6560 -2.6798 1.9398 40 1 9.6863 -1.2570 1.6522 41 1 9.6401 -0.7346 4.0761 42 1 8.6099 -2.1574 4.3630 43 1 11.2086 -2.3994 6.9617 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000062294440.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Apr 11 2020 06:18:17 Heat of formation + Delta-G solvation = -163.424955 kcal Electronic energy + Delta-G solvation = -27054.685343 eV Core-core repulsion = 22998.004466 eV Total energy + Delta-G solvation = -4056.680877 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 341.118 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.86083 -40.18317 -38.40329 -37.86175 -37.29114 -36.22712 -35.83997 -34.16439 -33.75272 -32.45276 -30.29943 -29.00475 -25.92161 -25.14012 -24.64487 -23.64625 -22.24223 -22.08100 -20.58631 -19.08687 -18.94022 -18.79074 -18.51525 -17.76314 -17.65403 -17.53602 -16.85940 -16.50306 -15.98492 -15.88762 -15.64321 -15.36510 -15.05961 -14.69387 -14.39206 -14.22949 -14.08882 -13.85466 -13.76831 -13.63112 -13.49191 -13.43205 -13.24742 -12.97781 -12.86167 -12.51275 -12.50390 -12.42025 -12.32388 -12.10909 -12.02948 -11.70475 -11.58393 -11.43600 -11.35755 -11.19442 -10.58779 -10.16690 -9.44551 -8.22550 -6.33994 -1.04949 -0.37636 0.25988 1.35596 1.41328 1.41559 1.43406 1.53036 1.56789 2.40925 2.49438 2.66432 2.99420 3.11720 3.49691 3.54977 3.72349 3.79784 3.83713 3.98821 4.03702 4.08223 4.28998 4.34205 4.38492 4.43078 4.63809 4.71257 4.75198 4.78923 4.87026 4.97186 5.05643 5.06862 5.17885 5.29904 5.31897 5.48114 5.48693 5.62996 5.73045 5.79680 5.90396 6.18240 6.58709 6.82502 7.35796 8.89921 Molecular weight = 341.12amu Principal moments of inertia in cm(-1) A = 0.017521 B = 0.002242 C = 0.002071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1597.679409 B =12485.675026 C =13515.917697 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.607 4.607 3 S 2.602 3.398 4 O -0.987 6.987 5 O -0.965 6.965 6 N -1.053 6.053 7 C 0.209 3.791 8 C -0.202 4.202 9 C -0.035 4.035 10 C -0.141 4.141 11 C -0.038 4.038 12 C -0.175 4.175 13 C 0.504 3.496 14 O -0.538 6.538 15 O -0.347 6.347 16 C 0.078 3.922 17 C -0.092 4.092 18 C 0.025 3.975 19 C -0.541 4.541 20 H 0.066 0.934 21 C -0.003 4.003 22 N -0.935 5.935 23 Si 0.969 3.031 24 H -0.258 1.258 25 H -0.279 1.279 26 H -0.279 1.279 27 H 0.085 0.915 28 H 0.107 0.893 29 H 0.071 0.929 30 H 0.158 0.842 31 H 0.143 0.857 32 H 0.432 0.568 33 H 0.170 0.830 34 H 0.174 0.826 35 H 0.169 0.831 36 H 0.150 0.850 37 H 0.062 0.938 38 H 0.064 0.936 39 H 0.069 0.931 40 H 0.068 0.932 41 H -0.005 1.005 42 H -0.003 1.003 43 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.541 2.756 -23.936 31.022 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.740 4.740 3 S 2.700 3.300 4 O -0.977 6.977 5 O -0.955 6.955 6 N -0.804 5.804 7 C 0.109 3.891 8 C -0.223 4.223 9 C -0.054 4.054 10 C -0.159 4.159 11 C -0.057 4.057 12 C -0.181 4.181 13 C 0.351 3.649 14 O -0.430 6.430 15 O -0.263 6.263 16 C 0.005 3.995 17 C -0.130 4.130 18 C -0.012 4.012 19 C -0.578 4.578 20 H 0.085 0.915 21 C -0.200 4.200 22 N -0.575 5.575 23 Si 0.793 3.207 24 H -0.182 1.182 25 H -0.205 1.205 26 H -0.204 1.204 27 H 0.104 0.896 28 H 0.126 0.874 29 H 0.090 0.910 30 H 0.176 0.824 31 H 0.162 0.838 32 H 0.274 0.726 33 H 0.187 0.813 34 H 0.192 0.808 35 H 0.186 0.814 36 H 0.167 0.833 37 H 0.081 0.919 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.014 0.986 42 H 0.015 0.985 43 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -20.241 3.764 -23.492 31.237 hybrid contribution 1.301 -0.575 1.671 2.194 sum -18.940 3.190 -21.821 29.070 Atomic orbital electron populations 1.21718 0.88714 1.06979 1.04186 1.30275 1.08508 1.21361 1.13902 1.05408 0.72015 0.79151 0.73421 1.93583 1.82694 1.75256 1.46205 1.93502 1.83033 1.74079 1.44889 1.53611 1.27297 1.66697 1.32786 1.17615 0.92552 0.90760 0.88122 1.22117 1.05634 1.04931 0.89580 1.21768 0.92659 0.90803 1.00123 1.21590 0.97151 1.00541 0.96637 1.21668 0.98050 0.94086 0.91849 1.19074 1.01353 1.07156 0.90508 1.21562 0.78011 0.75367 0.89911 1.90680 1.59402 1.45563 1.47383 1.86525 1.42331 1.64334 1.33137 1.23181 0.97034 1.00978 0.78332 1.21450 0.94144 0.98875 0.98530 1.18941 0.95277 0.95716 0.91278 1.21650 1.11929 1.29898 0.94367 0.91536 1.26021 1.01125 0.97508 0.95374 1.70107 1.42268 1.45523 0.99592 0.85339 0.78435 0.78207 0.78701 1.18211 1.20512 1.20444 0.89598 0.87446 0.91046 0.82352 0.83832 0.72617 0.81268 0.80832 0.81365 0.83274 0.91937 0.91721 0.91206 0.91359 0.98635 0.98510 0.92710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.48 9.92 71.98 0.71 -0.77 16 2 C -0.61 -7.38 6.59 71.98 0.47 -6.91 16 3 S 2.60 52.60 5.22 -56.49 -0.29 52.30 16 4 O -0.99 -28.05 18.08 -127.65 -2.31 -30.36 16 5 O -0.97 -21.15 15.07 -127.65 -1.92 -23.07 16 6 N -1.05 -23.90 4.96 -50.93 -0.25 -24.15 16 7 C 0.21 4.26 6.10 38.73 0.24 4.49 16 8 C -0.20 -3.01 9.23 22.38 0.21 -2.81 16 9 C -0.04 -0.32 10.03 22.29 0.22 -0.10 16 10 C -0.14 -1.36 10.02 22.24 0.22 -1.14 16 11 C -0.04 -0.61 9.61 22.53 0.22 -0.39 16 12 C -0.18 -3.92 5.89 -19.99 -0.12 -4.04 16 13 C 0.50 14.94 7.89 70.20 0.55 15.50 16 14 O -0.54 -18.24 13.71 19.78 0.27 -17.97 16 15 O -0.35 -10.89 9.47 -56.81 -0.54 -11.43 16 16 C 0.08 2.82 5.48 71.98 0.39 3.22 16 17 C -0.09 -3.71 5.53 30.59 0.17 -3.54 16 18 C 0.03 1.30 4.97 29.85 0.15 1.45 16 19 C -0.54 -30.18 9.11 25.60 0.23 -29.95 16 20 H 0.07 3.52 7.74 -2.91 -0.02 3.49 16 21 C 0.00 -0.15 5.46 84.66 0.46 0.32 16 22 N -0.93 -56.72 13.29 21.45 0.28 -56.43 16 23 Si 0.97 43.60 29.54 68.60 2.03 45.63 16 24 H -0.26 -10.95 7.11 99.48 0.71 -10.24 16 25 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 26 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 27 H 0.09 0.62 8.14 -2.39 -0.02 0.60 16 28 H 0.11 0.62 8.14 -2.39 -0.02 0.60 16 29 H 0.07 0.72 8.14 -2.39 -0.02 0.71 16 30 H 0.16 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.14 1.70 8.14 -2.39 -0.02 1.68 16 32 H 0.43 11.29 6.55 -96.75 -0.63 10.65 16 33 H 0.17 2.55 5.20 -2.91 -0.02 2.53 16 34 H 0.17 0.33 8.06 -2.91 -0.02 0.30 16 35 H 0.17 0.57 8.06 -2.91 -0.02 0.54 16 36 H 0.15 2.28 7.61 -2.91 -0.02 2.26 16 37 H 0.06 2.32 8.14 -2.39 -0.02 2.30 16 38 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 39 H 0.07 2.67 8.14 -2.39 -0.02 2.65 16 40 H 0.07 2.64 8.14 -2.39 -0.02 2.62 16 41 H 0.00 -0.27 8.14 -2.39 -0.02 -0.29 16 42 H 0.00 -0.19 8.14 -2.39 -0.02 -0.21 16 43 H 0.26 15.01 8.31 -92.71 -0.77 14.24 16 Total: -1.00 -77.13 377.57 1.80 -75.33 By element: Atomic # 1 Polarization: 14.43 SS G_CDS: 0.40 Total: 14.82 kcal Atomic # 6 Polarization: -28.80 SS G_CDS: 4.14 Total: -24.66 kcal Atomic # 7 Polarization: -80.61 SS G_CDS: 0.03 Total: -80.58 kcal Atomic # 8 Polarization: -78.34 SS G_CDS: -4.50 Total: -82.84 kcal Atomic # 14 Polarization: 43.60 SS G_CDS: 2.03 Total: 45.63 kcal Atomic # 16 Polarization: 52.60 SS G_CDS: -0.29 Total: 52.30 kcal Total: -77.13 1.80 -75.33 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000062294440.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -88.097 kcal (2) G-P(sol) polarization free energy of solvation -77.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -165.224 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.425 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds